| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 497,197 | C→T | 100% | L96L (CTG→CTA) | galT ← | galactose‑1‑phosphate uridylyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 497,197 | 0 | C | T | 76.3% | 21.0 / 2.9 | 21 | L96L (CTG→CTA) | galT | galactose‑1‑phosphate uridylyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (5/0); new base T (0/16); total (5/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.91e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
TGATCCGGTGAAAAGCAGATCACCCGGCTGGTGCCGCGCGCGCTCTGGCAACGCATCAGCGGATCGTGACTTTCTGGCGCATCTGGCGTGTCAGACATCAA > minE/497141‑497241 | tgATCCGGTGAAAAGCAGATCACCCGGCTGGTGCCGCGCGCGCTCTGGCAACGCATCAGCGGATCGTGa > 1:1120190/1‑69 (MQ=255)tgATCCGGTGAAAAGCAGATCACCCGGCTGGTGCCGCGCGCGCTCTGGCAACGCATCAGCGGATCGTGa > 1:3060973/1‑69 (MQ=255)tgATCCGGTGAAAAGCAGATCACCCGGCTGGTGCCGCGCGCGCTCTGGCAACGCATCAGCGGATCGTGa > 1:2838548/1‑69 (MQ=255)tgATCCGGTGAAAAGCAGATCACCCGGCTGGTGCCGCGCGCGCTCTGGCAACGCATCAGCGGATCGTGa > 1:2842387/1‑69 (MQ=255) cAGATCACCCGGCTGGTGCCGCGCGCGCTCTGGCAACGCATCAGCGGATCGTGACTTTCTGGCGCATCt > 1:1848135/1‑69 (MQ=255) accGCGCGCGCTCTGGCAACGCATTAGCGGATCGTTGCTTTCTGGCGCATCTGGCGTGTCAGACATCaa < 1:980653/68‑1 (MQ=255) accGCGCGCGCTCTGGCAACGCATTAGCGGATCGTTGCTTTCTGGCGCATCTGGCGTGTCAGACATCaa < 1:880239/68‑1 (MQ=255) accGCGCGCGCTCTGGCAACGCATTAGCGGATCGTTGCTTTCTGGCGCATCTGGCGTGTCAGACATCaa < 1:419234/68‑1 (MQ=255) accGCGCGCGCTCTGGCAACGCATTAGCGGATCGTTGCTTTCTGGCGCATCTGGCGTGTCAGACATCaa < 1:383390/68‑1 (MQ=255) accGCGCGCGCTCTGGCAACGCATTAGCGGATCGTTGCTTTCTGGCGCATCTGGCGTGTCAGACATCaa < 1:3357383/68‑1 (MQ=255) accGCGCGCGCTCTGGCAACGCATTAGCGGATCGTTGCTTTCTGGCGCATCTGGCGTGTCAGACATCaa < 1:3087093/68‑1 (MQ=255) accGCGCGCGCTCTGGCAACGCATTAGCGGATCGTTGCTTTCTGGCGCATCTGGCGTGTCAGACATCaa < 1:2992331/68‑1 (MQ=255) accGCGCGCGCTCTGGCAACGCATTAGCGGATCGTTGCTTTCTGGCGCATCTGGCGTGTCAGACATCaa < 1:2540377/68‑1 (MQ=255) accGCGCGCGCTCTGGCAACGCATTAGCGGATCGTTGCTTTCTGGCGCATCTGGCGTGTCAGACATCaa < 1:2211808/68‑1 (MQ=255) accGCGCGCGCTCTGGCAACGCATTAGCGGATCGTTGCTTTCTGGCGCATCTGGCGTGTCAGACATCaa < 1:1822525/68‑1 (MQ=255) accGCGCGCGCTCTGGCAACGCATTAGCGGATCGTTGCTTTCTGGCGCATCTGGCGTGTCAGACATCaa < 1:1772464/68‑1 (MQ=255) accGCGCGCGCTCTGGCAACGCATTAGCGGATCGTTGCTTTCTGGCGCATCTGGCGTGTCAGACATCaa < 1:1748420/68‑1 (MQ=255) accGCGCGCGCTCTGGCAACGCATTAGCGGATCGTTGCTTTCTGGCGCATCTGGCGTGTCAGACATCaa < 1:167834/68‑1 (MQ=255) accGCGCGCGCTCTGGCAACGCATTAGCGGATCGTTGCTTTCTGGCGCATCTGGCGTGTCAGACATCaa < 1:1478825/68‑1 (MQ=255) accGCGCGCGCTCTGGCAACGCATTAGCGGATCGTG‑CTTTCTGGCGCATCTGGCGTGTCAGACATCaa < 1:2435946/67‑1 (MQ=255) gcTATGGCAACGCATTAGCGGATCGTTGCTTTCTGGCGCATCTGGCGTGTCAGACATCaa < 1:376855/60‑1 (MQ=255) | TGATCCGGTGAAAAGCAGATCACCCGGCTGGTGCCGCGCGCGCTCTGGCAACGCATCAGCGGATCGTGACTTTCTGGCGCATCTGGCGTGTCAGACATCAA > minE/497141‑497241 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |