| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,514,474 | G→A | 36.7% | G339G (GGC→GGT) | purF ← | amidophosphoribosyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,514,474 | 0 | G | A | 36.7% | 34.3 / 32.1 | 57 | G339G (GGC→GGT) | purF | amidophosphoribosyltransferase |
| Reads supporting (aligned to +/- strand): ref base G (19/17); new base A (13/8); total (32/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.86e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TTTATCGCGGAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGTTTTTAACGAAGCCCTGGCGG > minE/1514408‑1514528 | tttATCGCGGAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGcc > 1:1718063/1‑69 (MQ=255) cTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATaaa < 1:2558090/69‑1 (MQ=255) cTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATaaa < 1:2212129/69‑1 (MQ=255) cTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATaaa < 1:3122923/69‑1 (MQ=255) cTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATaaa < 1:2694593/69‑1 (MQ=255) cTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATaaa < 1:2659569/69‑1 (MQ=255) cTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATaaa < 1:558108/69‑1 (MQ=255) cTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATaaa < 1:2401107/69‑1 (MQ=255) cTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCAGGCATGATaaa < 1:1929870/69‑1 (MQ=255) cGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAgg < 1:2768743/69‑1 (MQ=255) gcgcGGTTGGCATTCAGTTTACGGCGCAGGGACTTACGACGCAGCTGCTGGCCCGGCATGATaaa < 1:1156471/65‑1 (MQ=255) tGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCaa < 1:2597484/69‑1 (MQ=255) tGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCaa < 1:1467010/69‑1 (MQ=255) tGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCaa < 1:50630/69‑1 (MQ=255) cAGTTTGCGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCg > 1:439275/1‑69 (MQ=255) cAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAGGGTGCGGCCAACATAGCg > 1:795112/1‑69 (MQ=255) cAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCg > 1:37423/1‑69 (MQ=255) cAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCg > 1:2981604/1‑69 (MQ=255) cAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCg > 1:3050994/1‑69 (MQ=255) cAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCg > 1:3405561/1‑69 (MQ=255) cAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCg > 1:849744/1‑69 (MQ=255) cAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCg > 1:473939/1‑69 (MQ=255) cAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCg > 1:513813/1‑69 (MQ=255) cAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCg > 1:723794/1‑69 (MQ=255) cAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCg > 1:1005773/1‑69 (MQ=255) cAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCg > 1:2058423/1‑69 (MQ=255) gTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCgg < 1:3289844/68‑1 (MQ=255) tACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGttt > 1:1085613/1‑68 (MQ=255) tACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGttt > 1:747487/1‑68 (MQ=255) tACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGttt > 1:1153366/1‑68 (MQ=255) tACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGttt > 1:2910099/1‑68 (MQ=255) tACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGttt > 1:2696448/1‑68 (MQ=255) tACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGttt > 1:2368440/1‑68 (MQ=255) cGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGTTTTTAACGAAGc < 1:215394/69‑1 (MQ=255) cGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGTTTTTAACGAAGc < 1:3084279/69‑1 (MQ=255) cGGACTTACGACGCAGCTGCTGACCCGGCATGATGAAGGTGCGGCCAACATAACGGTTTTTAACGAAg > 1:2363968/1‑68 (MQ=255) cGGACTTACGACGCAGCTGCTGACCCGGCATGATGAAGGTGCGGCCAACATAACGGTTTTTAACGAAGc > 1:2299822/1‑69 (MQ=255) cGGACTTACGACGCAGCTGCTGACCCGGCATGATGAAGGTGCGGCCAACATAACGGTTTTTAACGAAGc > 1:2554709/1‑69 (MQ=255) cGGACTTACGACGCAGCTGCTGACCCGGCATGATGAAGGTGCGGCCAACATAACGGTTTTTAACGAAGc > 1:1122243/1‑69 (MQ=255) cGGACTTACGACGCAGCTGCTGACCCGGCATGATGAAGGTGCGGCCAACATAACGGTTTTTAACGAAGc > 1:258230/1‑69 (MQ=255) cGGACTTACGACGCAGCTGCTGACCCGGCATGATGAAGGTGCGGCCAACATAACGGTTTTTAACGAAGc > 1:703878/1‑69 (MQ=255) cGGACTTACGACGCAGCTGCTGACCCGGCATGATGAAGGTGCGGCCAACATAACGGTTTTTAACGAAGc > 1:571533/1‑69 (MQ=255) cGGACTTACGACGCAGCTGCTGACCCGGCATGATGAAGGTGCGGCCAACATAACGGTTTTTAACGAAGc > 1:1783858/1‑69 (MQ=255) cGGACTTACGACGCAGCTGCTGACCCGGCATGATGAAGGTGCGGCCAACATAACGGTTTTTAACGAAGc > 1:1873110/1‑69 (MQ=255) cGGACTTACGACGCAGCTGCTGACCCGGCATGATGAAGGTGCGGCCAACATAACGGTTTTTAACGAAGc > 1:2383278/1‑69 (MQ=255) cGGACTTACGACGCAGCTGCTGACCCGGCATGATGAAGGTGCGGCCAACATAACGGTTTTTAACGAAGc > 1:2610367/1‑69 (MQ=255) cGGACTTACGACGCAGCTGCTGACCCGGCATGATGAAGGTGCGGCCAACATAACGGTTTTTAACGAAGc > 1:2152108/1‑69 (MQ=255) cGGACTTACGACGCAGCTGCTGACCCGGCATGATGAAGGTGCGGCCAAAATAACGGTTTTTAACGAAGc > 1:1194744/1‑69 (MQ=255) ggACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGTTTTTAACGAAGc < 1:2445857/68‑1 (MQ=255) gacgCAGCTGCTGACCCGGCATGATGAAGGTGCGGCCAACATAACGGTTTTTAACGAAGCCCTGGCgg < 1:39067/68‑1 (MQ=255) gacgCAGCTGCTGACCCGGCATGATGAAGGTGCGGCCAACATAACGGTTTTTAACGAAGCCCTGGCgg < 1:2018453/68‑1 (MQ=255) gacgCAGCTGCTGACCCGGCATGATGAAGGTGCGGCCAACATAACGGTTTTTAACGAAGCCCTGGCgg < 1:1629795/68‑1 (MQ=255) gacgCAGCTGCTGACCCGGCATGATGAAGGTGCGGCCAACATAACGGTTTTTAACGAAGCCCTGGCgg < 1:1568739/68‑1 (MQ=255) gacgCAGCTGCTGACCCGGCATGATGAAGGTGCGGCCAACATAACGGTTTTTAACGAAGCCCTGGCgg < 1:1158219/68‑1 (MQ=255) gacgCAGCTGCTGACCCGGCATGATGAAGGTGCGGCCAACATAACGGTTTTTAACGAAGCCCTGGCgg < 1:3113635/68‑1 (MQ=255) gacgCAGCTGCTGACCCGGCATGATGAAGGTGCGGCCAACATAACGGTTTTTAACGAAGCCCTGGCgg < 1:758319/68‑1 (MQ=255) gacgCAGCTGCTGACCCGGCATGATGAAGGTGCGGCCAACATAACGGTTTTTAACGAAGCCCTGGCgg < 1:2879268/68‑1 (MQ=255) | TTTATCGCGGAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGTTTTTAACGAAGCCCTGGCGG > minE/1514408‑1514528 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |