| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 70061 = | 47 (1.020) | 39 (1.080) +CGCGTACAACT |
27/80 | NT | 45.0% | intergenic (‑13/‑326) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 236044 = | 75 (1.620) | intergenic (‑42/‑23) | rnhA/dnaQ | ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit | |||||
TTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/70127‑70061‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCAC > W3110S.gb/236044‑236113 ||||||||||| TTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCG > 1:2150722/1‑71 GCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTAC < 1:1416440/71‑1 ATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGT < 1:3117800/65‑1 CCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTC > 1:3517516/1‑71 GACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGA > 1:1431292/1‑71 GACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGA > 1:2170836/1‑71 ACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGA < 1:3427146/70‑1 GCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTAC < 1:454896/55‑1 TTTTTATCGCCACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATA > 1:3785232/1‑70 TTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATA > 1:640784/1‑70 GCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC < 1:3901940/71‑1 GCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC > 1:1701229/1‑71 AACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCT < 1:4198547/70‑1 ACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAAT < 1:306798/62‑1 CTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTA > 1:2424163/1‑69 TCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGTCGCGTACAACTCAAGTCTGACATAAATGACCGCTAT > 1:3238302/1‑69 TCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTAT > 1:3398657/1‑69 CTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG > 1:1534006/1‑71 TCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATA > 1:3982010/1‑55 TACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGA > 1:725849/1‑59 TACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC < 1:3505138/62‑1 TACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTC > 1:2944344/1‑41 ACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACA > 1:2870915/1‑50 CTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCA < 1:3339527/68‑1 CTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCA < 1:1701722/68‑1 TGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTG < 1:2706578/45‑1 TGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGT > 1:47388/1‑42 TTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAAT > 1:915436/1‑50 TTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCT > 1:2271248/1‑41 TTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCT > 1:3395592/1‑41 CTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATT < 1:2048191/70‑1 TACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC > 1:1956277/1‑71 ACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC > 1:3840555/1‑70 ACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGA > 1:1416074/1‑35 ACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGA > 1:1154186/1‑35 CG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC < 1:1610068/45‑1 TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT < 1:2687063/58‑1 TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC < 1:3187333/55‑1 TTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACA > 1:1885987/1‑61 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGT > 1:1391567/1‑71 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGT > 1:3827886/1‑71 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCG < 1:3573663/70‑1 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTAC > 1:3317162/1‑59 TTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTT > 1:1781687/1‑71 TTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTT < 1:3226764/70‑1 TTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTC < 1:1688650/70‑1 TTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTC < 1:3654734/70‑1 GGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCG > 1:974404/1‑71 GGACGCGTACAACTCAAGTCTGACATAAATGACCGCT < 1:3785120/37‑1 ACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATT > 1:545292/1‑50 ACGCGTACAACTCAAGTCTGACATAAAAGACCGCTATGAGCACTG > 1:3921992/1‑45 CGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTA < 1:243449/71‑1 GCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACAGGCCAGATCGTTCTCGCTAC > 1:283862/1‑71 TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGc < 1:441834/71‑2 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGca < 1:3851497/70‑3 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGca > 1:84422/1‑68 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAA > 1:209695/1‑71 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAA > 1:4216609/1‑71 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAA > 1:1112107/1‑71 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAA > 1:1366635/1‑71 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTA > 1:3269768/1‑65 AACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCTCTACCGCAAC < 1:3552221/71‑1 AACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTA > 1:3027620/1‑64 ACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC < 1:2639028/37‑1 ACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC < 1:4260826/37‑1 CTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAACCA > 1:2972887/1‑71 TCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAACCAC > 1:1408072/1‑71 ||||||||||| TTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/70127‑70061‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCAC > W3110S.gb/236044‑236113 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |