| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 713380 = | 28 (0.700) | 486 (13.250) | 88/92 | NT | 94.6% | intergenic (‑156/‑29) | ybfF/seqA | conserved hypothetical protein/regulatory protein for replication initiation |
| ? | W3110S.gb | = 4125340 | 30 (0.820) | coding (836/837 nt) | dam | DNA adenine methylase | |||||
Only 100 of 676 total aligned reads displayed.
GCAATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/713452‑713380‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaatTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTGTGC < W3110S.gb/4125340‑4125271 GCAATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTG < 1:3145112/70‑1GCAATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTG < 1:2555381/70‑1GCAATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTG < 1:1291569/70‑1 CAATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGA < 1:1776961/70‑1 ATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑T > 1:2921159/1‑71 TAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TT > 1:790483/1‑71 TAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TT > 1:3299043/1‑71 TAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TT > 1:3255692/1‑71 TAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TT > 1:2195313/1‑71 TAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TT > 1:143443/1‑71 GCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTT < 1:322193/71‑1 GCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTT < 1:12189/70‑1 GCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTT < 1:3179885/70‑1 GCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTT < 1:3668748/70‑1 AGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGC > 1:678607/1‑71 AGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑T < 1:1080474/63‑1 GAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCG < 1:1150323/71‑1 GAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCG < 1:439207/71‑1 GAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCG < 1:405991/71‑1 GAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGC < 1:56602/70‑1 GAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTG > 1:1355911/1‑56 GTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGG < 1:1176709/71‑1 TTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGT > 1:2348490/1‑71 TTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGT < 1:3560308/71‑1 TTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAA > 1:2819878/1‑55 TTCATCATCAACTTCAATCGTTTTCATATTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTT > 1:545801/1‑64 CATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTG > 1:167242/1‑70 CATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAAT > 1:2477803/1‑54 ATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAA < 1:3591889/71‑1 ATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAA < 1:2116650/71‑1 ATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGA < 1:192267/70‑1 ATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGA < 1:657895/70‑1 ATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGA < 1:1598959/70‑1 ATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGA < 1:1528167/70‑1 ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAAC > 1:2687988/1‑70 ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAAC > 1:2653978/1‑70 ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAAC < 1:2779016/70‑1 ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAAC < 1:2260576/70‑1 ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAAC < 1:1632710/70‑1 ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAAC > 1:486493/1‑70 ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAAC > 1:1938502/1‑70 ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTT > 1:2669061/1‑56 TCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGA < 1:2850180/66‑1 AACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGA > 1:2086906/1‑69 CTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCC > 1:1270313/1‑71 CTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGA > 1:3531776/1‑67 CTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAA < 1:2983572/63‑1 CTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGA < 1:1039120/62‑1 TTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCT > 1:3396385/1‑71 TCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTG > 1:2587505/1‑71 TCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTG > 1:198498/1‑71 TCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAA < 1:623997/61‑1 CAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGG < 1:2306267/56‑1 CAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGC > 1:2373122/1‑53 CAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TT > 1:173572/1‑46 TCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTT < 1:2434914/71‑1 TCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGA < 1:181139/56‑1 GTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTG < 1:3329889/70‑1 GTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAA > 1:287911/1‑56 GTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGA < 1:1573464/54‑1 GTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCG > 1:3639674/1‑47 TTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGA > 1:3030908/1‑56 TCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACA > 1:2214892/1‑70 TCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACA < 1:2744454/70‑1 TCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACA > 1:1698953/1‑70 ATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGA > 1:885633/1‑53 TCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTC < 1:2149363/39‑1 TCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTC < 1:1330880/39‑1 AATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCC < 1:1882036/68‑1 ATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGC < 1:1758450/66‑1 TCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAG < 1:914286/71‑1 CAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCA > 1:1001154/1‑65 CAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAA > 1:7339/1‑41 GCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAA > 1:1469277/1‑37 GCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAA > 1:375841/1‑37 GCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAA > 1:3273436/1‑37 GCAGTGTCTTAGCTGAATTA‑TTTTTTCG‑GGGTGAAA > 1:361873/1‑36 GTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAG > 1:3447236/1‑62 GTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGA < 1:335833/37‑1 TGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACC > 1:3072981/1‑71 TGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACA < 1:506565/51‑1 GTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCT > 1:3810657/1‑71 TCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT > 1:710904/1‑71 TCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT > 1:2522300/1‑71 TCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT > 1:311995/1‑71 TCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCT < 1:981614/70‑1 TTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTT > 1:3093155/1‑71 AGCTGAATTATTTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTT < 1:3740141/70‑1 AGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTA > 1:1405717/1‑71 AGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTT < 1:856973/70‑1 AGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTT < 1:1903311/70‑1 AGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTT < 1:3003209/69‑1 GCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTA < 1:3847157/70‑1 GCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTA < 1:3714773/70‑1 GCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTA < 1:94227/70‑1 CTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACG > 1:2162838/1‑71 CTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAA > 1:3503641/1‑44 GAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTG > 1:3413826/1‑71 AATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTG > 1:2066322/1‑70 TTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT < 1:2020711/60‑1 GCAATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/713452‑713380‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaatTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTGTGC < W3110S.gb/4125340‑4125271 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |