Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913915,2130AT24.0% 164.5 / 16.7 107intergenic (‑356/+139)ybjE/aqpZputative transporter/aquaporin Z
Reads supporting (aligned to +/- strand):  ref base A (67/12);  new base T (1/24);  total (69/38)
Fisher's exact test for biased strand distribution p-value = 1.15e-13
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 108 total aligned reads displayed.

TGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCAGGCCTTCTGCGTTAAT  >  NC_000913/915079‑915352
                                                                                                                                      |                                                                                                                                            
tGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGgc                                                                                                                                         <  2:1357403/140‑1 (MQ=32)
tGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGgc                                                                                                                                         <  2:1357552/140‑1 (MQ=32)
    tgtgGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCTGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGgccgcc                                                                                                                                     >  1:1540389/1‑140 (MQ=17)
    tgtgGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCATGGGGCGGCGGCGATTGggcggc                                                                                                                                     >  1:1255044/1‑138 (MQ=12)
    tgtgGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGgccgcc                                                                                                                                     >  1:1257466/1‑140 (MQ=32)
    tgtgGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGgccgcc                                                                                                                                     >  1:783822/1‑140 (MQ=32)
    tgtgGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGgccgcc                                                                                                                                     >  1:649870/1‑140 (MQ=32)
    tgtgGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGgccgcc                                                                                                                                     >  1:648092/1‑140 (MQ=32)
    tgtgGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGAGAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGgccgcc                                                                                                                                     >  1:1257467/1‑140 (MQ=17)
      tgGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGcccc                                                                                                                                   >  1:1356672/1‑140 (MQ=32)
        ggCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGccccca                                                                                                                                 >  1:103635/1‑139 (MQ=17)
         gCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTg                                                                                                                                >  2:1032686/1‑140 (MQ=32)
         gCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTg                                                                                                                                >  2:1032277/1‑140 (MQ=32)
         gCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTg                                                                                                                                >  2:476232/1‑140 (MQ=32)
             aGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTg‑cgcg                                                                                                                           >  1:1557329/1‑140 (MQ=32)
             aGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTg‑cgcg                                                                                                                           >  1:1583272/1‑140 (MQ=32)
             aGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTg‑cgcg                                                                                                                           >  1:743530/1‑140 (MQ=32)
             aGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCAg‑cgcg                                                                                                                           >  1:920578/1‑140 (MQ=17)
             aGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCAg‑cgcg                                                                                                                           >  1:920575/1‑140 (MQ=17)
                   cgTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑CGCGCTCCtt                                                                                                                     >  1:1258202/1‑140 (MQ=32)
                   cgTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCACGGGGGTGCAGGGGGCGGCGGCGATTGGCCGACCCCTT‑CGCGCTccgt                                                                                                                     >  1:1600774/1‑138 (MQ=255)
                        tACTGGGTTGTTACCGCGCGCCCGACCGGGTAGCCTTTTGGTTTACGTCGTGGGCACCGCGCAGCGGCTTTTTTTTTCGCCTGTGCCGGGGGGTGCTGGGGGCGGGGGCTTTGGGCCGCCCCCTG‑CGCGCTCCTTGCGcc                                                                                                                <  2:1388583/140‑1 (MQ=2)
                             gttttttACCTCGCGCCCGACCGGGTTGCTTTACGGGATATGTGGGGGCCACCGCGCCGCGGCTTTTTTGTTGGCCTGAGCCCGGGGGGGCTGGGGGGGGCGGCTTTGGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTgg                                                                                                           <  2:1383764/135‑1 (MQ=2)
                             ggttGTTACCGCGCGCCCGACCGGGTAGCCTTATGGTATAAGTCGAGGGCACCGCGCAGGGGCTATTTTGTCCGCCATCGCCCGGGGGTGCTGGGGGGGGCGGCGATTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTgg                                                                                                           <  2:1383629/137‑1 (MQ=11)
                             ggtggTTCCCTCGGGCCCGCCCGGTTCGCCGTAGGGTTTAAGTGGTGGGCCCCGCGCCGGGGCTTTTTTGTACGCATGCGCCGGGGGGTGGTGGGGGGGGCGGCTTTTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTgg                                                                                                           <  2:1384064/136‑1 (MQ=2)
                             ggATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCAG‑CGCGCTCCTTGCGCCAGTgg                                                                                                           >  2:437469/1‑140 (MQ=18)
                               tttttcccTCGCGCCCCACCGGGTCGCCTTATGGTTAATGGGGGGGCCACCGCCCCGGGGCTTTTTTGTGCGCCAGCGCCCGGGGGTGCGGGGGGCGGGGGCTTTGGGCCCCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCa                                                                                                         <  2:852742/134‑1 (MQ=2)
                               ttGTAACCCCCCGCCCCACCCTGTCGCCGTCTGGTATCCGTCGGGGCCACCGCGCTCGGGCTATTTTGTTCGCCAGCCCCGGGGGGTGGTGGGGGGGGCGGCTTTGGCCCGCCCACTC‑CGCGCTCCTTGCGCCAGTGGCa                                                                                                         <  2:852760/139‑1 (MQ=2)
                               aTGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCa                                                                                                         >  1:939368/1‑140 (MQ=34)
                               aTGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCa                                                                                                         >  1:444836/1‑140 (MQ=34)
                               aTGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCa                                                                                                         >  1:711299/1‑140 (MQ=34)
                                  ttACCTCTCGCCCGACCCGGTCGCCGTAAGGGATACGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCAG‑CGCGCTCCTTGCGCCAGTGGCAata                                                                                                      >  2:656950/1‑140 (MQ=255)
                                  ttACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCATAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCAG‑CGCGCTCCATGCGCCAGTGGCAata                                                                                                      >  1:590625/1‑140 (MQ=255)
                                  ttACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTTGCCGCCCCCAG‑CGCGCTCCATGCGCCAGTGGCAata                                                                                                      >  1:920277/1‑140 (MQ=255)
                                  ttACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAata                                                                                                      >  1:506297/1‑140 (MQ=37)
                                  ttACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAata                                                                                                      >  1:623525/1‑140 (MQ=37)
                                    aCCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATg                                                                                                    >  1:1337538/1‑140 (MQ=39)
                                    aCCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑CGCGCTCCGTGCGCCAGTGGCAATATg                                                                                                    >  1:556852/1‑140 (MQ=255)
                                     ccTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGAGTGGCCGCCCCCGG‑CGCGCTCCTTGCGCCCGTGGCAATATGt                                                                                                   >  1:1287885/1‑140 (MQ=255)
                                     ccTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATGTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGAGTGGCCCCCCCCAG‑CGCGCTCCTTGCGCCAGGGGCAATATGt                                                                                                   >  1:1287554/1‑140 (MQ=14)
                                          cgcCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCtt                                                                                              >  1:804341/1‑140 (MQ=255)
                                          cgcCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCtt                                                                                              >  1:765646/1‑140 (MQ=255)
                                          cgcCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCtt                                                                                              >  2:114039/1‑140 (MQ=255)
                                                    gttcgCCGTATGGTTTAAGTGGAGGGCACCGGGCTGCGGCGATTTTGTTCGCCAGTGCGGGGGGTTGCTGGGGGCGGCGGCGTTTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGaa                                                                                    <  2:1407340/136‑1 (MQ=17)
                                                     gTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGaaa                                                                                   >  2:1288229/1‑140 (MQ=255)
                                                         ccttatgggATATGTGGTGGGCACCGCGATGGGGCGTTTTTGTTCGCAAGTGCCGGGGGGTGAGGGGGGCGGGGGGTTTTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAg                                                                               <  2:466497/134‑1 (MQ=16)
                                                         ccGTATGGGATATGGCGTGGGCACGGCGCCGCGGGTTTTTTGTTCGCCAGCGCCGGGGGGGGCTGGGGGGGGGGGGTTGTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAg                                                                               <  2:466172/140‑1 (MQ=12)
                                                           gTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAgcg                                                                             >  2:441829/1‑140 (MQ=255)
                                                           gTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAgcg                                                                             >  2:854037/1‑140 (MQ=255)
                                                            tAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAgcgc                                                                            >  1:557606/1‑140 (MQ=255)
                                                            tAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAgcgc                                                                            >  1:789982/1‑140 (MQ=255)
                                                                   tAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAACGGAGCGCAACAAga                                                                     >  2:715375/1‑140 (MQ=255)
                                                                   tAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCGG‑CGCGCTCCTTGCGCCAGTGGCAAGATTTTGCTTAGCTCATGAAAGGAGCGCAACAAga                                                                     >  1:452142/1‑140 (MQ=255)
                                                                   tAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCAG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAga                                                                     >  2:717393/1‑140 (MQ=255)
                                                                    aattCGAGGGCACCGCGCAGCGGCGAATTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAgat                                                                    >  2:996392/4‑140 (MQ=255)
                                                                    aaGTCGAGGGCACCGCGCAGCGGCGTTTTTGTTCGCCAGAGCCCGGGGGTGGAGGGGGCGGCGGCGAGTGGCCGCCCCCGG‑CCCGCTCCGTCCGCCAGTGGCAATATGGTGCTTAGCTGCGTAATGGAGCGCAACCAgag                                                                    >  2:516110/1‑139 (MQ=14)
                                                                    aaGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAgat                                                                    >  2:995290/1‑140 (MQ=255)
                                                                           gggCCCGGCGCTGGGGCTATTTTGTTCGCCAGCGCCGGGGGGTGCTGGGGGCGGCGGCGTTTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAAt                                                             <  2:1317963/140‑1 (MQ=18)
                                                                           gggCCCCGCGGCGGGGCTATTTGGTTCGCCTGCGCCGGGGGGTGCCGGGGGGGGGGGCGTTTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAAt                                                             <  2:430999/140‑1 (MQ=18)
                                                                           gggCAGCGCGCCGGGGGGTTTTTGTTCGCCTGAGCCGGGGGGTGCCGGGGGCGGGGGCGTTTGCCCGCCCCGTG‑CGCGCTCCTTGCGCCAGTGGCAATTTGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAAt                                                             <  2:1335778/140‑1 (MQ=18)
                                                                           gggCACCGCGCAGGGGCGATTTTGTTCGCCAGAGCCGGGGGGTGCCGGGGGCGGCGGCGATTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAAt                                                             <  2:1558284/140‑1 (MQ=255)
                                                                           gggCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGTAAGGGGCGCAACAATATGATGAAt                                                             >  1:1569342/1‑140 (MQ=255)
                                                                           gggCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCCGCGAGTGGCCGCCCCCTG‑CGCCCTCCTTGAGCCAGTGGCAATATGTTGCTTTTATCATGAAAGGAGCGCAACAAGATGATGTAt                                                             >  2:778333/1‑140 (MQ=17)
                                                                           gggCACCGCGATGCGGGTTTTTTGTTCGCCTGTGCCGGGGGGTGCTGGGGGGGGGGGATATGGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAAt                                                             <  1:760974/140‑1 (MQ=18)
                                                                           ggccACCGCGCTGGGGCTTTTTTGTTCGCATGAGCCGGGGGGTGCTGGGGGGGGGGGCTTTTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAAt                                                             <  2:1231531/137‑1 (MQ=18)
                                                                              ccccGCGCTGCGGCGTTTTGTTTCGCCAGCGCCGGGGGTTGCTGGGGGCGGGGGCGATGGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCaa                                                          <  2:909340/138‑1 (MQ=18)
                                                                                ccGCGAAGCGGCTTTTTTTTCCGCCTGCGCGGGGGGGTGCGGGGGGGGGGGCTTTTTGGCCCCCCCCAC‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACa                                                        <  1:1402926/140‑1 (MQ=255)
                                                                                 cgcgCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGTGCGGCGGCGATTGGCCGCCCCCAG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACat                                                       >  2:619279/1‑140 (MQ=255)
                                                                                 cgcgCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGTTTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTATCTCATGAAAGGAGCGCAAAAAGATGATGAATGAACat                                                       >  1:1109864/1‑140 (MQ=255)
                                                                                 cgcgCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATTATGAATCAACat                                                       >  1:416975/1‑140 (MQ=255)
                                                                                 cgcgCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACat                                                       >  1:416865/1‑140 (MQ=255)
                                                                                 cgcgCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACat                                                       >  1:705868/1‑140 (MQ=255)
                                                                                 cgcgCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACat                                                       >  1:670935/1‑140 (MQ=255)
                                                                                 cgcgCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACat                                                       >  2:1430489/1‑140 (MQ=255)
                                                                                                         tgagCCGGGGGGTGCGGGGGGCGGGGGCGATTGGCCGCCCCCGG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGcc                               <  2:1465129/139‑1 (MQ=255)
                                                                                                         cgcccgggggggTCCGGGGGGGGGCGGCGTGGGCCCCCCCCCCC‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGcc                               <  1:1106401/133‑1 (MQ=37)
                                                                                                         atcgCCGGGGGGTGCTGGGGGGGGGGGCG‑TTGGCCCCCCCCCGCCGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGcc                               <  2:265227/137‑1 (MQ=37)
                                                                                                          gtgcgggggggTGCTGGGGGCGGCGCCGATTGGCCGCCCCATG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCt                              <  2:769946/134‑1 (MQ=37)
                                                                                                          gcgCCGGGGGTTGCTGGGGGCGGGGGCTTTTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCt                              <  2:446126/138‑1 (MQ=37)
                                                                                                          gcgCCCGGGGGTGCTGGGGGCGGCGGCGTTGGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAACGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCt                              <  2:446268/138‑1 (MQ=37)
                                                                                                          gagCCGGGGGGTGCTGGGGGCGGCGGCTTTTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCt                              <  2:1321152/140‑1 (MQ=255)
                                                                                                          gagCCGGGGGGGGCTGGGGGCGGCGGCGTTGGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCt                              <  2:119193/140‑1 (MQ=37)
                                                                                                          cagCCCGGGGGTGCCGGGGCCGGCTGCTCTCGCCCGCCCCCTC‑CGCGCTCCTTGCGCCAGATGCAATATGTTGCTTACCACATGAAAGGAGCGCAACAAGATGATGAATCAACCAATAACAACATCTTAAAAAAAGGcgt                              <  2:1371918/139‑3 (MQ=255)
                                                                                                           agCCCGGGGGTGCAGGGGGCGGCGGCGATTTGCCGCCCCCTG‑CGCGCGCCTTGCGCCAGTGGCAAAATTTTGCTTAGCACAAGAAAGTATCGCAACAAGATGATGAAACAAAATATAACAACATCTTAAAAAAATGCCTg                             >  1:1614452/1‑140 (MQ=21)
                                                                                                              ggggggtTGCGGGGGGGGGCGGCTTTGGCCCCCCCCCGG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACa                          <  1:965327/138‑1 (MQ=37)
                                                                                                              cgggggggGCTGGGGGCGGCGGCGATTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACa                          <  2:549536/138‑1 (MQ=255)
                                                                                                              cggggggTGGTGGGGGGGGCGGCGATTGCCCCCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACa                          <  2:103635/138‑1 (MQ=37)
                                                                                                               cGGGGGTGCGGGGGGCGGGGGCGTGGGCCCGCCCCCTG‑CGCGCTCCTTGCGCCAGAGGCAATATGTTGCTTAGCTCATGAACGGAGCGCAACAAGATGATGAATCAACCTATAACACCTTCTTAAAAAAAGGCCTGACAt                         <  2:599990/140‑1 (MQ=37)
                                                                                                                  ggtggctggggggggggGCGTTGGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTAc                      <  2:416975/133‑1 (MQ=38)
                                                                                                                  gggTGCGGGGGGGGGGGGCGTTTGGCCCCCCCCTC‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTAc                      <  2:416865/140‑1 (MQ=38)
                                                                                                                  gggTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAATAAAAGGCCTGACATTAc                      >  2:548603/1‑140 (MQ=255)
                                                                                                                       cAGTGGTCGGCGGGGGGTGGCCGCCCCCTG‑AGCGCTCCTTGCGCCAGTGGCACTATGTTGCTTATCTCATGATATGAGCGCAACAAGAAGAGGGATCAACAGGTAACAACATCTGAATAAAGGGCCTGTCAttgagcggg                 >  2:356466/1‑133 (MQ=255)
                                                                                                                       cAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGTATCAACAAATAACAACATCTTAAAAAAATGCCTGACATTACGCCAg                 >  1:1509793/1‑140 (MQ=255)
                                                                                                                       cAGGGGGCGGCGGCGATTGGCCGCCCCCAG‑CGCGCTCCTTGCGCCAGTGGCAAAATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATAAACATATAACAACAACTTAAAAAAAGGCCAGACAATAACCCAg                 >  1:174447/1‑140 (MQ=37)
                                                                                                                          ggggCGGCGGCGATTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAATGCCTGACATTACGCCAGGcc              >  2:101696/1‑140 (MQ=255)
                                                                                                                            ggcgggggcGTTGGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCAGGCCtt            <  2:1519907/140‑1 (MQ=255)
                                                                                                                               ggcggcgATTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCAGGCCTTCTg         >  2:919262/1‑140 (MQ=255)
                                                                                                                                 gggctATTGGCCGCCGCATG‑CGCGCTCCTTGCGCCAGTGGAAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATTACAACATCTTAAAAAAAGGCCTGACATTACGCCAGGCCTTCTGCg       <  2:1467028/139‑1 (MQ=39)
                                                                                                                                 gggcgTTTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCAGGCCTTCTGCg       <  2:157807/139‑1 (MQ=255)
                                                                                                                                      aTTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCAGGCCTTCTGCGttaat  >  1:1453992/1‑140 (MQ=255)
                                                                                                                                      |                                                                                                                                            
TGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACCGCGCAGCGGCGATTTTGTTCGCCAGAGCCCGGGGGTGCAGGGGGCGGCGGCGATTGGCCGCCCCCTG‑CGCGCTCCTTGCGCCAGTGGCAATATGTTGCTTAGCTCATGAAAGGAGCGCAACAAGATGATGAATCAACATATAACAACATCTTAAAAAAAGGCCTGACATTACGCCAGGCCTTCTGCGTTAAT  >  NC_000913/915079‑915352

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑