| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 503,377 | C→T | 40.2% | D123D (GAC→GAT) | modC → | molybdate transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 503,377 | 0 | C | T | 40.2% | 26.6 / 40.7 | 62 | D123D (GAC→GAT) | modC | molybdate transporter subunit |
| Reads supporting (aligned to +/- strand): ref base C (30/7); new base T (20/5); total (50/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGTCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCGTTTACCAGGCAGCCTGTCCGGAGGCGAAAAACAGCGCGTGGCGATTGGTCGGGCTTTGCTGACAGC > minE/503310‑503445 | tGTCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGAcc > 1:960578/1‑69 (MQ=255)tGTCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGAcc > 1:1730368/1‑69 (MQ=255)tGTCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGAcc > 1:1480831/1‑69 (MQ=255) tCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCg > 1:3089367/1‑68 (MQ=255) tCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCg > 1:2890937/1‑68 (MQ=255) tCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCg > 1:3357491/1‑68 (MQ=255) tCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCg > 1:2688468/1‑68 (MQ=255) tCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCg > 1:2659078/1‑68 (MQ=255) tCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCg > 1:1013049/1‑68 (MQ=255) tCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCg > 1:351790/1‑68 (MQ=255) tCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCg > 1:398647/1‑68 (MQ=255) tCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCg > 1:3179181/1‑68 (MQ=255) tCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCg > 1:2110851/1‑68 (MQ=255) tCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCg > 1:403689/1‑68 (MQ=255) tCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCg > 1:556696/1‑68 (MQ=255) tCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCg > 1:1894357/1‑68 (MQ=255) tCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCg > 1:1803388/1‑68 (MQ=255) tCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCg > 1:2033319/1‑68 (MQ=255) tCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCg > 1:778866/1‑68 (MQ=255) tCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCg > 1:1797770/1‑68 (MQ=255) tCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCg > 1:1350225/1‑68 (MQ=255) tCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCg > 1:657882/1‑68 (MQ=255) gTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACGGTTTACCAGGCAGc > 1:1608448/1‑69 (MQ=255) gTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCGTTTACCAGGCAg < 1:1407640/68‑1 (MQ=255) gTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCGTTTACCAGGCAg < 1:1589267/68‑1 (MQ=255) cAGTTCGATAAGCTGGTGGCGCTTTTAGGTATTGAACCGTTGCTTGATCGTTTACCAGGCAGCCTGTc > 1:2235254/1‑68 (MQ=255) cAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGATCGTTTACCAGGCAGCCTg > 1:1687571/1‑66 (MQ=255) cAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGATCGTTTACCAGGCAGCCTGTc > 1:3295457/1‑68 (MQ=255) cAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGATCGTTTACCAGGCAGCCTGTc > 1:3176598/1‑68 (MQ=255) cAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGATCGTTTACCAGGCAGCCTGTc > 1:3286337/1‑68 (MQ=255) cAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGATCGTTTACCAGGCAGCCTGTc > 1:1154109/1‑68 (MQ=255) cAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGATCGTTTACCAGGCAGCCTGTc > 1:91326/1‑68 (MQ=255) cAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGATCGTTTACCAGGCAGCCTGTc > 1:3353645/1‑68 (MQ=255) cAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGATCGTTTACCAGGCAGCCTGTc > 1:887635/1‑68 (MQ=255) cAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGATCGTTTACCAGGCAGCCTGTc > 1:1022398/1‑68 (MQ=255) cAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGATCGTTTACCAGGCAGCCTGTc > 1:341047/1‑68 (MQ=255) cAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGATCGTTTACCAGGCAGCCTGTc > 1:808043/1‑68 (MQ=255) cAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGATCGTTTACCAGGCAGCCTGTc > 1:3412462/1‑68 (MQ=255) cAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGATCGTTTACCAGGCAGCCTGTc > 1:3416448/1‑68 (MQ=255) cAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGATCGTTTACCAGGCAGCCTGTc > 1:2422189/1‑68 (MQ=255) cAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGATCGTTTACCAGGCAGCCTGTc > 1:2228065/1‑68 (MQ=255) cAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGATCGTTTACCAGGCAGCCTGTc > 1:1576391/1‑68 (MQ=255) cAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGATCGTTTACCAGGCAGCCTGTc > 1:1947547/1‑68 (MQ=255) cAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGATCGTTTACCAGGCAGCCTGTc > 1:1672224/1‑68 (MQ=255) cAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCGTTTACCAGGCAGCCTGt > 1:2740620/1‑67 (MQ=255) cAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTAAACCGTTGCTTGATCGTTTACCAGGCAGCCTGTc > 1:2538125/1‑68 (MQ=255) cTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCGTTTACCAGGCAGCCTGTCCGGAGGCGaaaa < 1:260573/68‑1 (MQ=255) tttAGGCATTGAACCGTTGCTTGACCGTTTACCAGGCAGCCTGTCCGGAGGCGAAAAACAGCGCGTGGc < 1:2735593/69‑1 (MQ=255) tAGGCATTGAACCGTTGCTTGACCGTTTACCAGGCAGCCTGTCCGGAGGCGAAAAACAGCGCGTGGc < 1:2036277/67‑1 (MQ=255) gAACCGTTGCTTGACCGTTTACCAGGCAGCCTGTCCGGAGGCGAAAAACAGCGCGTGGCGa > 1:3159544/1‑61 (MQ=255) gAACCGTTGCTTGACCGTTTACCAGGCAGCCTGTCCGGAGGCGAAAAACAGCGCGTGGCGATTGGTCgg > 1:424841/1‑69 (MQ=255) gAACCGTTGCTTGACCGTTTACCAGGCAGCCTGTCCGGAGGCGAAAAACAGCGCGTGGCGATTGGTCgg > 1:1021312/1‑69 (MQ=255) gAACCGTTGCTTGACCGTTTACCAGGCAGCCTGTCCGGAGGCGAAAAACAGCGCGTGGCGATTGGTCgg > 1:1261038/1‑69 (MQ=255) gAACCGTTGCTTGACCGTTTACCAGGCAGCCTGTCCGGAGGCGAAAAACAGCGCGTGGCGATTGGTCgg > 1:2029489/1‑69 (MQ=255) gAACCGTTGCTTGACCGTTTACCAGGCAGCCTGTCCGGAGGCGAAAAACAGCGCGTGGCGATTGGTCgg > 1:2178564/1‑69 (MQ=255) gAACCGTTGCTTGACCGTTTACCAGGCAGCCTGTCCGGAGGCGAAAAACAGCGCGTGGCGATTGGTCgg > 1:2538058/1‑69 (MQ=255) gAACCGTTGCATAACCGTTTACCAGGCAGCCTGTCCGGAGGCGAAAAACAGCGCGTGGCGATTGGTCgg > 1:876026/1‑69 (MQ=255) gTTGCTTGACCGTTTACCAGGCAGCCTGTCCGGAGGCGAAAAACAGCGCGTGGCGATTGGTCGGGCttt > 1:1292704/1‑69 (MQ=255) tGATCGTTTACCAGGCAGCCTGTCCGGAGGCGAAAAACAGCGCGTGGCGATTGGTCGGGCTTTGCTGAc < 1:2614489/69‑1 (MQ=255) tGATCGTTTACCAGGCAGCCTGTCCGGAGGCGAAAAACAGCGCGTGGCGATTGGTCGGGCTTTGCTGAc < 1:76776/69‑1 (MQ=255) tGATCGTTTACCAGGCAGCCTGTCCGGAGGCGAAAAACAGCGCGTGGCGATTGGTCGGGCTTTGCTGAc < 1:1346596/69‑1 (MQ=255) tGATCGTTTACCAGGCAGCCTGTCCGGAGGCGAAAAACAGCGCGTGGCGATTGGTCGGGCTTTGCTGAc < 1:1178163/69‑1 (MQ=255) tGATCGTTTACCAGGCAGCCTGTCCGGAGGCGAAAAACAGCGCGTGGCGATTGGTCGGGCTTTGCTGAc < 1:2752769/69‑1 (MQ=255) tGACCGTTTACCAGGCAGCCTGTCCGGAGGCGAAAAACAGCGCGTGGCGATTGGTCGGGCTTTGCTGAc < 1:2693024/69‑1 (MQ=255) tGACCGTTTACCAGGAAGCCTGTCCGGAGGCGATAAACAGCGCGTGGCGATTGGTCGGGCTTTGCTGAc < 1:1452780/69‑1 (MQ=255) ccGTTTACCAGGCAGCCTGTCCGGAGGCGAAAAACAGCGCGTGGCGATT‑GTCGGGCTTTGCTGACAGc < 1:2133763/68‑1 (MQ=255) | TGTCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCGTTTACCAGGCAGCCTGTCCGGAGGCGAAAAACAGCGCGTGGCGATTGGTCGGGCTTTGCTGACAGC > minE/503310‑503445 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |