| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 314453 = | 7 (0.300) | 30 (1.340) +TC |
7/108 | NT | 89.9% | coding (873/888 nt) | eaeH | attaching and effacing protein, pathogenesis factor |
| ? | W3110S.gb | 3932930 = | 0 (0.000) | coding (219/1608 nt) | dppA | dipeptide transporter | |||||
TGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/314513‑314453‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAC > W3110S.gb/3932930‑3932980 ||| TGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCC > 1:334426/1‑71TGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCC > 1:1964852/1‑71TGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCC > 1:189110/1‑71TGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCC > 1:1680213/1‑71TGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATC > 1:1358122/1‑70 GAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCC > 1:710015/1‑71 GAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCC > 1:198967/1‑71 GAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCC > 1:1374952/1‑71 GAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCC > 1:1745740/1‑71 GAGTCACCTCTGACTGAGAGTTTACTCACTTAGACGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCC > 1:18143/1‑71 GTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATtaa < 1:1103289/70‑4 CTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAA < 1:1833700/71‑1 AGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAA < 1:1597475/69‑1 AGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAA < 1:815915/69‑1 AGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAA < 1:1140545/69‑1 AGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAA < 1:1207769/69‑1 AGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAA < 1:1083813/69‑1 AGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAA < 1:1830215/69‑1 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGG > 1:1840394/1‑69 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGG > 1:1901889/1‑69 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGG > 1:1938721/1‑69 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGG > 1:555009/1‑69 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGG > 1:1703021/1‑69 CCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGA < 1:24603/71‑1 CCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGA < 1:50531/71‑1 CACTATTGCTGGGTAAGTTC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAC > 1:1283921/1‑71 CACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAC > 1:1385283/1‑71 CACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAC > 1:655106/1‑71 CACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAC > 1:1125482/1‑71 CACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAA > 1:1886458/1‑70 ||| TGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/314513‑314453‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAC > W3110S.gb/3932930‑3932980 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |