| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,229,177 | A→C | 14.3% | intergenic (+112/+261) | yohP → / ← dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,229,177 | 0 | A | C | 14.3% | 330.6 / 11.9 | 180 | intergenic (+112/+261) | yohP/dusC | uncharacterized protein/tRNA‑dihydrouridine synthase C |
| Reads supporting (aligned to +/- strand): ref base A (28/98); new base C (15/11); total (49/131) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.88e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 187 total aligned reads displayed.
TACTGGTGGTGACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCAT > NC_000913/2229028‑2229325 | tACTGGTGGTGACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCa < 1:198192/150‑1 (MQ=255) tggtggTGACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAggg > 1:784726/1‑150 (MQ=255) ggtggtGACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCCTATAATCACTGGCGCAAGGAGCGC‑GCAgggg < 2:255333/150‑1 (MQ=255) gtggtgACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑gggggggg > 2:5399277/1‑150 (MQ=255) gtggtgACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGAggggg > 2:103937/1‑150 (MQ=255) ggtgACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCgggggggg > 2:2248838/1‑148 (MQ=255) ggtgACTGGCGTATTTAAGATGATATTTTAAAATTAATGAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGggc‑g < 1:204131/150‑1 (MQ=255) gtgACTGGCGTATTAAAGATGATATTATAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTAATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑Ggggggggg‑gg > 2:5543329/1‑150 (MQ=255) gACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTGTGTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑Ggggggggg‑gggc > 1:2406266/1‑148 (MQ=255) gACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑Ggggggggg‑gggc > 1:2100091/1‑148 (MQ=255) tGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAATGAGCGC‑GCAGGGGGC‑GGCCAAt < 1:559336/150‑1 (MQ=255) tGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGGCGGGGGGG‑GGccca > 2:5363763/1‑148 (MQ=255) tGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCGGGGggc‑gggccaa > 2:124724/1‑145 (MQ=255) ggCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAATc < 1:1444217/150‑1 (MQ=255) ggCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAATc < 2:2224417/150‑1 (MQ=255) cGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAATcgc < 2:4576568/150‑1 (MQ=255) aTTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAATcgccgc < 2:3635321/150‑1 (MQ=255) aTTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAATcgccgc < 1:5003472/150‑1 (MQ=255) tttAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGCGGGGGC‑GGCCCATccccccc > 1:2558792/1‑150 (MQ=255) tAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAATcgccgccgc < 2:3885796/150‑1 (MQ=255) aatattatatTTTAAAATTAATTAATGTCATCAGGTCCTAAAATAACTATAATTTTTCAGTCTCTATTCCTGTTGCGCTACTGTCATGTGCATTGCTTCATATAATCACTGGCGCTAGGAGCGG‑GCTGGGGGC‑GGCCAATCgccgccgcc < 1:2620866/144‑1 (MQ=37) aaGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAGCGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGACGGGGC‑GGCCAAACgcccccccc > 1:3322521/1‑150 (MQ=255) aaGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAATCgccgccgcc > 2:5671277/1‑150 (MQ=255) aGATTATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAATCGCCGCCGccc < 1:1055827/150‑1 (MQ=255) aGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGAGGGGGG‑GGCCCCACGCCGcccccc > 2:2183367/1‑150 (MQ=255) atgatATTTTAAAATTAATTAATGTCCTCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAATCGCCGCCGccccc < 1:3873626/150‑1 (MQ=255) tgatATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGCGGGGGC‑GGCCCAAACCCGccccccccc > 2:4973436/1‑149 (MQ=255) atatTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAAACGCCGccccccccacc > 2:3549810/1‑147 (MQ=255) tatTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGC‑GGCCAAAACCCGCCGCCCCCAGCa > 2:1828088/1‑150 (MQ=38) ttAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGCGGGGGCGGGCCAAACccccccccccccccacccc > 1:716740/1‑143 (MQ=255) ttAAAATTAATTAATGTCATCAGGTACGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCGTCATATAATCACTGGCGCAAGGAGCGC‑GGCGGGGGG‑GGGCCCGCGCCGCCGGCGCCCGcccccc > 1:3129533/1‑150 (MQ=255) tAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCAccccc < 2:3231063/150‑1 (MQ=255) tAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCAccccc < 2:78921/150‑1 (MQ=255) aaaTTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGG‑GGCCCAAACCCCCCCCCCCCAGCAccccccc > 2:4030531/1‑148 (MQ=38) aattaattAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGC‑GGCCCAACGCCGCCCCCCCCCGCCCCCCCcgg > 2:4499053/1‑150 (MQ=38) ttactGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGGCATGTGCATTGCTTCATATAATCACTGGCGCACGGAGCGC‑GCTGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTgg < 2:2489221/150‑1 (MQ=255) ttaatGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGC‑CGCCAAACGCCGCCCCCCCCCGCACCCCCCGGcacagg > 2:1439416/1‑145 (MQ=37) taatGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGc < 2:599459/150‑1 (MQ=255) taatGTAATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATTTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGc < 2:1787544/150‑1 (MQ=255) aatGTCATCAGGTCCGAAAATAACTAGACTATTTCAGTCTCGCATCCTGTTGCGCTCCTGTCCTGTGCATTGGTTCATATAATCACTGGCGAAAGGAGAGC‑GCAGGGGGC‑GGCCAATCGGCGGCGCCCCCTGCACCCCCGGGCTCTGGCg > 2:3344151/1‑150 (MQ=25) atGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGa < 2:4955959/150‑1 (MQ=255) tGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGGGGGGGG‑GGCCCAACGCCCCCCCCCCCCCCACCCCCCGGCGCAGGCgcc > 1:5313376/1‑148 (MQ=255) tcatcaGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACa < 2:1279481/150‑1 (MQ=255) atcaGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGCGGCGGGGGGG‑GGCCAAAC‑CCGCCCCCCCCAGCCCCCCCCGGCCCGGGCGGCCaaa > 1:4110856/1‑150 (MQ=255) tggTCCTAAAATAACGATATTATTACAGTCTATAAGCGTTTTGCGCTCCTTTCTTGTGAATTGCTTCATATAATCCCTGGCGCACGGCGGGC‑GCCGGGGGG‑GGCAAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATc < 1:4345967/149‑1 (MQ=16) aGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GGCGGGGGG‑GGCCCAACCCCCCCCCCCCCAGCCCCCCCCCGCGCAGGCCCACaaaaaa > 1:452995/1‑148 (MQ=255) aGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATc < 2:1672409/150‑1 (MQ=255) gTCCGACCATAACGCGAAGATTTCAGTCTCTCAGCCTGGTGCGCTCCTGTCAGGTGCATTGCTTCATCCAAACCCTGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCACACGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATcgc < 2:3020090/150‑1 (MQ=18) gTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATcgc < 2:4169933/150‑1 (MQ=255) aaaaTAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAATCGCCGCCGCCCCCAGCCCCCCCCGGCACAGGCGAACAAAAAcgccgcag > 2:3863860/1‑148 (MQ=25) aTAACGAGATTATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTgcgc < 2:1145046/150‑1 (MQ=255) gaATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACGGGCGCAAGGAGCGC‑GCCGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGccc < 2:1667468/150‑1 (MQ=255) tatTTCTGTCTCTCATCCTGTTGCGCTCCTGTCATGTGAATTGCTACATATAATCACTGGCGCACGGAGCGC‑GCAGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCg < 1:3253199/150‑1 (MQ=255) atTTCAGTCTCTCTTCGTGTTGCGCTCCTGTCTTGTGAATTGATTAATATAACCACTGGCGCATGGAGCGC‑GCTGGGGGC‑GGCCAACCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCgg < 1:1367621/150‑1 (MQ=17) tcccgcctctcAGCGTGTGGCGCCCCTGTCTTGTGATTTTATTCATATAAACCCGGGCGCAGGGCGCGG‑GCGGGGGGC‑GGCCACCCGCCGCCGCCCCCGGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCt < 1:519400/144‑1 (MQ=9) gtatctaATCCTGTTGCGCTCCTGTAATGTGCATTGCTTAATATAATCACTGGCGAATGGAGCGC‑GCTGGGGGG‑GGCCAACCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATc < 1:5681562/147‑1 (MQ=18) tctctcATCCTGTGGCGCTCCTTTCTTGTGCTTTGTTTCATATAATCACTGGCGCATGGCGCGC‑GCTGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATcc < 1:1947138/150‑1 (MQ=17) ctctaATCCTGTTGCGCGCCTGTCTTGTGCTTGGCTTCATATAACCCCGGGCGCATGGCGCGC‑GCCGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATccc < 1:2901353/150‑1 (MQ=17) ctcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCtt < 1:3672562/150‑1 (MQ=255) tcATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTa < 2:4477963/150‑1 (MQ=255) aTCCTTTTGCGCTCCTTTCTTGTGCATTGCTTAATATAATCCCGGGCGCACGGAGCGC‑GCCGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACg < 1:1249408/150‑1 (MQ=17) aTCCTGTTGCGCTCCTGGCATGTGAATTGCTTAATATAATCCCGGGCGCATGGAGCGC‑GCAGGGGGC‑GGCCAAGCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACg < 1:5166465/150‑1 (MQ=17) gTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCCGGGGGC‑GGCCAAACCCCCCCCCCCCCCGCACCCCCCGGCGCAGGCGAACAAAAAAGCCCCTGCGCGGTGCCCACGGCTTATACCATAAGGCTAc > 2:1920451/1‑150 (MQ=17) gTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAAAAGCCGCCCCCCCCAGCCCCCCCCCGCGCATGCGAACAAAATACCCGCGGCGCGGTGCCCTCGGCTTATCACTAACCGCAAc > 2:2368161/1‑150 (MQ=17) ttGCGCTCCTGTCTTGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAAC‑AAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCg < 1:2147739/150‑1 (MQ=255) cTCCTGTCATGTGCATTGCTTCATTTAATCACTGGCGAACGGAGGGC‑GCAGGGGGC‑GGCAAATCGCGGCCGCCCCGTGCACCCGCTGGCTCTGGCGATGATAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTc < 2:66155/150‑1 (MQ=17) atcatgacATGTGAATTGATTCATATAATCACTGGCGAAAGGAGCGC‑GCTGGGGGC‑GGCAAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTc < 1:4379943/143‑1 (MQ=14) gTCATGTGCATTGCTTCATATAATCACTGGCGCATGGAGCGC‑GCAGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGgcg < 1:4863410/150‑1 (MQ=255) aggtgCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGa < 2:5622371/148‑1 (MQ=255) aTGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGa < 2:3925117/150‑1 (MQ=255) tttgctttgcttAATATAATCACTGGCGCAAGGAGCGC‑GCTGGGGGC‑GGCCAATCGACGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATGCCTTACGGCTACCGGGTCGGGCGCGAg < 2:4404163/148‑1 (MQ=14) tgtgCCTTGCTTCATATACTCACGGGCGCACGGAGCGC‑GCCGGGGGC‑GGCCACGCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAg < 1:4143110/150‑1 (MQ=14) cATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAATCCCCCCCCCCCCCAGCAACCCCCGGCTCAGGCGAACAAAATCGCCGCTGCGCGGTGGCCACGGCGTATCCCTTAAGGCTACCGGGTGGGGCGCGAGGGaa > 2:4840539/1‑150 (MQ=14) cTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAATCCCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATcc < 1:2951294/150‑1 (MQ=255) tCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCt < 2:2393302/150‑1 (MQ=39) tCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCt < 2:2831845/150‑1 (MQ=39) tCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCt < 2:2393522/150‑1 (MQ=39) taATCACTGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTaaa < 1:5228425/150‑1 (MQ=35) aaTCACTGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCACTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTaaaa < 2:1536628/150‑1 (MQ=21) aaTCACGGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTaaaa < 2:716740/150‑1 (MQ=21) aTCACTGGCGCAAGGAGCGC‑GCTGGGGGT‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAAc < 1:5370502/150‑1 (MQ=18) aTCACTGGCGCAAGGAGCGC‑GCAGGGGTT‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAAc < 1:5370483/150‑1 (MQ=18) cACTGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAAcgc < 1:4870063/150‑1 (MQ=32) cTGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACgcgc < 2:3607324/150‑1 (MQ=32) cTGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACgcgc < 1:3603776/150‑1 (MQ=32) cTGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACgcgc < 1:2226849/150‑1 (MQ=32) cTGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACgcgc < 2:5215654/150‑1 (MQ=32) tGGCGCAAGGAGCGC‑GCTGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGcc < 1:1005777/150‑1 (MQ=17) tGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGcc < 1:197342/150‑1 (MQ=32) aaGGAGCGC‑GCCGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGc < 1:873747/150‑1 (MQ=17) aGGAGCGC‑GCAGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAACATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGATGTAACATCCCTGTAAAACGCGCCCTCAGcc < 2:4409903/150‑1 (MQ=17) aGGAGCGC‑GCAGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGcc < 2:2902389/150‑1 (MQ=32) gAGCGC‑GCTGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCca < 1:5664912/150‑1 (MQ=17) gAGCGC‑GCAGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCca < 1:2683878/150‑1 (MQ=32) aGCGC‑GCAGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCcac < 2:4318884/150‑1 (MQ=32) cgc‑gcAGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACAt < 1:149215/150‑1 (MQ=32) gc‑gcAGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGTCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATc > 2:3471563/1‑150 (MQ=17) gc‑gcAGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATc > 2:3055019/1‑150 (MQ=32) cAGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCAt > 2:3727423/1‑150 (MQ=32) cAGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTCCCCCCCGCGCCCTCAGCCCACATCCAt < 1:5363763/150‑1 (MQ=11) | TACTGGTGGTGACTGGCGTATTTAAGATGATATTTTAAAATTAATTAATGTCATCAGGTCCGAAAATAACGAGAATATTTCAGTCTCTCATCCTGTTGCGCTCCTGTCATGTGCATTGCTTCATATAATCACTGGCGCAAGGAGCGC‑GCAGGGGGC‑GGCCAATCGCCGCCGCCCCCTGCACCCCCGGGCTCTGGCGAACAAAATCGCCGCTGCGCGGTGCCCTCGGCTTATCCCTTACGGCTACCGGGTCGGGCGCGAGGTAACATCCCTGTAAAACGCGCCCTCAGCCCACATCCAT > NC_000913/2229028‑2229325 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |