New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	939013 =	63 (0.700)	5 (0.060)	5/266	NT	7.3%	coding (1020/1344 nt)	rarA	recombination intermediate processing DNA‑dependent ATPase
	?	NC_000913	939068 =	66 (0.750)					coding (1075/1344 nt)	rarA	recombination intermediate processing DNA‑dependent ATPase

ACGATATTCCTGCCCGTAGCCCATTTCCTTCATTAATTTCGTCGGCGCATTACGCAAATGAACCGGCACGTCATAATCCGGGCGTTCGCGAGCATCGGCCAGCGCGGCTTT‑AAACGCAGTGTAGACAGCGTTGCTTTTTGGCGCGCAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/939163‑939013 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCGGTGAGGTTTACTTCC  >  NC_000913/939068‑939212                                                                                                                                                                                                                                                                                                           ACGATATTCCTGCCCGTAGCCCATTTCCTTCATTAATTTCGTCGGCGCATTACGCAAATGAACCGGCACGTCATAATCCGGGCGTTCGCGAGCATCGGCCAGCGCGGCTTT‑AAACGCAGTGTAGACAGCGTTGCTTTTTGGCGCGCAGG                                                                                                                                                     >  2:1145798/1‑149   GATATTCCTGCCCGTAGCCCATTTCCTTCATTAATTTCGTCGGCGCATTACGCAAATGAACCGGCACGTCATAATCCGGGCGTTCGCGAGCATCGGCCAGCGCGGCTTT‑AAACGCAGTGTAGACAGCGTTGCTTTTTGGCGCGCAGGCC                                                                                                                                                   >  2:1284004/1‑149    ATATTCCTGCCCGTAGCCCATTTCCTTCATTAATTTCGTCGGCGCATTACGCAAATGAACCGGCACGTCATAATCCGGGCGTTCGCGAGCATCGGCCAGCGCGGCTTTAAAACGCAGTGTAGACAGCGTTGCTTTTTGGCGCGCAGGCC                                                                                                                                                   <  1:180348/149‑1                                                 ATTACGCAAATGAACCGGCACGTCATAATCCGGGCGTTCGCGAGCATCGGCCAGCGCGGCTTT‑AAACGCAGTGTAGACAGCGTTGCTTTTTGGCGCGCAGGC                                                                                                                                                    >  1:1029602/1‑102                                                 ATTACGCAAATGAACCGGCACGTCATAATCCGGGCGTTCGCGAGCATCGGCCAGCGCGGCTTT‑AAACGCAGTGTAGACAGCGTTGCTTTTTGGCGCGCAGGC                                                                                                                                                    <  2:1029602/102‑1                                                                                          GAGCATCGGCCAGCGCGGCTTT‑AAACGCAGTGTAGACAGCGTTGCTTTTTGGCGCGCAGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAG                                                            >  2:317760/1‑149                                                                                               TCGGCCAGCGCGGCTTT‑AAACGCAGTGTAGACAGCGTTGCTTTTTGGCGCGCAGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATA                                                       >  2:1513233/1‑149                                                                                                            CTTT‑AAACGCAGTGTAGACAGCGTTGCTTTTTGGCGCGCAGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCAT                                          >  1:1033000/1‑149                                                                                                                   ACGCAGTGTAGACAGCGTTGCTTTTTGGCGCGCAGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAA                                    <  1:317760/149‑1                                                                                                                                       CTTTTTGGCGCGCAGGCCGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCGG                <  1:1513233/149‑1                                                                                                                                                     GGCCGATGCTCGCGAACGCCCGGATTATGACGTGACGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCGGTGAGGTTTACTTCC  >  1:1123040/1‑149                                                                                                                                                        CGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCGGTGAGG           >  1:666699/1‑137                                                                                                                                                        CGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCGGTGAGG           <  2:666699/137‑1                                                                                                                                                                                                                                                                                                           ACGATATTCCTGCCCGTAGCCCATTTCCTTCATTAATTTCGTCGGCGCATTACGCAAATGAACCGGCACGTCATAATCCGGGCGTTCGCGAGCATCGGCCAGCGCGGCTTT‑AAACGCAGTGTAGACAGCGTTGCTTTTTGGCGCGCAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/939163‑939013 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccGATGCTCGCGAACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCGGTGAGGTTTACTTCC  >  NC_000913/939068‑939212

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.