| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 314453 = | 25 (0.920) | 25 (0.960) +TC |
22/94 | NT | 67.6% | coding (873/888 nt) | eaeH | attaching and effacing protein, pathogenesis factor |
| ? | W3110S.gb | 3932930 = | 0 (0.000) | coding (219/1608 nt) | dppA | dipeptide transporter | |||||
TTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/314521‑314453‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCG > W3110S.gb/3932930‑3932998 ||| TTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT < 1:1283903/70‑1TTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT < 1:239297/70‑1TTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT < 1:2379817/70‑1TTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT < 1:18772/70‑1TTGTCATCTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT > 1:2571351/1‑70 TGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC < 1:1641296/70‑1 GTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑A < 1:699435/70‑1 GTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑A < 1:827783/70‑1 TCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑A < 1:2310584/69‑1 ATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑Aagt > 1:2148002/1‑67 ATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑Aag < 1:2481893/69‑3 TGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAAGTGAT < 1:713570/70‑1 TCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT > 1:435067/1‑58 ACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGC < 1:1382997/70‑1 ACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATACCGGGCC > 1:1044913/1‑71 CTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑A < 1:2043856/56‑1 CTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑A < 1:2599672/56‑1 CTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑A < 1:924410/56‑1 TCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCC > 1:1659752/1‑62 CTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT > 1:2205508/1‑52 CTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT > 1:1233335/1‑52 GACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCT > 1:828730/1‑70 ACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGA < 1:163579/71‑1 GAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGT < 1:2637380/71‑1 GTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGAT < 1:2159411/42‑1 TTTACTCACTTAGCCGCGTGTCCACTATTGCTGTGTAAGATC‑A < 1:2362568/43‑1 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑Aa > 1:650773/1‑41 CTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGT < 1:1928488/71‑1 CTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑A < 1:1868258/35‑1 CTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑A < 1:554115/35‑1 CTTAGCCGCGTGTCCACTATTGCTGGGTAAGATC‑A < 1:602809/35‑1 AGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCG < 1:2566471/69‑1 AGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCG > 1:1570673/1‑69 AGCCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCG < 1:461818/69‑1 GCCGCGTGTACACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCG > 1:1317545/1‑68 CCGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAA < 1:2346482/51‑1 CGCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGAC < 1:2302478/71‑1 GCGTGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTC > 1:941293/1‑43 TGTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGG < 1:1963244/36‑1 GTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTA > 1:2101118/1‑70 GTCCACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGA < 1:903847/65‑1 CACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAA > 1:729613/1‑43 ACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACC < 1:1467415/71‑1 ACTATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAA < 1:2323723/43‑1 TATTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAA < 1:1570577/40‑1 TTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTA < 1:486535/69‑1 TTGCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAA < 1:1933345/37‑1 GCTGGGTAAGATC‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAA > 1:112272/1‑53 C‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCG > 1:2258212/1‑70 ||| TTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/314521‑314453‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCG > W3110S.gb/3932930‑3932998 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |