| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | W3110S.gb | 2,172,235 | C→T | pseudogene (42/447 nt) pseudogene (1636/2041 nt) |
gatR ← gatR ← |
DNA‑binding transcriptional regulator, N‑ter fragment; ECK2083:JW5340:b2087 DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 2,172,235 | 0 | C | T | 100.0% | 268.0 / NA | 88 | pseudogene (42/447 nt) pseudogene (1636/2041 nt) | gatR gatR | DNA‑binding transcriptional regulator, N‑ter fragment; ECK2083:JW5340:b2087 DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (48/40); total (48/40) | |||||||||||
CAGACGACCAGAGTAATGTCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACCGTGATA‑TTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAA > W3110S.gb/2172167‑2172302 | caGACGACCAGAGTAATGTCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGt > 1:333479/1‑71 (MQ=255) gacgacCAGAGTAATGTCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGa > 1:817493/1‑71 (MQ=255) gacCAGAGTAATGTCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGata‑t < 1:1022906/71‑1 (MQ=255) cAGAGTAATGTCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑tttt > 1:3689711/1‑71 (MQ=255) gTAATGTCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGc > 1:2889317/1‑71 (MQ=255) tAATGTCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCg > 1:1123992/1‑71 (MQ=255) aTGTCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGt > 1:500210/1‑71 (MQ=255) aTGTCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGt > 1:615874/1‑71 (MQ=255) aTGTCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGt > 1:2968408/1‑71 (MQ=255) aTGTCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGt > 1:2546451/1‑71 (MQ=255) aTGTCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGt > 1:682558/1‑71 (MQ=255) aTGTCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGt < 1:2388212/71‑1 (MQ=255) aTGTCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGt > 1:3570523/1‑71 (MQ=255) aTGTCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGt > 1:4091765/1‑71 (MQ=255) aTGTCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGt < 1:1558942/71‑1 (MQ=255) aTGTCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGt < 1:1555322/71‑1 (MQ=255) aTGTCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGt > 1:1089139/1‑71 (MQ=255) tGTCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGa < 1:436672/57‑1 (MQ=255) tCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACtgtg > 1:3526544/1‑54 (MQ=255) tCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGa > 1:900592/1‑55 (MQ=255) tCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCa > 1:11093/1‑70 (MQ=255) tCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCAt > 1:416900/1‑71 (MQ=255) tCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCAt > 1:1065189/1‑71 (MQ=255) tCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCAt > 1:870074/1‑71 (MQ=255) tCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCAt > 1:4244467/1‑71 (MQ=255) tCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCAt > 1:2806393/1‑71 (MQ=255) tCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCAt > 1:1836410/1‑71 (MQ=255) tCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCAt > 1:3429432/1‑71 (MQ=255) tCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCAt > 1:816441/1‑71 (MQ=255) tCTTAATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCa > 1:2878275/1‑70 (MQ=255) tttATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑tttt > 1:3542631/1‑59 (MQ=255) tttATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCAtt > 1:1992863/1‑70 (MQ=255) tATTTTCGGAAAGGGCAAACGCTGCCTGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCAtt < 1:561502/68‑1 (MQ=255) tATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCAtt < 1:489607/68‑1 (MQ=255) tATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCATTaa < 1:3242311/70‑1 (MQ=255) tATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCATTaa < 1:3221875/70‑1 (MQ=255) tATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCATTAAt > 1:1630142/1‑71 (MQ=255) tATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCATTAAt > 1:870116/1‑71 (MQ=255) aTTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATATTTTTTGGCGGGCATTaa < 1:1398064/70‑1 (MQ=255) aTTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCATTAAt < 1:1109839/70‑1 (MQ=255) ttttCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTCGCGGTCATTAATcc < 1:793475/71‑1 (MQ=255) aaGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCATTAATCCTTCGGCGa > 1:4204638/1‑71 (MQ=255) aaGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCATTAATCCTTCGGCGa > 1:1152771/1‑71 (MQ=255) aaGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCATTAATCCTTCGGCGa > 1:1854090/1‑71 (MQ=255) aGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATATTTTTTGGCGGTCATTAATCCTTCGGCGa > 1:1022978/1‑71 (MQ=255) gggCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGt < 1:557096/52‑1 (MQ=255) ggCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCATTAATCCTTCGGCGAt > 1:4658396/1‑69 (MQ=255) ggCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCATTAATCCTTCGGCGAt > 1:328478/1‑69 (MQ=255) ggCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCATTAATCCTTCGGCGAt > 1:1144236/1‑69 (MQ=255) ggCAAACGCTGCCGGGAGACTGTTGCTAATCACTGTGata‑t > 1:539028/1‑41 (MQ=255) gCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCATTaa > 1:1696465/1‑56 (MQ=255) gCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCATTAATCCTTCGGCGATAAg < 1:3562393/71‑1 (MQ=255) gCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCATTAATCCTTCGGCGATAAg > 1:1419451/1‑71 (MQ=255) gCAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCATTAATCCTTCGGCGATAAg < 1:2023625/71‑1 (MQ=255) cAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCa > 1:75536/1‑51 (MQ=255) cAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCATTAATCCTTCGGCGATAAg > 1:145795/1‑70 (MQ=255) cAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCATTAATCCTTCGGCGATAAGc < 1:2170225/71‑1 (MQ=255) cAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCATTAATCCTTCGGCGATAAGc < 1:3437904/71‑1 (MQ=255) cAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCATTAATCCTTCGGCGATAAGc < 1:1592283/71‑1 (MQ=255) cAAACGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCATTAATCCTTCGCCGATAAGc < 1:3619500/71‑1 (MQ=255) aaCGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCATTAATCCTTCGGCGATAAGCAt < 1:270386/71‑1 (MQ=255) aaCGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCATTAATCCTTCGGCGATAAGCAt < 1:4398607/71‑1 (MQ=255) aaCGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCATTAATCCTTCGGCGATAAGCAt < 1:4051309/71‑1 (MQ=255) aaCGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCATTAATCCTTCGGCGATAAGCAt < 1:2434564/71‑1 (MQ=255) aaCGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCATTAATCCTTCGGCGATAAGCAt < 1:279515/71‑1 (MQ=255) cGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCATTaa < 1:1642275/51‑1 (MQ=255) cGCTGCCGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCATTaa < 1:606322/51‑1 (MQ=255) ccGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCg < 1:1990465/69‑1 (MQ=255) ccGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCg < 1:105869/69‑1 (MQ=255) ccGGGAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCg < 1:530484/69‑1 (MQ=255) ggAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCATTAATCCTTCGGCGATAAg < 1:1227727/58‑1 (MQ=255) ggAGACTGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCATTAATCCTTCGGCGATAAg < 1:4500325/58‑1 (MQ=255) tGTTGGTAATCACTGTGATA‑TTTTTGGCGGTCATTAATCCTTCGGCGATAAGCa > 1:992952/1‑54 (MQ=255) gTTGGTAATCACTGTGATA‑TTTTTGGCGGTCATTaa > 1:2510445/1‑36 (MQ=255) gTTGGTAATCACTGTGATA‑TTTTTGGCGGTCATTaa > 1:2005323/1‑36 (MQ=255) gTTGGTAATCACTGTGATA‑TTTTTGG‑GGTCATTaa > 1:3951227/1‑35 (MQ=25) ttGGTAATCACTGTGATA‑TTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCt < 1:1551510/68‑1 (MQ=255) ggTAATCACTGTGATA‑TTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTc > 1:3673889/1‑69 (MQ=255) gTAATCACTGTGATA‑TTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCgag < 1:539566/71‑1 (MQ=255) aaTCACTGTGATA‑TTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTc > 1:1068364/1‑59 (MQ=255) aTCACTGTGATA‑TTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGaa > 1:2396948/1‑70 (MQ=255) aTCACTGTGATA‑TTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAAt < 1:3845675/71‑1 (MQ=255) aTCACTGTGATA‑TTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAAt < 1:587985/71‑1 (MQ=255) aTCACTGTGATA‑TTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAAt < 1:1383021/71‑1 (MQ=255) aTCACTGTGATA‑TTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAAt < 1:1322007/71‑1 (MQ=255) aTCACTGTGATA‑TTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAAt < 1:1212213/71‑1 (MQ=255) tCACTGTGATA‑TTTTTGGCGGTCATTAATCCTTCGGCGATAAGc < 1:320674/44‑1 (MQ=255) tCACTGTGATA‑TTTTTGGCGGTCATTAATCCTTCGGCGATAAGc < 1:2229200/44‑1 (MQ=255) cACTGTGATA‑TTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATaa > 1:4216455/1‑71 (MQ=255) | CAGACGACCAGAGTAATGTCTTTATTTTCGGAAAGGGCAAACGCTGCCGGGAGACTGTTGGTAATCACCGTGATA‑TTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAA > W3110S.gb/2172167‑2172302 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |