| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 314453 = | 56 (1.040) | 63 (1.210) +TC |
11/122 | 0.3 | 69.9% | coding (873/888 nt) | eaeH | attaching and effacing protein, pathogenesis factor |
| ? | W3110S.gb | 3932930 = | 0 (0.000) | coding (219/1608 nt) | dppA | dipeptide transporter | |||||
TTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/314521‑314453‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCAT > W3110S.gb/3932930‑3932993 ||| TTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT < 1:3843721/70‑1TTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT < 1:2296801/70‑1TTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT < 1:2195364/70‑1TTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT < 1:1331484/70‑1TTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT < 1:703575/70‑1 TGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC < 1:3582960/70‑1 TGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC < 1:2581424/70‑1 TGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC < 1:3795277/70‑1 TGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC < 1:4060881/70‑1 TGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC < 1:1210157/70‑1 TGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC < 1:4090130/70‑1 TGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC < 1:184989/70‑1 TGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC < 1:1506251/70‑1 TGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC < 1:1847756/70‑1 TGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC < 1:1777662/70‑1 GTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC < 1:3305792/69‑1 ATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGA > 1:2620949/1‑71 ATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGA > 1:304768/1‑71 ATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGA > 1:2333062/1‑71 AGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATtaa < 1:3408943/71‑4 AGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATtaa < 1:2572853/71‑4 AGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGATtaa < 1:768526/71‑4 ACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑A < 1:2697235/58‑1 ACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑A < 1:946781/58‑1 ACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑A < 1:2904927/58‑1 ACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑A < 1:10519/58‑1 ACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑A < 1:111314/58‑1 ACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑A < 1:1155556/58‑1 ACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑A < 1:1197081/58‑1 ACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑A < 1:313136/58‑1 ACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑A < 1:1254768/58‑1 ACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑A < 1:1571124/58‑1 ACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑A < 1:739463/58‑1 CTCTGACTGAGAGTTTACTCACTTAGGCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTC < 1:2790136/71‑1 CTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTC < 1:3689986/71‑1 TCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCG > 1:2912737/1‑71 TCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCG > 1:2899061/1‑71 TCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCG > 1:3492088/1‑71 TCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCG > 1:759326/1‑71 TCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCG > 1:2090182/1‑71 TCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCG > 1:2081925/1‑71 TCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCG > 1:1800664/1‑71 TCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTC < 1:3779133/70‑1 GAGAGTTTACTCACTTAGGCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAA < 1:238042/70‑1 AGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAA < 1:1102979/68‑1 AGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAA < 1:2526169/68‑1 AGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAA < 1:927861/68‑1 AGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAA < 1:3620966/68‑1 AGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAA < 1:3927504/68‑1 TTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT < 1:4120752/41‑1 TTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT < 1:965547/41‑1 TTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT < 1:2658884/41‑1 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑A > 1:4036323/1‑41 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑A > 1:2034100/1‑41 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑A > 1:1835454/1‑41 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑A > 1:111112/1‑41 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑A > 1:3552805/1‑41 CTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGC > 1:687037/1‑52 CTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGC > 1:537711/1‑52 CTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGC > 1:542759/1‑52 CTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGC > 1:2908696/1‑52 CTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGC > 1:1310362/1‑52 CTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGC > 1:3386340/1‑52 CCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGA < 1:3191598/71‑1 CCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCA < 1:3362438/64‑1 TCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAA > 1:3294614/1‑70 TCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAA > 1:4008957/1‑70 TCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAA < 1:3345018/44‑1 CACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAA < 1:1055718/70‑1 CACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAA < 1:2349919/70‑1 CACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAA < 1:2364947/70‑1 CACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAA < 1:3618152/70‑1 CACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAA < 1:352377/70‑1 GTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCA < 1:1754070/43‑1 TAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCAT > 1:2533832/1‑71 TAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCAT > 1:1729486/1‑71 TAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCAT > 1:2921149/1‑71 TAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCAT > 1:1107312/1‑71 TAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCA > 1:2749255/1‑70 TAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCA > 1:3416064/1‑70 TAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGG > 1:2459070/1‑52 TAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGA < 1:1789193/49‑1 ||| TTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/314521‑314453‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCAT > W3110S.gb/3932930‑3932993 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |