| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 713380 = | 45 (1.160) | 112 (3.150) | 27/94 | NT | 70.4% | intergenic (‑156/‑29) | ybfF/seqA | conserved hypothetical protein/regulatory protein for replication initiation |
| ? | W3110S.gb | = 4125340 | 53 (1.490) | coding (836/837 nt) | dam | DNA adenine methylase | |||||
Only 100 of 174 total aligned reads displayed.
GCAATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/713452‑713380‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaatTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTGTGC < W3110S.gb/4125340‑4125271 AATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAAT < 1:3010395/71‑1 ATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTG < 1:3629628/67‑1 TAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TT > 1:3717481/1‑71 TAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TT > 1:1631077/1‑71 GCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTT > 1:3111366/1‑71 TGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAA < 1:1214140/62‑1 TGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAA < 1:2406358/62‑1 TGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAA < 1:3504990/62‑1 GAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCG < 1:1836980/71‑1 GAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCG < 1:3608032/71‑1 GAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCG < 1:2617472/71‑1 GTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGG > 1:2567332/1‑71 TTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGT > 1:1325343/1‑71 TTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGT > 1:168382/1‑71 CATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTG > 1:2749384/1‑70 CATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGT > 1:3337414/1‑69 ATCATCAACTTCAATCGTTTTCATCTTAATCCAGTTCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGA < 1:451342/70‑1 ATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGA < 1:3242559/70‑1 ATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGA < 1:978845/70‑1 ATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGA < 1:3486295/70‑1 ATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGA < 1:3141494/70‑1 ATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGA < 1:465381/70‑1 ATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGA < 1:840211/70‑1 ATCATCAACTTCAATCGTTTTAATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGA < 1:1597427/70‑1 TCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGA < 1:3075827/50‑1 TCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGA < 1:2031926/50‑1 ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTATTTTTTTCGCGGGTGAAAC > 1:42647/1‑71 ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAAC < 1:1425721/70‑1 ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAAC < 1:2256832/70‑1 ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAA > 1:33955/1‑69 ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAA > 1:1136339/1‑69 ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAA > 1:45991/1‑69 ATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAAT > 1:3303064/1‑50 TCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGA < 1:3173203/71‑1 TCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGA < 1:243598/71‑1 AACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACT > 1:2841897/1‑71 CTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTG < 1:228956/42‑1 CTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTG < 1:2332031/42‑1 CTTCAATCGTTTTCATCTTAATCCAGTGCAGTGGCTTAGCTG < 1:1636511/42‑1 TTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAA > 1:3381026/1‑63 TTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAA > 1:2466713/1‑63 TTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAA > 1:2191056/1‑63 TTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTG < 1:1911975/41‑1 TTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTG < 1:1781927/41‑1 TCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTG > 1:2513965/1‑71 TCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGC > 1:1013915/1‑54 CAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGG > 1:1303956/1‑71 CGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAA > 1:3639532/1‑37 CGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGA > 1:2227415/1‑36 TTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGA < 1:208112/53‑1 TTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAAT < 1:177716/36‑1 TTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAAT < 1:955388/36‑1 TTCGTCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTAC > 1:3373987/1‑70 TTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTAC > 1:1926570/1‑70 TTCATCTTAATCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTAC > 1:2912509/1‑70 TCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAG < 1:2742789/71‑1 TCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAG < 1:2641889/71‑1 TCCAGTGCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAG < 1:2002907/71‑1 GCAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAA > 1:960943/1‑37 aAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTC > 1:15544/2‑70 CAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTC > 1:1056535/1‑70 CAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTC > 1:1230235/1‑70 CAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTC > 1:1302583/1‑70 CAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTC > 1:1416733/1‑70 CAGTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTC > 1:736405/1‑70 GTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCAC > 1:1231213/1‑71 GTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCAC < 1:3586156/71‑1 GTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCAC < 1:3567883/71‑1 GTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCAC < 1:215800/71‑1 GTGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCAC > 1:89588/1‑71 TGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACC > 1:1548563/1‑71 TGTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACC > 1:3054493/1‑71 GTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCT > 1:806166/1‑71 GTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCT > 1:3307209/1‑71 GTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCT > 1:327939/1‑71 GTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCT > 1:695647/1‑71 GTCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCT > 1:877795/1‑71 TCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT > 1:80229/1‑71 TCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT > 1:1115459/1‑71 TCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT > 1:842645/1‑71 TCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT > 1:590714/1‑71 TCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT > 1:944664/1‑71 TCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT > 1:116473/1‑71 TCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT > 1:2982049/1‑71 TCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT > 1:395383/1‑71 TCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT > 1:1722928/1‑71 TCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT > 1:2745613/1‑71 TCTTAGCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTT > 1:2844401/1‑71 GCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTAC > 1:151596/1‑71 GCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTA < 1:1271527/70‑1 GCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCAC > 1:76760/1‑63 GCTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGATCGTCCACCTTTTTA < 1:2718196/70‑1 GCTGAATTA‑TTTTTTCGCGGGGGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTA < 1:2938286/70‑1 CTGAATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACG < 1:3554596/71‑1 AATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTGT < 1:2509992/71‑1 AATTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTGT < 1:2678432/71‑1 TTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTGTGC > 1:2065477/1‑71 TTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTGTGC > 1:242046/1‑71 TTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTGT < 1:2360977/69‑1 TTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGT > 1:1075168/1‑53 GCAATATAGCTGTAGAGTTCATCATCAACTTCAATCGTTTTCATCTTAATCCAGTGCAGTGTCTTAGCTGAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/713452‑713380‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaatTA‑TTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGTTCGTCCACCTTTTTACGTGTGC < W3110S.gb/4125340‑4125271 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |