| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 375124 = | 115 (1.130) | 5 (0.070) | 3/172 | NT | 6.1% | noncoding (195/436 nt) | REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | NC_000913 | 377530 = | 77 (1.130) | intergenic (+219/+5) | yaiL/frmB | DUF2058 family protein/S‑formylglutathione hydrolase | |||||
GTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCGTGCGCAGATGCCTGATGCGACGCTA‑ACGCGTCTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/375299‑375124‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggccggataaggcgttcacgccgcatccggcagtcgtgcTATTATCAACGCATATTCAGTTTATTGGCGTGGTAGGCAATATGCTCGCCAATAAAACTGGAGACAAAATAATAGCTGTGATCAT > NC_000913/377530‑377614 GTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTTCCGCCGCATCCGGCAGTCGTGCGCAGATGCCTGATGCGACGCTA‑ACGCGTCTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGC < 2:1839630/140‑1GTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCGTGCGCAGATGCCTGATGCGACGCTA‑ACGCGTCTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGC < 2:1839666/140‑1GTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCGTGCGCAGATGCCTGATGCGACGCTA‑ACGCGTCTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGC < 2:436608/140‑1 taTTATCAGTCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGTCAGTCGTGCTCAGATACCATAAGCTAAGCTA‑ACGCGTCTTATCAGGCCTACAAATACACGCGCCACCCGTAtccc > 2:1016469/3‑136 taTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCGTGCGCAGATGCCTGATGCGACGCTA‑ACGCGTCTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCC > 2:426912/3‑140 TCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCGTGCGCAGATGCCTGATGCGACGCTA‑ACGCGTCTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCC > 2:225081/1‑140 TCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCGTGCGCAGATGCCTGATGCGACGCTA‑ACGCGTCTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCC > 1:925092/1‑140 TTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCGTGCGCAGATGCCTGATGCGACGCTA‑ACGCGTCTTATCAGGCCTACAAATTCTCGCGCCATCCGTAGGCCGG > 2:874741/1‑140 TTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCGTGCGCAGATGCCTGATGCGACGCTA‑ACGCGTCTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGG < 2:866141/140‑1 TTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCGTGCGCAGATGCCTGATGCGACGCTA‑ACGCGTCTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGG > 2:1275090/1‑140 AGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCGTGCGCAGATGCCTGATGCGACGCTA‑ACGCGTCTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGGATAAG < 2:1411377/140‑1 GGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCGTGCGCAGATGCCTGATGCGACGCTA‑ACGCGTCTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGGATAAGG < 2:1776678/140‑1 GCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCGTGCGCAGATGCCTGATGCGACGCTA‑ACGCGTCTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGGATAAGGC > 2:201468/1‑140 GCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCGTGCGCAGATGCCTGATGCGACGCTA‑ACGCGTCTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGGATAAGGC > 1:730154/1‑140 CAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCGTGCGCAGATGCCTGATGCGACGCTA‑ACGCGTCTTATCAGGCCTACAACTTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCA < 1:683238/140‑1 CAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCGTGCGCAGATGCCTGATGCGACGCTA‑ACGCGTCTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGTATAAGGCGTTCA < 1:683164/140‑1 TTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCGTGCGCAGATGCCTGATGCGACGCTA‑ACGCGTCTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCC < 2:526939/140‑1 TTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGACGTGCGCAGATGCCTGATGCGACGCTA‑ACGCGTCTTATCAGGCCTACAAAGTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCC < 1:752677/140‑1 TCCCGCGCCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCGTGCGCAGATGCCTGATGCGACGCTA‑ACGCGTCTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCG > 1:119027/1‑140 TCCCGCGCCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCGTGCGCAGATGCCTGATGCGACGCTA‑ACGCGTCTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCG < 2:10168/140‑1 CCGCGCCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCGTGCGCAGATGCCTGATGCGACGCTA‑ACGCGTCTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCA < 1:1155948/140‑1 CGCCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCGTGCGCAGATGCCTGATGCGACGCTA‑ACGCGTCTTATCTGGCCTACAAATTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCC > 1:418333/1‑140 CGCCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCGTGCGCAGATGCCTGATGCGACGCTA‑ACGCGTCTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCC > 2:584984/1‑140 CGCCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCGTGCGCAGATGCCTGATGCGACGCTA‑ACGCGTCTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCC > 1:614938/1‑140 CGCCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCGTGCGCAGATGCCTGATGCGACGCTA‑ACGCGTCTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCC > 1:613899/1‑140 CGCCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCGTGCGCAGATGCCTGATGCGACGCTA‑ACGCGTCTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCC > 1:1798351/1‑140 CGCCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCGTGCGCAGATGCCTGATGCGACGCTA‑ACGCGTCTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCC > 1:357566/1‑140 CGCCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCGTGCGCAGATGCCTGATGCGACGCTA‑ACGCGTCTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCC > 1:215494/1‑140 GCCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCGTGCGCAGATGCCTGATGCGACGCTA‑ACGCGTCTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCG > 2:455729/1‑140 TCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCGTGCGCAGATGCCTGATGCGACGCTA‑ACGCGTCTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAG > 1:795656/1‑140 CGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCGTGCGCAGATGCCTGATGCGACGCTA‑ACGCGTCTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTC < 1:47668/140‑1 GTAGGCCGGATAAGGCGTTTCCGCCTCATCCGGCAGTCGTGCGCAGATGCCTGATGCGACGCTA‑ACGCGTCTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCG < 2:1304888/140‑1 GTAGGCCGGATAACGCGTTTACGCCGCATCCGGCAGTCGTGCGCAGATGCCTGATGCGACGCTA‑ACGCGTCTTAACAGGCCTACAAATTCTCGCGCCACCCGAAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCG < 2:237112/140‑1 TAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCGTGCGCAGATGCCTGATGCGACGCTA‑ACGCGTCTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGACGT < 1:521019/140‑1 TTTACGCCGCATCCGGCAGTCGTGCGCAGATGCCTGATGCGACGCTA‑ACGCGTCTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCAACGCAT > 2:1143255/1‑140 CGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCG < 2:1268825/104‑1 CGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCG > 1:1268825/1‑104 TTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCAACGCATATTCAGTTTATTGGCGTGGTAGGCAATATGCTCGCCAATAAAACTGGAGACAAA > 1:1246901/1‑140 TCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCTACGCATATTCAGTTTATTGGCGTGGTAGGCAAGATGCTCGCCAATAATACTGGAGACAAAATAATAGCTGTGAGCAT > 2:1874971/1‑140 TCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCAACGCATATTCAGTTTATTGGCGTGGTAGGCAATATGCTCGCCAATAAAACTGGAGACAAAATAATAGCTGTGATCAT > 2:1169621/1‑140 TCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGCTATTATCAACGCAGATTCTGTTTATTGGCGTGGTAGGCTATATGCTCGCCACTATATCTGGAGGCAATATAGTAGCTGGGATCAT > 2:1168442/1‑140 GTCTTATCAGGCCTACAAATTCCCGCGCCATCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCGTGCGCAGATGCCTGATGCGACGCTA‑ACGCGTCTTATCAGGCCTACAAATTCTCGCGCCACCCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/375299‑375124‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggccggataaggcgttcacgccgcatccggcagtcgtgcTATTATCAACGCATATTCAGTTTATTGGCGTGGTAGGCAATATGCTCGCCAATAAAACTGGAGACAAAATAATAGCTGTGATCAT > NC_000913/377530‑377614 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |