| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 70061 = | 22 (1.160) | 29 (1.950) +CGCGTACAACT |
11/80 | NT | 65.0% | intergenic (‑13/‑326) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 236044 = | 18 (0.950) | intergenic (‑42/‑23) | rnhA/dnaQ | ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit | |||||
CGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTT‑TTTTTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/70123‑70061‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAA > W3110S.gb/236044‑236108 ||||||||||| CGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTT‑TTTTTGGACGCGTACA < 1:1241355/71‑1 GGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTT‑TTTTTGGACGCGTACA < 1:991015/70‑1 CCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTT‑TTTTTGGACGCGTACAACTC > 1:1164678/1‑70 CCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTT‑TTTTTGGACGCGTACAACTC > 1:1189903/1‑70 GACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTT‑TTTTTGGACGCGTACAACTCAA > 1:1585350/1‑65 ACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTT‑TTTTTGGACGCGTACAACTCAAGTCTGA > 1:625787/1‑70 CTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTT‑TTTTTGGACGCGTACAACTCAAGTCTGACATA < 1:190024/71‑1 CTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTT‑TTTTTGGACGCGTACAACTCAAGTCTGACATA < 1:1835548/71‑1 TTTTTATCGCAACACTCTACTGTTTCTCCATACCCGTT‑TTTTTGGACGCGTACAACTCAAGTCTGACATA < 1:207576/70‑1 TTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTT‑TTTTTGGACGCGTACAACTCAAGTCTGACATAAA > 1:447288/1‑71 GCAACTCTCTACTGTTTCTCCATACCCGTT‑TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC < 1:425113/71‑1 GCAACTCTCTACTGTTTCTCCATACCCGTT‑TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGC < 1:837292/71‑1 AACTCTCTACTGTTTCTCCATACCCGTTATTTTTGGACGCGTACAACTCAAGTATGACATAAATGACCGCT < 1:457171/71‑1 AACTCTCTACTGTTTCTCCATACCCGTT‑TTTTTGGACGCGTACAACTC < 1:1610440/48‑1 AACTCTCTACTGTTTCTCCATACCCGTT‑TTTTTGGACGCGTACAACTC < 1:1444741/48‑1 CTCTCTACTGTTTCTCCATACCCGTT‑TTTTTGGACGCGTACAACTCAAGTCTGACATA < 1:666675/58‑1 CTCTCTACTGTTTCTCCATACCCGTT‑TTTTTGGACGCGTACAACTCAAGTCTG < 1:954438/53‑1 CTCTCTACTGTTTCTCCATACCCGTT‑TTTTTGGACGCGTACAACTCAAGTCTG < 1:390318/53‑1 CTCTCTAATGTTTCTCCATACCCGTT‑TTTTTGGACGCGTACAACTCAAGTCTGACATA < 1:102066/58‑1 TACTGTTTCTCCATACCCGTT‑TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG < 1:983355/68‑1 TACTGTTTCTCCATACCCGTT‑TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG < 1:1632723/68‑1 TACTGTTTCTCCATACCCGTT‑TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG < 1:638833/68‑1 TACTGTTTCTCCATACCCGTT‑TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG < 1:938838/68‑1 GTTTCTCCATACCCGTT‑TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC > 1:1339804/1‑70 GTTTCTCCATACCCGTT‑TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGC > 1:297823/1‑70 GTTTCTCCATACCCGTT‑TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAG < 1:608828/64‑1 GTTTCTCCATACCCGTT‑TTTTTGGACGCGTACAACTCAAGTCTGACATAAA > 1:1189044/1‑51 GTTTCTCCATACCCGTT‑TTTTTGGACGCGTACAACTCAAGTCTGACATAAA > 1:590712/1‑51 GTTTCTCCATACCCGTT‑TTTTTGGACGCGTACAACTCAAGTCTGACATAAA > 1:386187/1‑51 GTTTCTACATACCCGTT‑TTTTTGGACGCGTACAACTCAAGTCTGACATAAA > 1:808543/1‑51 TCTCCATACCCGTT‑TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCA > 1:880497/1‑63 TACCCGTT‑TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCT < 1:1089809/50‑1 CCCGTT‑TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC > 1:458125/1‑69 CCCGTT‑TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC > 1:1788320/1‑69 CCCGTT‑TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGC > 1:789049/1‑69 TTTTTGGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGT > 1:1405192/1‑71 GGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTC < 1:1246423/70‑1 GGACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTC < 1:875533/70‑1 GACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGc < 1:834684/71‑2 ACGCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGct < 1:1302704/71‑3 GCGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTTGCTAC > 1:442343/1‑71 CGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCA > 1:1118186/1‑39 CGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCA > 1:1181395/1‑39 CGTACAACTCAAGTCTGACATAAATGACCGCTATGAGCA > 1:1185799/1‑39 TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCG > 1:657119/1‑70 TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCG > 1:1753381/1‑70 TACAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCG > 1:373268/1‑70 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGca < 1:1699646/70‑3 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGca < 1:1228524/70‑3 CAACTCAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGCTACCGca < 1:463176/70‑3 ||||||||||| CGGATCCTACCTGACGCTTTTTATCGCAACTCTCTACTGTTTCTCCATACCCGTT‑TTTTTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/70123‑70061‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGTCTGACATAAATGACCGCTATGAGCACTGCAATTACACGCCAGATCGTTCTCGATACCGAA > W3110S.gb/236044‑236108 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |