| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 835,819 | T→C | 19.6% | Y179Y (TAT→TAC) | narH → | nitrate reductase 1, beta (Fe‑S) subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 835,819 | 0 | T | C | 19.6% | 211.8 / 46.8 | 102 | Y179Y (TAT→TAC) | narH | nitrate reductase 1, beta (Fe‑S) subunit |
| Reads supporting (aligned to +/- strand): ref base T (38/44); new base C (13/7); total (51/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.12e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.42e-01 | |||||||||||
Only 100 of 103 total aligned reads displayed.
CGAAAGACAAGAACTTCGACAACATCCAGAAGGCGATGTATAGCCAGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCGGCATGTGTGGCGACCTGCCCGAGCGGTGCGATT > minE/835749‑835885 | cGAAAGACAAGAACTTCGACAACATCCAGAAGGCGATGTATAGCCAGTTCGAAAACACCTTCATGATGTAt < 1:2822654/71‑1 (MQ=255) aGACAAGAACTTCGACAACATCCAGAAGGCGATGTATAGCCAGTTCGAAAACACCTTCATGATGTATTTGc > 1:1473338/1‑71 (MQ=255) cAAGAACTTCGACAACATCCAGAAGGCGATGTATAGCCAGTTCGAAAACACCTTCATGATGTATTTGCcgc < 1:3433131/71‑1 (MQ=255) aGAACTTCGACAACATCCAGAAGGCGATGTATAGCCAGTTCGAAAACACCTTCATGATGTATTTGcc > 1:1396351/1‑67 (MQ=255) aGAACTTCGACAACATCCAGAAGGCGATGTATAGCCAGTTCGAAAACACCTTCATGATGTATTTGcc > 1:2299302/1‑67 (MQ=255) aGAACTTCGACAACATCCAGAAGGCGATGTATAGCCAGTTCGAAAACACCTTCATGATGTATTTGCCgcgc > 1:3482164/1‑71 (MQ=255) aGAACTTCGACAACATCCAGAAGGCGATGTATAGCCAGTTCGAAAACACCTTCATGATGTATTTGCCgcgc > 1:1582637/1‑71 (MQ=255) caaCTTCGAGGCCATGCAAAAGGAGATGTACGCGCAGTTTGAAAACACCTTCATGATGTACCTGCCGCGcc > 1:2376532/2‑71 (MQ=255) aaCTTCGACAACATCCAGAAGGCGATGTATAGCCAGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCt < 1:1312012/71‑1 (MQ=255) aaCTTCGACAACATCCAGAAGGCGATGTATAGCCAGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCt < 1:2457881/71‑1 (MQ=255) aCTTCGAGGCCATGCAAAAGGAGATGTACGGGCAGTTTGACAACACCTTCATGATGTACCTGCCGCGCCtg < 1:3120492/71‑1 (MQ=255) aCTTCGAGGCCATGCAAAAGGAGATGTACGGGCAGTTTGAAAACACCTTCATGATGTACCTGCCGCGCCtg < 1:2015105/71‑1 (MQ=255) aCTTCGAGGCCATGCAAAAGGAGATGTACGGGCAGTTTGAAAACACCTTCATGATGTACCTGCCGCGCCtg > 1:1546133/1‑71 (MQ=255) aCTTCGAGGCCATGCAAAAGGAGATGTACGGGCAGTTTGAAAACACCTTCATGATGTACCTGCCGCGCCtg > 1:614351/1‑71 (MQ=255) ttCGACAACATCCAGAAGGCGATGTATAGCCAGTTCGAAAACACCTTCATGATGTATTTGCcgc < 1:1348976/64‑1 (MQ=255) cGACAACATCCAGAAGGCGATGTATAGCCAGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGc > 1:960591/1‑70 (MQ=255) gACAACATCCAGAAGGCGATGTATAGCCAGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCg < 1:3804234/70‑1 (MQ=255) acaacaTCCAGAAGGCGATGTATAGCCAGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGc < 1:3075465/68‑1 (MQ=255) ggccaTGCAAAAGGAGATGTACGGGCAGTTTGAAAACACCTTCATGATGTACCTGCCGCGCCTGTGCGaa > 1:403939/4‑70 (MQ=255) caacaTCCAGAAGGCGATGTATAGCCAGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAac < 1:3166509/71‑1 (MQ=255) tCCAGAAGGCGATGTATAGCCAGTTCGAAAACACCTTCATGATGTATTTGCCgcgc < 1:1159264/56‑1 (MQ=255) tCCAGAAGGCGATGTATAGCCAGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGc > 1:3526955/1‑71 (MQ=255) tCCAGAAGGCGATGTATAGCCAGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGc > 1:2269706/1‑71 (MQ=255) tCCAGAAGGCGATGTATAGCCAGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGc > 1:1714013/1‑71 (MQ=255) ccAGAAGGCGATGTATAGCCAGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGcc > 1:903867/1‑71 (MQ=255) ccAGAAGGCGATGTATAGCCAGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGcc > 1:304097/1‑71 (MQ=255) cAGAAGGCGATGTATAGCCAGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCt > 1:608740/1‑71 (MQ=255) aGAAGGCGATGTATAGCCAGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTg < 1:489827/71‑1 (MQ=255) aGAAGGCGATGTATAGCCAGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTg < 1:940361/71‑1 (MQ=255) aGAAGGCGATGTATAGCCAGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTg < 1:945051/71‑1 (MQ=255) aGAAGGCGAGGTATAGCCAGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCt > 1:3215519/1‑70 (MQ=255) gAAGGCGATGTATAGCCAGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGa < 1:374529/71‑1 (MQ=255) aGGCGATGTATAGCCAGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑c > 1:1848602/1‑71 (MQ=255) aGGCGATGTATAGCCAGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑c < 1:135266/71‑1 (MQ=255) gCGATGTATAGCCAGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑ccc < 1:3876236/71‑1 (MQ=255) cGATGTATAGCCAGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCg > 1:3273268/1‑71 (MQ=255) gATGTACGGGCAGTTTGAAAACACCTTCATGATGTACCTGCCGCGCCTGTGCGAaca > 1:3508944/1‑57 (MQ=255) tGTATAGCCAGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGc > 1:937686/1‑59 (MQ=255) tGTATAGCCAGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGc > 1:2309667/1‑59 (MQ=255) tGTATAGCCAGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCGGCa > 1:2081803/1‑71 (MQ=255) tGTATAGCCAGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCGGCa > 1:2271441/1‑71 (MQ=255) tataGCCAGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAac > 1:2661842/1‑52 (MQ=255) tataGCCAGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCGGCAtg > 1:2041892/1‑71 (MQ=255) tataGCCAGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCGGCAt < 1:1593906/70‑1 (MQ=255) taGCCAGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCGGCAtgtg > 1:3336679/1‑71 (MQ=255) taGCCAGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCGGCAtgtg < 1:3181309/71‑1 (MQ=255) taGCCAGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCGGCAtgtg < 1:1472040/71‑1 (MQ=255) taGCCAGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCGGCAtgt < 1:3621570/70‑1 (MQ=255) aGCCAGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCGGCAtgtg < 1:3689200/70‑1 (MQ=255) gCCAGTTCGAAAACACCTTCATGATGTATTTGCcg > 1:1766361/1‑35 (MQ=255) gCCAGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCGGCAtgtgt < 1:3867308/70‑1 (MQ=255) gCCAGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCGGCAtgtgt < 1:3018493/70‑1 (MQ=255) ccAGTTCGAAAACACCTTCATGATGTATTTGCCgcgc < 1:2860980/37‑1 (MQ=255) ccAGTTCGAAAACACCTTCATGATGTATTTGCCgcgc < 1:3935445/37‑1 (MQ=255) ccAGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCGGCATGTGTgg < 1:3039361/71‑1 (MQ=255) cAGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCGGCATGTGTGGc < 1:3913462/71‑1 (MQ=255) aGTTTGAAAACACCTTCATGATGTACCTGCCGCGCCTGTGCGAACACTGCCTCAA‑tccca > 1:1090451/1‑58 (MQ=255) aGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTTCGAACACTGCCTGAA‑CCCGGCATGTGTGGc > 1:349795/1‑70 (MQ=255) aGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑cc > 1:3218393/1‑57 (MQ=255) aGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCGGCATGTGTGGc > 1:2971718/1‑70 (MQ=255) aGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCGGCATGTGTGGc > 1:289658/1‑70 (MQ=255) gTTTGAAAACACCTTCATGATGTACCTGCCGCGCCTGTGCGAACACt < 1:2882346/47‑1 (MQ=38) gTTTGAAAACACCTTCATGATGTACCTGCCGCGCCTGTGCGAACACt < 1:1907587/47‑1 (MQ=38) ttCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCGGCATGTGTGGCGAc < 1:3779713/71‑1 (MQ=255) ttCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCGGCATGTGTGGCGAc < 1:1829041/71‑1 (MQ=255) tCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCg < 1:3163158/39‑1 (MQ=255) tCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCgg > 1:2069830/1‑57 (MQ=255) tgAAAACACCTTCATTATGTACCTGCCGCGCCTGTGCGAACACTGCCTCAATCCCAGC‑TGCGTGGCGACCt > 1:741533/2‑71 (MQ=255) tgAAAACACCTTCATGATGTACCTGCCGCGCCTGTGCGAACACTGCCTCAATCCCAGC‑TGCGTGGCGACCt > 1:2829823/2‑71 (MQ=255) cGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCGGCATGTGTGGCGAcc < 1:3935453/70‑1 (MQ=255) cGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCGGCATGTGTGGCGAcc < 1:2028352/70‑1 (MQ=255) cGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCGGCATGTGTGGCGACCt > 1:2973485/1‑71 (MQ=255) gAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGaa < 1:3476178/39‑1 (MQ=255) gAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCGGCATGTGTGGCg < 1:333273/66‑1 (MQ=255) gAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCGGCATGTGTGGCGACCt < 1:834442/70‑1 (MQ=255) aaaaCACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCgg < 1:1960819/54‑1 (MQ=255) aaaaCACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCGGCATGTGTGGCGACCTGc < 1:2907425/71‑1 (MQ=255) aaaaCACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCGGCATGTGTGGCGACCTGc > 1:1628771/1‑71 (MQ=255) aaaCACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCGGCATGTGTGGCGAc > 1:3534493/1‑66 (MQ=255) aaCACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCGGc > 1:2851102/1‑53 (MQ=255) acacCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCGGCATGTGTGGCGACCTGccc > 1:1145245/1‑70 (MQ=255) acCTTCATGATGTACCTGCCGCGCCTGTGCGAACACTGCCTCAATCCCAGC‑TGCGTGGCGACCTGCCCAAg > 1:1576109/1‑71 (MQ=255) cTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCGGCATGTGTGGCGACCTGCCCGAGCg < 1:3489727/71‑1 (MQ=255) cTTCATGATGTACCTGCCTCGCCTGTGCGAACACTGCCTCAATCCCAGC‑TGCGTGGCGACCTGCCCAAGCg < 1:3854788/71‑1 (MQ=255) ttCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCGGCATGTGTGGCg < 1:961350/57‑1 (MQ=255) tCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCGGCATGTGTGGCGACCTGCCCGAGCGGt > 1:740119/1‑71 (MQ=255) tCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCGGCATGTGTGGCGACCTGCCCGAGCGGt > 1:2237282/1‑71 (MQ=255) cATGATGTACCTGCCGCGCCTGTGCGAACACTGCCTCAATCCCAGC‑TGCGTGGCGACCTGCCCAAGCggcg > 1:1591014/1‑69 (MQ=255) atgatgTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCgg > 1:875595/1‑43 (MQ=255) atgatgTACCTGCCGCGCCTGTGCGAACACTGCCTCAATCCCAGC‑TGCGTGGCGACCTGCCCAAGCggcg < 1:231505/70‑3 (MQ=255) tgatgTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCGGCATGTGTGGCg < 1:2988497/53‑1 (MQ=255) tgatgTACCTGCCGCGCCTGTGCGAACACTGCCTCAATCCCAGC‑TGCGGGGCGACCTGCCCAAGCGgcgc < 1:2500398/70‑1 (MQ=255) atgTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCGGc < 1:2487162/41‑1 (MQ=255) atgTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCGGCATGTGTGGCGAc > 1:3899069/1‑53 (MQ=255) atgTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCGGCATGTGTGGCGACCTGCCCGAGCGGTGCGAt < 1:2439608/71‑1 (MQ=255) atgTACCTGCCGCGCCTGTGCGAACACTGCCTCAATCCCAGC‑TGCGTGGCGACCTGCCCAAGCgg > 1:2599389/1‑65 (MQ=255) atgTACCTGCCGCGCCTGTGCGAACACTGCCTCAATCCCAGC‑TGCGTGGCGACCTGCCCAAGCGGCGCTAt > 1:2411484/1‑71 (MQ=255) tgTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCGGCATGTGTGGCGACCTGCCCGAGCGGTGCGAtt < 1:2838530/71‑1 (MQ=255) tATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCGGCAtgtg < 1:181752/43‑1 (MQ=255) tATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCGGCATGTGTGGCGACCTGCCCGAGCg < 1:3267660/61‑1 (MQ=255) | CGAAAGACAAGAACTTCGACAACATCCAGAAGGCGATGTATAGCCAGTTCGAAAACACCTTCATGATGTATTTGCCGCGCCTGTGCGAACACTGCCTGAA‑CCCGGCATGTGTGGCGACCTGCCCGAGCGGTGCGATT > minE/835749‑835885 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |