| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 190,333 | C→T | 29.4% | F610F (TTC→TTT) | ldcC → | lysine decarboxylase 2, constitutive |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 190,333 | 0 | C | T | 29.4% | 90.3 / 37.8 | 88 | F610F (TTC→TTT) | ldcC | lysine decarboxylase 2, constitutive |
| Reads supporting (aligned to +/- strand): ref base C (24/38); new base T (11/15); total (35/53) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.14e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.05e-01 | |||||||||||
GATCTGGCACAAGGGATCCATAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTGCCGGAGATGATCATGACGCCACATCAGGCATGGCAACGACAAATTAAAGGCGA > minE/190265‑190395 | gATCTGGCACAAGGGATCCATAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTc > 1:814995/1‑69 (MQ=255)gATCTGGCACAAGGGATCCATAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTc > 1:2072335/1‑69 (MQ=255)gATCTGGCACAAGGGATCCATAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTc > 1:259993/1‑69 (MQ=255)gATCTGGCACAAGGGATCCATAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTc > 1:2230185/1‑69 (MQ=255)gATCTGGCACAAGGGATCCATAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTc > 1:1463675/1‑69 (MQ=255)gATCTGGCACAAGGGATCCATAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTc > 1:221428/1‑69 (MQ=255) aGGGATCCATAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGTGCATTCGATACTTTg > 1:2126879/1‑67 (MQ=255) aGGGATCCATAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTTGATACCTTg > 1:2551869/1‑67 (MQ=255) aGGGATCCATAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTTGATACCTTGc > 1:3224189/1‑68 (MQ=255) aGGGATCCATAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTTGATACCTTGc > 1:3252751/1‑68 (MQ=255) aGGGATCCATAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTTGATACCTTGc > 1:3256457/1‑68 (MQ=255) aGGGATCCATAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTTGATACCTTGc > 1:2050275/1‑68 (MQ=255) aGGGATCCATAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTTGATACCTTGc > 1:3327577/1‑68 (MQ=255) aGGGATCCATAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTTGATACCTTGc > 1:1345909/1‑68 (MQ=255) aGGGATCCATAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTTGATACCTTGc > 1:361344/1‑68 (MQ=255) aGGGATCCATAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTTGATACCTTGc > 1:427008/1‑68 (MQ=255) aGGGATCCATAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTTGATACCTTGc > 1:871400/1‑68 (MQ=255) aGGGATCCATAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTTGATACCTTGc > 1:2385303/1‑68 (MQ=255) aGGGATCCATAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATACttt > 1:1964521/1‑66 (MQ=255) aGGGATCCATAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATACttt > 1:1083370/1‑66 (MQ=255) aGGGATCCATAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATACttt > 1:3300157/1‑66 (MQ=255) aGGGATCCATAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATACttt > 1:1566007/1‑66 (MQ=255) aGGGATCCATAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTGc > 1:358748/1‑68 (MQ=255) aGGGATCCATAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTGc > 1:3077163/1‑68 (MQ=255) gATCCATAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTGCCGga < 1:3213798/69‑1 (MQ=255) gATCCATAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTGCCGga < 1:1183492/69‑1 (MQ=255) gATCCATAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTGCCGga < 1:1721144/69‑1 (MQ=255) gATCCATAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTGCCGga < 1:2764662/69‑1 (MQ=255) gATCCATAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTGCCGga < 1:1466701/69‑1 (MQ=255) gATCCATAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTGCCGga < 1:2648060/69‑1 (MQ=255) gATCCATAAGCTGATTAGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTGCCGga < 1:3392853/69‑1 (MQ=255) cATAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTGCCGGAgatg < 1:3151741/69‑1 (MQ=255) cATAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTGCCGGAgatg < 1:287008/69‑1 (MQ=255) cATAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTGCCGGAgatg < 1:1774908/69‑1 (MQ=255) cATAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTGCCGGAgatg < 1:3280815/69‑1 (MQ=255) cATAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTGCCGGAgatg < 1:2109052/69‑1 (MQ=255) cATAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTGCCGGAgatg < 1:2205485/69‑1 (MQ=255) cATAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCCGGCATTCGATACTTTGCCGGAgatg < 1:1596681/69‑1 (MQ=255) tAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTg > 1:1679869/1‑58 (MQ=255) tAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTGCCGGAgatgat > 1:2986964/1‑69 (MQ=255) tAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTGCCGGAgatgat > 1:1126711/1‑69 (MQ=255) tAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTGCCGGAgatgat > 1:1492744/1‑69 (MQ=255) tAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTGCCGGAgatgat > 1:1769187/1‑69 (MQ=255) aGCTGATTCGTAATCACGATCTTCCCGGTTTGATGTTGCGGGCTTTCGATACTTTGCCGGAgatgat < 1:1168906/67‑1 (MQ=255) aGCTGATTCGTAAACACGATCTTCGCGGTTTGATGTTGCGGGCATTCGATACTTTGCCGGAgatgat < 1:46093/67‑1 (MQ=255) aGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTGCCGGAgatgat < 1:3124227/67‑1 (MQ=255) aGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTGCCGGAgatgat < 1:67880/67‑1 (MQ=255) aGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTGCCGGAgatgat < 1:1513544/67‑1 (MQ=255) aGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTGCCGGAgatgat < 1:3102525/67‑1 (MQ=255) aGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTGCCGGAgatgat < 1:3082351/67‑1 (MQ=255) aGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTGCCGGAgatgat < 1:196791/67‑1 (MQ=255) aGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTGCCGGAgatgat < 1:2453749/67‑1 (MQ=255) aGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTGCCGGAgatgat < 1:226324/67‑1 (MQ=255) aGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTGCCGGAgatgat < 1:2252736/67‑1 (MQ=255) cTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTGCCGGAGATGATCAt < 1:2249175/68‑1 (MQ=255) gATTCGTACACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTGACGGAGATGATCATGa < 1:1920177/68‑1 (MQ=255) tCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATAc > 1:439001/1‑45 (MQ=255) tCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATAc > 1:463939/1‑45 (MQ=255) tCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATAc > 1:2504516/1‑45 (MQ=255) tCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATAc > 1:1783034/1‑45 (MQ=255) tCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATAc > 1:1354129/1‑45 (MQ=255) tCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATAc < 1:3054226/45‑1 (MQ=255) tCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATAc > 1:1232830/1‑45 (MQ=255) tCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATAc > 1:3026381/1‑45 (MQ=255) tCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATAc > 1:2212839/1‑45 (MQ=255) tCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATAc > 1:91555/1‑45 (MQ=255) cacGATCTTCCAGGTTTGATGTTGCGGGCATTCGATACTTTGCCGGAGATGATCATGACGCCACATCa < 1:2275371/68‑1 (MQ=255) acGATCTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTGCCGGAGATGATCATGACGCCACATCAgg < 1:1954685/69‑1 (MQ=255) acGATCTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTGCCGGAGATGATCATGACGCCACATCAgg < 1:75803/69‑1 (MQ=255) acGATCTTCCCGGGTTGATGTTGCGGGCATTCGATACTTTGCCGGAGATGATCATGACGCCACATCAgg < 1:2867528/69‑1 (MQ=255) cTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTGCCGGAGATGATCATGACGCca < 1:7757/57‑1 (MQ=255) cTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTGCCGGAGATGATCATGACGCca < 1:887871/57‑1 (MQ=255) cTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTGCCGGAGATGATCATGACGCca < 1:2358881/57‑1 (MQ=255) cTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTGCCGGAGATGATCATGACGCca < 1:2272128/57‑1 (MQ=255) cTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTGCCGGAGATGATCATGACGCca < 1:3048405/57‑1 (MQ=255) cTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTGCCGGAGATGATCATAACGCca < 1:435336/57‑1 (MQ=255) cGGTTTGATGTTTCGGGCATTTGATACCTTGCCGGAGATGATCATGACGCCACATCAGGCATGGCa < 1:297948/66‑1 (MQ=255) cGGTTTGATGTTGCGGGCATTTGATACCTTGCCGGAGATGATCATGACGCCACATCAGGCATGGCa < 1:968826/66‑1 (MQ=255) cGGTTTGATGTTGCGGGCATTTGATACCTTGCCGGAGATGATCATGACGCCACATCAGGCATGGCa < 1:809569/66‑1 (MQ=255) cGGTTTGATGTTGCGGGCATTTGATACCTTGCCGGAGATGATCATGACGCCACATCAGGCATGGCa < 1:117706/66‑1 (MQ=255) cGGTTTGATGTTGCGGGCATTTGATACCTTGCCGGAGATGATCATGACGCCACATCAGGCATGGCa < 1:820455/66‑1 (MQ=255) cGGTTTGATGTTGCGGGCATTTGATACCTTGCCGGAGATGATCATGACGCCACATCAGGCATGGCa < 1:1665734/66‑1 (MQ=255) cGGTTTGATGTTGCGGGCATTTGATACCTTGCCGGAGATGATCATGACGCCACATCAGGCATGGCa < 1:921120/66‑1 (MQ=255) cGGTTTGATGTTGCGGGCATTTGATACCTTGCCGGAGATGATCATGACGCCACATCAGGCATGGCa < 1:739361/66‑1 (MQ=255) cGGTTTGATGTTGCGGGCATTTGATACCTTGCCGGAGATGATCATGACGCCACATCAGGCATGGCa < 1:659312/66‑1 (MQ=255) cGGTTTGATGTTGCGGGCATTTGATACCTTGCCGGAGATGATCATGACGCCACATCAGGCATGGCa < 1:1220768/66‑1 (MQ=255) cGGTTTGATGTTGCGGGCATTTGATACCTTGCCGGAGATGATCATGACGCCACATCAGGCATGGCa < 1:1392503/66‑1 (MQ=255) cGGTTTGATGTTGCGGGCATTTGATACCTTGCCGGAGATGATCATGACGCCACATCAGGCATGGCa < 1:3343383/66‑1 (MQ=255) cGGTTTGATGTTGCGGGCATTTGATACCTTGCCGGAGATGATCATGACGCCACATCAGGCATGGCa < 1:1496661/66‑1 (MQ=255) cGGTTTGATGTTGCGGGCATTTGATACCTTGCCGGAGATGATCATGACGCCACATCAGGCATGGCa < 1:3160779/66‑1 (MQ=255) cGGTTTGATGTTGCGGGCATTTGATACCTTGCCGGAGATGATCATGACGCCACATCAGGCATGGCa < 1:2883485/66‑1 (MQ=255) ttGATGTTGCGGGCATTCGATACTTTGCCGGAGATGATCATGACGCCACATCAGGCATGGCAACGACaa > 1:1582035/1‑69 (MQ=255) ttGATGTTGCGGGCATTCGATACTTTGCCGGAGATGATCATGACGCCACATCAGGCATGGCAACGACaa > 1:2303209/1‑69 (MQ=255) ggCATTCGATACTTTGCCGGAGATGATCATGACGCCACATCAGGCATGGCAACGACAAATTAAAGGCGa > 1:1998106/1‑69 (MQ=255) | GATCTGGCACAAGGGATCCATAAGCTGATTCGTAAACACGATCTTCCCGGTTTGATGTTGCGGGCATTCGATACTTTGCCGGAGATGATCATGACGCCACATCAGGCATGGCAACGACAAATTAAAGGCGA > minE/190265‑190395 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |