| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 379522 | 12 (0.200) | 17 (0.400) +AAGTGCGCTTTGTTT |
5/68 | NT | 49.7% | intergenic (‑115/‑260) | fepB/entC | iron‑enterobactin transporter subunit/isochorismate synthase 1 |
| ? | minE | = 1444537 | 38 (0.620) | intergenic (+158/+42) | rcsB/rcsC | DNA‑binding response regulator in two‑component regulatory system with RcsC and YojN/hybrid sensory kinase in two‑component regulatory system with RcsB and YojN | |||||
CGATTCCCATTATTTCAACAAATTACATTAAAGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATTTGCACTGAATGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATCCCGCGATTTCCTGACC > minE/1444468‑1444603 | cGATTCCCATTATTTCAACAAATTACATTAAAGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCAtt > 1:5424364/1‑71 (MQ=255)cGATTCCCATTATTTCAACAAATTACATTAAAGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCAtt < 1:2072073/71‑1 (MQ=255) aTTCCCATTATTTCAACAAATTACATTAAAGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATTTg > 1:2388912/1‑71 (MQ=255) tCAACAAATTACATTAAAGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATTTGCACTGAATGcc < 1:495475/70‑1 (MQ=255) tCAACAAATTACATTAAAGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATTTGCACTGAATGCCg > 1:3866005/1‑71 (MQ=255) caacaaATTACATTAAAGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATTTGCACTGAATGCCg > 1:3721234/1‑70 (MQ=255) caaATTACATTAAAGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATTTGCACTGAATGcc > 1:3982360/1‑66 (MQ=255) caaATTACATTAAAGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATTTGCACTGAATGCCGGATg > 1:2802592/1‑71 (MQ=255) aaTTACATTAAAGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATTTGCACTGAATGCCGGATgcg > 1:2224733/1‑71 (MQ=255) aCATTAAAGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATTTGCACTGAATGCCGGATgcggcg < 1:290171/70‑1 (MQ=255) cATTAAAGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATTTGCACTGAATGCCGGATGCGGCGTa < 1:1963742/71‑1 (MQ=255) ttAAAGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATTTGCACTGAATGCCg < 1:384452/58‑1 (MQ=255) aGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATTTGCACTGAATGCCGGATGCGGCGTa < 1:4458234/65‑1 (MQ=255) gTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATaaacaaagcgcactttgctggtctgttcccct < 1:5409936‑M2/70‑33 (MQ=255) gTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATaaacaaagcgcactttgctggtctgttcccct < 1:1503857‑M2/70‑33 (MQ=255) gTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATTTGCAc > 1:3199832/1‑44 (MQ=255) ggCCAGATAAGACGCGTCAGCGTCGCATCTGGCATTTGCACTGAATGCCGGATGCGGCGTAAACGCCTTAt > 1:168554/1‑71 (MQ=255) ccAGATAAGACGCGTCAGCGTCGCATCTGGCATaaacaaagcgca < 1:2478761‑M2/45‑13 (MQ=255) ccAGATAAGACGCGTCAGCGTCGCATCTGGCATTTGCACTGAATGCCGGATGCGGCGTAAACGCCTTATc < 1:3694369/70‑1 (MQ=255) cAGCTAAGACGCGTCAGCGTCGCATCTGGCATaaac > 1:2820159‑M2/1‑32 (MQ=255) cAGATAAGACGCGTCAGCGTCGCATCTGGCATaaacaaagcgcactttgctggtctgttcccctcacccta > 1:504188‑M2/1‑32 (MQ=255) cAGATAAGACGCGTCAGCGTCGCATCTGGCATTTGCACTGAATGCCGGATGCGGCGTAAACGCCTTATCCg > 1:2402772/1‑71 (MQ=255) cAGATAAGACGCGTCAGCGTCGCATCTGGCATTTGCACTGAATGCCGGATGCGGCGTAAACGCCTTATCCg > 1:3157202/1‑71 (MQ=255) cAGATAAGACGCGTCAGCGTCGCATCTGGCATTTGCACTGAATGCCGGATGCGGCGTAAACGCCTTATCCg > 1:4730169/1‑71 (MQ=255) gATAAGACGCGTCAGCGTCGCATCTGGCATaaacaaagcgcactttgctggtctgttcccctcaccctaac < 1:5382962‑M2/71‑42 (MQ=255) gATAAGACGCGTCAGCGTCGCATCTGGCATaaacaaagcgcactttgctggtctgttcccctca < 1:569061‑M2/64‑35 (MQ=255) gATAAGACGCGTCAGCGTCGCATCTGGCATaaacaaagcgcactttgctggtctgttcccctca < 1:2944624‑M2/64‑35 (MQ=255) tAAGACGCGTCAGCGTCGCATCTGGCATTTGCACTGAATGCCGGATGCGGCGTAAACGCCTTATCCGTCCt < 1:1877496/71‑1 (MQ=255) tAAGACGCGTCAGCGTCGCATCTGGCATTTGCACTGAATGCCGGATGCGGCGTAAACGCCTTATCCGTCCt < 1:32894/71‑1 (MQ=255) aaGACGCGTCAGCGTCGCATCTGGCATaaacaaagcgca < 1:2122909‑M2/39‑13 (MQ=255) aCGCGTCAGCGTCGCATCTGGCATaaacaaagcgcactttgctggtctgttcccctcaccctaaccctctc > 1:3878065‑M2/1‑24 (MQ=255) cgctTCATCGTCGCATCTGGCATTTTCACTGAATGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGaa < 1:1684529/71‑1 (MQ=18) cgcgTCAGCGTCGCATCTGGCATTTGCACTGAATGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGaa < 1:3997259/71‑1 (MQ=255) tCAGCGTCGCATCTGGCATaaacaaagcgcactttgctggtctgttcccctcaccctaac > 1:442425‑M2/1‑19 (MQ=255) tCAGCGTCGCATCTGGCATaaacaaagcgcactttgctggtctgttcccctcaccctaac > 1:5184732‑M2/1‑19 (MQ=255) tCAGCGTCGCATCTGGCATaaacaaagcgcactttgctggtctgttcccctcaccctaac > 1:449163‑M2/1‑19 (MQ=255) tCAGCGTCGCATCTGGCATaaacaaagcgcactttgctggtc > 1:1808865‑M2/1‑19 (MQ=255) tCAGCGTCGCATCTGGCATaaacaaagcgcactttgctggtc > 1:2948275‑M2/1‑19 (MQ=255) tCAGCGTCGCATCTGGCATaaacaaagcgcactttgctggtc > 1:2135539‑M2/1‑19 (MQ=255) tCAGCGTCGCATCTGGCATaaacaaagcgcactttgctgggctgttcccctcaccctaac > 1:882915‑M2/1‑19 (MQ=255) aGCGTCGCATCTGGCATTTGCACTGAATGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATCCcgc < 1:4790819/71‑1 (MQ=255) aGCGTCGCATCTGGCATTTGCACTGAATGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATCCcgc > 1:4423790/1‑71 (MQ=255) aGCGTCGCATCTGGCATTTGCACTGAATGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATCCcgc > 1:2757435/1‑71 (MQ=255) aGCGTCGCATCTGGCATTTGCACTGAATGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATCCcgc > 1:906750/1‑71 (MQ=255) aGCGTCGCATCTGGCATTTGCACTGAATGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATCCcgc > 1:5373564/1‑71 (MQ=255) gCGTCGCATCTGGCATTTGCACTGAATGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACg < 1:3059977/62‑1 (MQ=255) tCGCATCTGGCATTTGCACTGAATGCCGGATGCGGCGTAAACGCCTTAt < 1:3571554/49‑1 (MQ=255) cGCATCTGGCATTTGCACTGAATGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATCCCGCGAtt > 1:2449044/1‑70 (MQ=255) gCATCTGGCATTTGCACTGAATGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATCCCGCGATTTc > 1:1685369/1‑71 (MQ=255) aTCTGGCATTTGCACTGAATGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATCCCGCGAtt < 1:3401512/67‑1 (MQ=255) aTCTGGCATTTGCACTGAATGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATCCCGCGAtt < 1:438694/67‑1 (MQ=255) aTCTGGCATTTGCACTGAATGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATCCCGCGATTTCCt > 1:3518608/1‑71 (MQ=255) tCTGGCATaaacaaagcgcactttgctggtctgttcccctca > 1:814046‑M2/1‑8 (MQ=255) tCTGGCATTTGCACTGAATGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATCCCGCGATTTCCt > 1:986973/1‑70 (MQ=255) tCTGGCATTTGCACTGAATGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATCCCGCGATTTCCt > 1:4565502/1‑70 (MQ=255) tCTGGCATTTGCACTGAATGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATCCCGCGATTTCCt > 1:2934655/1‑70 (MQ=255) tCTGGCATTTGCACTGAATGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATCCCGCGATTTCCt > 1:2929443/1‑70 (MQ=255) tGGCATaaacaaagcgcactttgctggtctgttccc < 1:3292134‑M2/36‑31 (MQ=255) tGGCATaaacaaagcgcactttgctggtctgttccc < 1:840549‑M2/36‑31 (MQ=255) tGGCATTTGCACTGAATGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATCCCGCGATTTCCTg > 1:306424/1‑69 (MQ=255) tGGCATTTGCACTGAATGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATCCCGCGATTTCATGAc > 1:579644/1‑71 (MQ=255) ggCATTTGCACTGAATGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATCCCGCGATTTCCTGAcc > 1:3529486/1‑71 (MQ=255) ggCATTTGCACTGAATGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATCCCGCGATTTCCTGAc > 1:2841087/1‑70 (MQ=255) gCATaaacaaagcgcactttgctggtctgttcccctcaccctaaccctctccccggaggggcgaggg > 1:1143562‑M2/1‑4 (MQ=255) cATTTGCACTGAATGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATCCCGCGATTTCCTg < 1:273627/66‑1 (MQ=255) tttGCACTGAATGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATccc < 1:4686232/53‑1 (MQ=255) taaacaaagcgcactttgctggtctgttcccctcaccctaaccctctccccggaggggcg > 1:4935384‑M2/1‑1 (MQ=255) taaacaaagcgcactttgctggtctgttcccctcaccctaaccctctccccggaggggcg > 1:4537736‑M2/1‑1 (MQ=255) | CGATTCCCATTATTTCAACAAATTACATTAAAGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATTTGCACTGAATGCCGGATGCGGCGTAAACGCCTTATCCGTCCTACGAATCCCGCGATTTCCTGACC > minE/1444468‑1444603 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |