| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2172309 = | NA (NA) | 56 (1.460) | 35/96 | NT | 100% | pseudogene (1562/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | W3110S.gb | 3932930 = | 0 (0.000) | coding (219/1608 nt) | dppA | dipeptide transporter | |||||
GTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑ag‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/2172377‑2172309‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTA > W3110S.gb/3932930‑3933000 GTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑A < 1:3438778/70‑1GTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑A < 1:2629552/70‑1GTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑A < 1:2701458/70‑1GTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑A < 1:1191064/70‑1GTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑A < 1:2554365/70‑1 TCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑A < 1:1184273/69‑1 ATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑Aagt > 1:3160911/1‑67 TGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATt < 1:1399657/71‑2 TGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATt < 1:2459026/71‑2 TGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGAT > 1:1450003/1‑70 AGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCC < 1:3311503/70‑1 ACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑A > 1:3378950/1‑58 CTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTC > 1:1224498/1‑71 TCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑A > 1:3297219/1‑55 CTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGC > 1:1116032/1‑71 CTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑A > 1:1318567/1‑54 TGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCT > 1:2776590/1‑71 ACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGA < 1:3273493/71‑1 ACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCT < 1:2810912/69‑1 ACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCT < 1:959209/69‑1 ACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCT < 1:517373/69‑1 ACTGAGAGTATACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGA < 1:148385/71‑1 CTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAA < 1:3241398/71‑1 CTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAA < 1:3069792/71‑1 GAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGA < 1:3379791/68‑1 GAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑A > 1:1239641/1‑48 AGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAG < 1:3523326/71‑1 TTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAA < 1:701260/64‑1 TTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAA < 1:1326688/64‑1 TTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAA < 1:475312/64‑1 TTTACTCACTTAGCCGCGTGTCCACTATCGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGA < 1:1864884/63‑1 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGG > 1:132180/1‑69 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGG > 1:136639/1‑69 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑A > 1:3067307/1‑41 CTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGT < 1:1165300/71‑1 CTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGT < 1:3785035/71‑1 CTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAG > 1:1206430/1‑63 CACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCC > 1:102831/1‑44 ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAG > 1:701159/1‑71 TTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGC > 1:1410497/1‑70 TAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGCGAAGTCAGCG > 1:1063783/1‑70 AGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCG < 1:2139934/69‑1 GCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAA < 1:3350355/70‑1 CCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGA < 1:3226891/71‑1 GCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGT < 1:2657049/53‑1 GTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGT < 1:1833425/71‑1 GTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGG > 1:3598745/1‑70 GTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGAGAAGTCAGCGAAGACGGT < 1:2037938/71‑1 TGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTA < 1:241777/71‑1 TCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAA < 1:2533491/71‑1 TCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAA < 1:2136660/70‑1 CACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAC < 1:2013189/71‑1 CTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCT < 1:2748840/71‑1 CTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACC > 1:2457816/1‑70 CTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTA < 1:2229327/65‑1 CTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCG < 1:3654670/56‑1 CTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCG < 1:1515716/56‑1 CTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGG < 1:698122/47‑1 CTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGG < 1:319108/47‑1 CTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGG < 1:2533870/47‑1 TATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTA > 1:1009926/1‑71 TATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAA < 1:1213837/66‑1 TATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAA < 1:2925756/66‑1 ATTGCTGGGTAAGATC‑AGTGATACCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTA > 1:1403222/1‑70 TTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATA > 1:1971047/1‑71 TTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTAT < 1:3460874/70‑1 TTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTAT < 1:135777/70‑1 GCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACC > 1:122886/1‑71 GGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCC < 1:2442140/71‑1 GTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAC < 1:18568/59‑1 TAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCA < 1:2651751/70‑1 AGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTA < 1:3615999/52‑1 GATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCT > 1:3286186/1‑70 TC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCG > 1:2835272/1‑71 TC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAA < 1:3449530/42‑1 AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTA < 1:340005/71‑1 AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGA > 1:3088649/1‑42 AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGA > 1:1632338/1‑42 GTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑ag‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/2172377‑2172309‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTA > W3110S.gb/3932930‑3933000 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |