| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 70061 = | 57 (1.360) | 251 (7.720) +CGCGTACAACT |
51/78 | NT | 84.1% | intergenic (‑13/‑326) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 236044 = | 65 (1.550) | intergenic (‑42/‑23) | rnhA/dnaQ | ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit | |||||
Only 100 of 432 total aligned reads displayed.
AGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/70130‑70061‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCA > W3110S.gb/236044‑236112 ||||||||||| TTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCG < 1:2205099/71‑1 TTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCG < 1:76090/71‑1 TTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCG > 1:2614936/1‑71 TTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCG < 1:238069/71‑1 GCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTA < 1:2495706/70‑1 CGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACA < 1:3421319/71‑1 GATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAAC > 1:23378/1‑71 ATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTAC < 1:518418/67‑1 ATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTAC < 1:596400/67‑1 TCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACT > 1:2811790/1‑70 TCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACT > 1:715014/1‑70 CTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGAGGCGTACAA > 1:3679955/1‑66 TACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAG > 1:2321055/1‑71 ACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGT > 1:3200401/1‑71 ACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAG > 1:2062043/1‑70 GACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGA > 1:1316461/1‑71 CGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACA > 1:2097769/1‑71 GCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTAC < 1:562326/55‑1 GCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTAC < 1:1822643/55‑1 CTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATA < 1:3376354/71‑1 CTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATA < 1:3850685/71‑1 CTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACAT > 1:1459748/1‑70 TTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATA < 1:1487209/70‑1 TTTATCGCAACTCTCTACTGTTTCTCCATACCCGTTTTTTTTGGACGCGTACAACTCAAGTCTGACATA < 1:2472212/69‑1 TTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAA < 1:1336716/70‑1 TTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAA < 1:620997/69‑1 TTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAA < 1:2966920/69‑1 TTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAA < 1:2721029/69‑1 TATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATG < 1:972523/70‑1 TATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAATCTGACATAAATG < 1:1792806/70‑1 GCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC < 1:3309314/71‑1 GCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC < 1:159472/71‑1 GCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC < 1:1516815/71‑1 GCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGA > 1:1572461/1‑58 CTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATG < 1:1970609/71‑1 CTCTCTACTGTTTCTCCATACCCG‑TTTCTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC < 1:1982677/67‑1 TCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTAT > 1:927036/1‑69 TCTCTACTGTTTCTCCATACCCC‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATG < 1:2698111/61‑1 CTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG > 1:2233138/1‑71 CTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG > 1:1629674/1‑71 CTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTA > 1:1402758/1‑67 CTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAA > 1:3278194/1‑58 CTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGA > 1:1376313/1‑52 CTCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAA > 1:376235/1‑46 TCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG > 1:3142963/1‑70 TCTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTA > 1:3511118/1‑37 CTACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAA > 1:453630/1‑44 TACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG < 1:882866/68‑1 TACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG < 1:3161225/68‑1 TACTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATA < 1:275681/53‑1 CTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCA > 1:236855/1‑68 CTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCA > 1:3061127/1‑68 CTGTTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCT > 1:2522598/1‑45 TTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAA > 1:840551/1‑71 TTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAA > 1:672056/1‑71 TTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC < 1:61333/69‑1 TTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGA > 1:2303065/1‑53 TTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAA < 1:3819862/49‑1 TTTCTCCATACCCG‑TTTTTTTGGACGCGTACAACTC < 1:1864642/36‑1 TCTCCATAGCCG‑TTTTTTTGGACGCGTACAACTCAA > 1:2891517/1‑36 TCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT < 1:3984702/70‑1 TCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT < 1:2631557/70‑1 TCTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAA > 1:3340744/1‑69 TCTCCATACCCG‑‑TTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCA > 1:3917345/1‑62 CTCCATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTA > 1:1169752/1‑71 CATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTA < 1:1715921/68‑1 CATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTA < 1:1659519/68‑1 CATACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACAGCTATGAGCACTGCAATTA < 1:3540823/68‑1 TACCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACAT < 1:1217727/39‑1 CCCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC > 1:4054818/1‑69 CCG‑TTTTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAG < 1:25876/71‑1 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGT > 1:2843684/1‑71 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGT > 1:2177996/1‑71 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGT > 1:3625857/1‑71 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGT > 1:126417/1‑71 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCG < 1:3463197/70‑1 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCG < 1:734513/70‑1 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTA > 1:3784845/1‑58 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAAT > 1:3598151/1‑56 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGAC > 1:1688544/1‑38 GACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGc > 1:3724386/1‑70 GACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGc > 1:3079714/1‑70 TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGct < 1:3659412/66‑3 ACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGc > 1:2011980/1‑69 ACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGc < 1:3020743/70‑2 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAA > 1:1951874/1‑71 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAA > 1:1079237/1‑71 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAA > 1:2918003/1‑71 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTACTCGCTACCGCAA > 1:1006154/1‑71 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGAT > 1:941457/1‑54 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC > 1:225407/1‑49 ACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAAC > 1:2668172/1‑70 ACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAAC > 1:1916132/1‑70 ACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAAC > 1:2032748/1‑70 ACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACA > 1:3956983/1‑44 CTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGca < 1:2868687/67‑3 CTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGCAACCA > 1:2440776/1‑71 CTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAA > 1:2409066/1‑38 CTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAA > 1:903661/1‑38 CTCAAGTCTGACATAAATGACCGCTATGAGCACTGC < 1:1060865/36‑1 ||||||||||| AGATTAGCGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCG‑TTTTTTTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/70130‑70061‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAAACCA > W3110S.gb/236044‑236112 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |