Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 420,941 T→A 5.3% intergenic (+31/‑45) brnQ → / → proY branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913420,9410TA 5.3% 675.4 / 20.4 189intergenic (+31/‑45)brnQ/proYbranched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease
Reads supporting (aligned to +/- strand):  ref base T (82/97);  new base A (4/6);  total (86/103)
Fisher's exact test for biased strand distribution p-value = 7.58e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.63e-01

Only 100 of 194 total aligned reads displayed.

CGTTTACCGCTGGCCGAACAAGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGGTTCGGCAGAC  >  NC_000913/420794‑421090
                                                                                                                                                   |                                                                                                                                                      
cGTTTACCGCTGGCCGAACAAGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCTCGGGGCTGc                                                                                                                                                      <  2:3117907/150‑1 (MQ=255)
cGTTTACCGCTGGCCGAACAAGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGc                                                                                                                                                      <  2:2170108/150‑1 (MQ=255)
    tACCGCTGGCCGAACAAGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATg                                                                                                                                                  >  1:1294309/1‑150 (MQ=255)
      ccGCTGGCCGAACAAGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGcc                                                                                                                                                <  1:1560910/150‑1 (MQ=255)
         cTGGCCGAACAAGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACAGTTGTTTTAACCACGGGGCTGCGATGCCCCg                                                                                                                                             >  2:237641/1‑150 (MQ=255)
          tGGCCGAACAAGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGt                                                                                                                                            <  2:2993825/150‑1 (MQ=255)
          tGGCCGAACAAGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGt                                                                                                                                            <  2:1001517/150‑1 (MQ=255)
           ggCCGAACAAGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCATCGCAGCCCCGTg                                                                                                                                           <  1:1179932/150‑1 (MQ=255)
           ggCCGAACAAGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCATCGCAGCCCCGTg                                                                                                                                           <  1:1199077/150‑1 (MQ=255)
           ggCCGAACAAGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCATCGCAGCCCCGTg                                                                                                                                           <  1:2102095/150‑1 (MQ=255)
            gCCGAACAAGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTgg                                                                                                                                          >  2:1171539/1‑150 (MQ=255)
            gCCGAACAAGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCATCGCAGCCCCGTgg                                                                                                                                          <  2:1808132/150‑1 (MQ=255)
              cGAACAAGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑tt                                                                                                                                       >  2:721428/1‑150 (MQ=255)
                aaCAAGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑tttt                                                                                                                                     <  1:1257112/150‑1 (MQ=255)
                  cAAGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑tttttt                                                                                                                                   <  2:1572783/150‑1 (MQ=255)
                   aaGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTa                                                                                                                                  >  1:69144/1‑150 (MQ=255)
                        cTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATtgtg                                                                                                                             <  2:2263404/150‑1 (MQ=255)
                              tGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATg                                                                                                                       >  1:58399/1‑150 (MQ=255)
                                gTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATggg                                                                                                                     >  1:1094762/1‑150 (MQ=255)
                                 ttAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGt                                                                                                                    >  2:485446/1‑150 (MQ=255)
                                   aaTGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTa                                                                                                                  >  1:1622187/1‑150 (MQ=255)
                                   aaTGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTa                                                                                                                  >  1:2543683/1‑150 (MQ=255)
                                   aaTGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTa                                                                                                                  >  1:2242091/1‑150 (MQ=255)
                                      gCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGa                                                                                                               >  2:1208769/1‑150 (MQ=255)
                                       ccAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGaa                                                                                                              >  1:1985776/1‑150 (MQ=255)
                                       ccAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGaa                                                                                                              >  1:2130279/1‑150 (MQ=255)
                                             gtggtgATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGACTTGATg                                                                                                        >  1:2770633/1‑150 (MQ=255)
                                               ggtgATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGa                                                                                                      <  1:1921932/150‑1 (MQ=255)
                                                gtgATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATTGaa                                                                                                     <  2:2116358/150‑1 (MQ=255)
                                                gtgATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGaa                                                                                                     <  2:2823144/150‑1 (MQ=255)
                                                gtgATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGaa                                                                                                     <  2:2823235/150‑1 (MQ=255)
                                                gtgATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGaa                                                                                                     <  2:3036304/150‑1 (MQ=255)
                                                   aTGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGt                                                                                                  <  1:419531/150‑1 (MQ=255)
                                                      gtggtTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAg                                                                                               <  1:450969/150‑1 (MQ=255)
                                                       tggtTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGa                                                                                              <  1:916842/150‑1 (MQ=255)
                                                          ttCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACa                                                                                           >  1:1297297/1‑150 (MQ=255)
                                                          ttCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACa                                                                                           >  2:1396734/1‑150 (MQ=255)
                                                           tCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACaa                                                                                          <  2:115014/150‑1 (MQ=255)
                                                            cTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAg                                                                                         <  1:2420053/150‑1 (MQ=255)
                                                             tGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGc                                                                                        >  1:2345941/1‑150 (MQ=255)
                                                              ggCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTGTTTATTGTGTTGATGGGTTAGGACTTGATGGAAAGTAAGAACAAGCt                                                                                       >  1:1583266/1‑150 (MQ=255)
                                                               gCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTa                                                                                      >  1:1706195/1‑150 (MQ=255)
                                                               gCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTa                                                                                      <  1:2193164/150‑1 (MQ=255)
                                                                ccATTATCTGTGATCGCGCGGCAGCTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTTAACATTTGTTTTAACAACGTGGCTGAGATGACCCGTGG‑ATTTTTATTGTGTTTATGGGGTAGGAATTGATGGAAAGTAAGAAAAAGCTaa                                                                                     >  2:1943701/1‑150 (MQ=255)
                                                                ccATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTaa                                                                                     >  1:2899965/1‑150 (MQ=255)
                                                                          ggATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATGTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGCTGGAAAGTAAGAACAAGCTAAAGCGTGGGCt                                                                           >  2:1320075/1‑150 (MQ=255)
                                                                            aTCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTaa                                                                         <  2:2718651/150‑1 (MQ=255)
                                                                                 gcgGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTAcc                                                                    >  2:586664/1‑150 (MQ=255)
                                                                                  cgGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTAccc                                                                   >  1:928856/1‑150 (MQ=255)
                                                                                      aGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCca                                                               <  1:382448/150‑1 (MQ=255)
                                                                                           gtcAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATAc                                                          >  2:2317995/1‑150 (MQ=255)
                                                                                           gtcAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATAc                                                          <  1:1056701/150‑1 (MQ=255)
                                                                                           gtcAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATAc                                                          >  2:605638/1‑150 (MQ=255)
                                                                                           gtcAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATAc                                                          >  1:2272368/1‑150 (MQ=255)
                                                                                             cAGGTGACCTCCATAGATCTATAAATCACTGAACTTTTGTTTTAACCACGGGGCTGCGATGCCCGGTGT‑TTTTTTATTGTGTTGATGGGTTAGGATTTGATGTAAAGTAAGAACAAGCTAAAGCGTGGTCTAAGTACCCGCCACATACGc                                                        <  1:721428/150‑1 (MQ=255)
                                                                                                 tGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTa                                                    <  1:843218/150‑1 (MQ=255)
                                                                                                 tGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTa                                                    <  1:2580327/150‑1 (MQ=255)
                                                                                                 tGACCTCCAGCGCTCACTAAATCACTGAACAGTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTGTTTATTGGGTTGCTGGGTTAGGAAGTGAGGGACAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCtttc                                                    >  2:2224616/1‑149 (MQ=255)
                                                                                                   aCCTCCAGCGCTCACTAACTCACTGAACATTTGTGTTAACCACGGGGCTGCGATGCCCCGTGG‑ATTTTTCTTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTATGTACCCGCCACATACGCTTTATg                                                  <  1:2213206/150‑1 (MQ=255)
                                                                                                   aCCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATg                                                  <  1:1408293/150‑1 (MQ=255)
                                                                                                    ccTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATgg                                                 >  2:1627636/1‑150 (MQ=255)
                                                                                                      tCCAGCGCTCACTAAATCACTGAACATTTGTTTTCACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCa                                               <  2:2875782/150‑1 (MQ=255)
                                                                                                      tCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCGTTATGGCa                                               >  1:477689/1‑150 (MQ=255)
                                                                                                       ccAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCAc                                              <  2:2625463/150‑1 (MQ=255)
                                                                                                       ccAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCAc                                              >  2:553578/1‑150 (MQ=255)
                                                                                                          gcgcTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTgg                                           <  1:2543300/150‑1 (MQ=255)
                                                                                                             cTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGtt                                        >  2:2420451/1‑150 (MQ=255)
                                                                                                              tCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTc                                       >  2:3129270/1‑150 (MQ=255)
                                                                                                               cACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCa                                      <  2:2763050/150‑1 (MQ=255)
                                                                                                               cACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCa                                      <  1:906760/150‑1 (MQ=255)
                                                                                                               cACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCa                                      <  2:2542784/150‑1 (MQ=255)
                                                                                                                aCTAAATCACTGAACCTTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGAGGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTGTATGGCACTGGGTTCAg                                     >  2:731187/1‑150 (MQ=255)
                                                                                                                  tAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGcc                                   >  1:3113107/1‑149 (MQ=255)
                                                                                                                     aTCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAGCAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAAtt                                <  2:2883105/150‑1 (MQ=255)
                                                                                                                     aTCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAAtt                                <  2:2943286/150‑1 (MQ=255)
                                                                                                                      tCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTg                               <  2:2071441/150‑1 (MQ=255)
                                                                                                                      tCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTg                               <  2:2066380/150‑1 (MQ=255)
                                                                                                                         cTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCa                            <  1:1919783/150‑1 (MQ=255)
                                                                                                                         cTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TGTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCAAAAGCGTGGGCTAAGTACCCGCCCCAGACGCGTTATGGCACAGGGTTCAGCACATGGCa                            >  1:2517968/1‑150 (MQ=255)
                                                                                                                           gAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTTATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTTGCAcc                          >  1:2988907/1‑150 (MQ=255)
                                                                                                                           gAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGTTGGGTTTGGAATTGTTGGAAAGTAAGAACAAGCTAAATCGTGGGCGAAGTACCCGCCACAAACCCGGTATGGCACTGGGTTCAGCAAATGGCAcc                          >  1:553206/1‑150 (MQ=255)
                                                                                                                               aattGTTTAAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGGGTTGATGGGATAGGAATTGATGGACAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCACTTGGCACCGGGc                      >  2:2425702/3‑150 (MQ=255)
                                                                                                                                tttGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGTCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCt                     <  2:1647438/150‑1 (MQ=255)
                                                                                                                                tttGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCt                     >  1:1822975/1‑150 (MQ=255)
                                                                                                                                tttGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCt                     >  1:745091/1‑150 (MQ=255)
                                                                                                                                tgtGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCt                     <  2:2214742/148‑1 (MQ=255)
                                                                                                                                 ttGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTTTGTTGTTTGGTTAGGAATTTATGGAAAGTAAGAAAAAGCTAAAACCTGGGCTAAGTAACCCCCACAAAACCGTTATTGCACAGGGTTAAGCAATTGGCACCGGGCTg                    >  1:1479479/1‑150 (MQ=255)
                                                                                                                                      ttAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTa               <  2:907514/150‑1 (MQ=255)
                                                                                                                                       aaaCCACGGGGCATCGCAGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAAATGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTAACCGCCACAAAAGCGTTATGGCACAGGGTTCAGCCATTGGCACCGGGCTGTTTTAc              >  1:2843084/2‑150 (MQ=255)
                                                                                                                                        aaCCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACg             <  2:1544206/150‑1 (MQ=255)
                                                                                                                                        aaCCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACg             <  1:1336451/150‑1 (MQ=255)
                                                                                                                                           cACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTTTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTAACCGCCACAAACGCTTTATGGCACAGGGTTCAGCAAATGGCACCGGGCTGTTTTAAGGtt          >  1:2812088/1‑150 (MQ=255)
                                                                                                                                           cACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATGGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGGtt          >  2:1862602/1‑150 (MQ=255)
                                                                                                                                            aCGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCCCAAACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGGTTc         >  1:2016831/1‑150 (MQ=255)
                                                                                                                                            aCGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCCCCGGGCTGTTTTACGGTTc         >  1:2016835/1‑150 (MQ=255)
                                                                                                                                            aCGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGGTTc         <  2:1083566/150‑1 (MQ=255)
                                                                                                                                                   tGCGATGCCCCGTGGTTTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGGTTCGGCAGa   >  2:437775/1‑150 (MQ=255)
                                                                                                                                                   tGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGGTTCGGCAGAc  >  2:280413/1‑150 (MQ=255)
                                                                                                                                                   tGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGGTTCGGCAGAc  >  2:2351582/1‑150 (MQ=255)
                                                                                                                                                   tGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGGTTCGGCAGAc  <  1:208974/150‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                      
CGTTTACCGCTGGCCGAACAAGGTCTGGCGTGGTTAATGCCAACAGTGGTGATGGTGGTTCTGGCCATTATCTGGGATCGCGCGGCAGGTCGTCAGGTGACCTCCAGCGCTCACTAAATCACTGAACATTTGTTTTAACCACGGGGCTGCGATGCCCCGTGG‑TTTTTTATTGTGTTGATGGGTTAGGAATTGATGGAAAGTAAGAACAAGCTAAAGCGTGGGCTAAGTACCCGCCACATACGCTTTATGGCACTGGGTTCAGCAATTGGCACCGGGCTGTTTTACGGTTCGGCAGAC  >  NC_000913/420794‑421090

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑