| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 236798 | 26 (0.680) | 19 (1.100) +TTTAATATCAGTAAACCGGACATAACC |
16/46 | NT | 58.5% | coding (732/732 nt) | dnaQ | DNA polymerase III epsilon subunit |
| ? | W3110S.gb | 4124504 = | 34 (0.890) | intergenic (+106/‑1) | damX/dam | hypothetical protein/DNA adenine methylase | |||||
TTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/236731‑236798‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATGAAGAAAAATCGCGC‑TTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAA > W3110S.gb/4124504‑4124570 ||||||||||||||||||||||||||| TTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTT < 1:1262750/71‑1 GCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATAT < 1:3349307/71‑1 TGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTA < 1:2072650/71‑1 TGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTA < 1:2180779/71‑1 TGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTA < 1:437622/71‑1 TGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTA < 1:1599659/71‑1 TGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGT > 1:495007/1‑70 TGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGT > 1:2477733/1‑70 GAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTA > 1:1884294/1‑61 AAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAA < 1:312590/70‑1 AAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAA < 1:3463015/70‑1 CCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGG < 1:1895116/71‑1 CCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCG > 1:2289723/1‑70 GTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGA > 1:3288127/1‑70 TCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACA < 1:1321000/71‑1 TCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACA < 1:2410741/71‑1 TCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCG < 1:1039208/67‑1 TCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTT < 1:193878/52‑1 CTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACA > 1:2234595/1‑70 TCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACAT > 1:2561986/1‑70 TCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACAT > 1:1544677/1‑70 TCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACAT > 1:2001395/1‑70 TCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACAT > 1:1667073/1‑70 TCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACAT > 1:1765025/1‑70 TCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATC > 1:1966219/1‑56 TCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAAT < 1:17091/53‑1 TCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAA > 1:905601/1‑52 CGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTA > 1:384646/1‑50 GATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACAT < 1:3032314/68‑1 GATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACAT < 1:1254151/68‑1 TCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACC > 1:68313/1‑70 CTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAA > 1:2840742/1‑56 GTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCA < 1:2323180/68‑1 GCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATG > 1:2966223/1‑68 GCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCAT > 1:3240494/1‑67 AGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAA < 1:3233630/71‑1 GAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAA < 1:1121922/71‑1 GAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATA > 1:846783/1‑41 AAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAA < 1:1196367/70‑1 AGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATACCCCATGAAGAAAAA > 1:1284587/1‑71 AGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAA > 1:1022285/1‑71 AGAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAA < 1:2067666/71‑1 GAAAGGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAAT > 1:3511146/1‑71 GGCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCG > 1:1934044/1‑45 GCGGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCA > 1:2706781/1‑55 GGAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGC‑TT > 1:1907413/1‑71 GAAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGA < 1:2874012/43‑1 AAGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGC‑TTTT > 1:3519568/1‑71 AGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGAC > 1:2024484/1‑42 AGTTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGAC > 1:484072/1‑42 GTTGCCTCTGGCGAGCATAA‑TTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGC‑TTTTTTG < 1:202355/71‑1 TTGCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAA < 1:2247813/57‑1 GCCTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGC‑TTTTTTGA < 1:3281864/70‑1 CTCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGC‑TTTTTT < 1:1067801/66‑1 TCTGGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGC‑TTTTTTGAAGTG > 1:3392924/1‑71 GGCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGC‑TTT < 1:3045929/59‑1 GCGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGC‑TTTTTTGAAGTGGG < 1:1485907/69‑1 CGAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGC‑TTTTTTGAAGTGGGCAG > 1:1275481/1‑71 GAGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGC‑TTTTTTG < 1:1917460/60‑1 AGCATAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGCTTTTTTTGAAGTGGGCAGG > 1:1174411/1‑71 TAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGC‑TTTTTTGA < 1:369294/56‑1 TAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGC‑TTTTT < 1:1368082/53‑1 TAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGC‑TTTTT < 1:407799/53‑1 TAATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGC‑TTT < 1:317462/51‑1 AATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAA < 1:1128409/41‑1 ATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGC‑TTTTTTGAAGTGGGCAGGGGGCAAG > 1:2371439/1‑71 ATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGC‑TTTTTTGAAGTGGGCAG > 1:1568665/1‑63 ATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGC‑TTTTTTGAAGTGGGCAG > 1:1120094/1‑63 ATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGC‑TTTTTTGAAGTGGGCAG > 1:3106550/1‑63 ATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGC‑TTTTTTG > 1:2258459/1‑53 ATTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGC‑TTTTTTG > 1:1970506/1‑53 TTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGC‑TTTTTTGAAGTGGGCAGGGGGCAAG > 1:3147903/1‑70 TTTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGC‑TTTTTTGAAGTGGGCA < 1:1020834/61‑1 TTAATATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGC‑TTTTTTGAAGTGG > 1:3444877/1‑57 ATATCAGTAAACCGGACATAACCCATGAAGAAAAATCCCGC‑TTTTTTGAAGTGGGCAGGGGGCAAGTATCC < 1:3440792/71‑1 TATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGC‑TTTTTTGAAGTGGGCAGGGGGCAAGTATC < 1:2697699/69‑1 TATCAGTAAACCGGACATAACCCATGAAGAAAAATCGCGC < 1:2526995/40‑1 AGTAAACCGGACATAACCCATGAAGAAAAATCGCGC‑TTTTTTGAAGTGGGCAGGGGGCAA > 1:2119279/1‑60 AGTAAACCGGACATAACCCATGAAGAAAAATCGCGC‑TTTTTTG < 1:52041/43‑1 AGTAAACCGGACATAACCCATGAAGAAAAATCGCGC‑T > 1:2329135/1‑37 TAAACCGGACATAACCCATGAAGAAAAATCGCGC‑TTTTTTGAAGTGGGCAGGGGGCA < 1:802818/57‑1 TAAACCGGACATAACCCATGAAGAAAAATCGCGC‑TTTTTTGA < 1:1155556/42‑1 AACCGGACATAACCCATGAAGAAAAATCGCGC‑TTTTTTGAAG > 1:64545/1‑42 AACCGGACATAACCCATGAAGAAAAATCGCGC‑TTTTTTGA > 1:2090088/1‑40 AACCGGACATAACCCATGAAGAAAAATCGCGC‑TTTTTTGA > 1:1971864/1‑40 CCGGACATAACCCATGAAGAAAAATCGCGC‑TTTTTTGAAGTGGGCAGGGGGCAAGTATCCCC > 1:384459/1‑62 CGGACATAACCCATGAAGAAAAATCGCGC‑TTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGA < 1:2228623/71‑1 CGGACATAACCCATGAAGAAAAATCGCGC‑TTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGA < 1:2525840/71‑1 GACATAACCCATGAAGAAAAATCGCGC‑TTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGA < 1:914549/69‑1 TAACCCATGAAGAAAAATCGCGC‑TTTTTTGAAGTGGGCAGGGGGCAAGTATCCCC < 1:1330506/55‑1 TAACCCATGAAGAAAAATCGCGC‑TTTTTTGAAGTGGGCAGGGGGCAAGTATC < 1:1551350/52‑1 AACCCATGAAGAAAAATCGCGC‑TTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAA > 1:1457247/1‑71 ACCCATGAAGAAAAATCGCGC‑TTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAA < 1:3589658/70‑1 ACCCATGAAGAAAAATCGCGC‑TTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGA > 1:3446857/1‑63 CCCATGAAGAAAAATCGCGC‑TTTTTTGAAGTGGGCA > 1:1914307/1‑36 ||||||||||||||||||||||||||| TTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/236731‑236798‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CATGAAGAAAAATCGCGC‑TTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAA > W3110S.gb/4124504‑4124570 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |