| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 1706121 = | 82 (1.290) | 9 (0.160) | 4/88 | NT | 12.2% | coding (162/495 nt) | yphA | predicted inner membrane protein |
| ? | minE | 1706138 = | 57 (1.020) | coding (179/495 nt) | yphA | predicted inner membrane protein | |||||
GGCATTGGCGCGCCCAACGAGGCCATATATTGGACCGTACCGTCAAAGCCCATCATTTTGGGAAAACC‑AAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/1706192‑1706121‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cc‑aaaaTGATGGGCTTTGACGGTACGGTCCAATATATGGCCTCGTTGGGCGCGCCAATGCCGATGCTGGCAGCGAT > minE/1706138‑1706207 GGCATTGGCGCGCCCAACGAGGCCATATATTGGACCGTACCGTCAAAGCCCATCATTTTGGGAAAACC‑AA > 1:730378/1‑70 ATCATTTTGGGAAAACC‑AAAATGATGGGCTTTGACGGTACGGTCCAATATATGGCCTCGTTGGGCGCGCC > 1:3355318/1‑70 CATTTTGGGAAAACCAAAAATAATGGGCTTTGACGGTACGGT > 1:1584261/1‑42 CATTTTGGGAAAACCAAAAATAATGGGCTTTGACGGTACGGT > 1:2175697/1‑42 CATTTTGGGAAAACCAAAAATAATGGGCTTTGACGGTACGGT > 1:2704557/1‑42 TTTTGGGAAAACC‑AAAATGATGGGCTTTGACGGTACGGTCCAATA < 1:1825584/45‑1 TTTTGGGAAAACC‑AAAATGATGGGCTTTGACGGTACGGTCCAATA < 1:3665918/45‑1 TTGGGAAAACC‑AAAATGATGGGCTTTGACGGTACGGTCCAATATA > 1:1596984/1‑45 TTGGGAAAACC‑AAAATGATGGGCTTTGACGGTACGGTCCAATATA > 1:4051779/1‑45 TTGGGAAAACC‑AAAATGATGGGCTTTGACGGTACGGTCCAATATA > 1:4112885/1‑45 CC‑AAAATGATGGGCTTTGACGGTACGGTCCAATAT < 1:2746020/35‑1 AAATGATGGGCTTTGACGGTACGGTCCAATATATGGCCTCGTTGGGCGCGCCAATGCCGATGCTGGCAGC > 1:694380/1‑70 AAATGATGGGCTTTGACGGTACGGTCCAATATATGGCCTCGTTGGGCGCGCCAATGCCGATGCTGGCAG > 1:1508168/1‑69 AATGATGGGCTTTGACGGTACGGTCCAATATATGGCCTC < 1:172383/39‑1 ATGATGGGCTTTGACGGTACGGTCCGATATATGGCCTCGTTGGGCGCGCCAATGCCGATGCTGGCAGCGAT > 1:1835579/1‑71 GGCATTGGCGCGCCCAACGAGGCCATATATTGGACCGTACCGTCAAAGCCCATCATTTTGGGAAAACC‑AAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/1706192‑1706121‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cc‑aaaaTGATGGGCTTTGACGGTACGGTCCAATATATGGCCTCGTTGGGCGCGCCAATGCCGATGCTGGCAGCGAT > minE/1706138‑1706207 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |