| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,377,770 | A→C | 6.9% | intergenic (‑350/+45) | sspA ← / ← rpsI | stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog/30S ribosomal subunit protein S9 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,377,770 | 0 | A | C | 6.9% | 289.1 / 11.0 | 101 | intergenic (‑350/+45) | sspA/rpsI | stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog/30S ribosomal subunit protein S9 |
| Reads supporting (aligned to +/- strand): ref base A (52/42); new base C (5/2); total (57/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.65e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.18e-01 | |||||||||||
Only 100 of 104 total aligned reads displayed.
GGAAAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTCTTACGTTCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGC > NC_000913/3377621‑3377914 | ggAAAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGa > 1:1059627/1‑150 (MQ=255)ggAAAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCATTATTTGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGa > 2:1085081/1‑150 (MQ=255) gAAAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGaa > 2:1270209/1‑150 (MQ=255) aaaaGAGATGCGCTTTAGTCTGAAATATTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGc < 1:861053/150‑1 (MQ=255) agagATGCGCTTTAGTCTGAAATAGTTGTCTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCggg < 1:12656/150‑1 (MQ=255) agagATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCggg > 2:1556505/1‑150 (MQ=255) agagATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCggg < 1:1325746/150‑1 (MQ=255) gagaTGCGCTTTAGTCTTAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGt < 2:237891/150‑1 (MQ=255) gagaTGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGt < 2:855843/150‑1 (MQ=255) gagaTGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGt > 2:1204991/1‑150 (MQ=255) tGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGttttt > 1:854433/1‑150 (MQ=255) tGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGttttt < 2:1228902/150‑1 (MQ=255) cgcTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCTTCGGCGGGttttttt < 2:56436/150‑2 (MQ=255) cgcTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTc < 1:1621217/150‑1 (MQ=255) cgcTTTAGTCTGAAATAGTTGACTTAGTCCCTTATAGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTc < 1:1081929/150‑1 (MQ=255) gcTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCAGACGAAGCGGGTTTTTTCg > 1:1099144/1‑150 (MQ=255) cTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGa < 2:470974/150‑1 (MQ=255) tAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCTTCGGCGGGtttttttatagc < 1:1354542/150‑7 (MQ=255) gTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTATAAAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAAt > 1:585437/1‑150 (MQ=255) gAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGttt > 1:939417/1‑150 (MQ=255) aTAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTAATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCt < 1:827045/150‑1 (MQ=255) tGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCgg < 2:729114/150‑1 (MQ=255) gACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGa > 2:416801/1‑150 (MQ=255) tattCCCTTCTTGGCGATGTGGTGTTGGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGATTTTACGCTGATTCAGTTTTTAGATAT‑AAAAAAACCCGCCGATGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAg < 1:236484/147‑1 (MQ=255) tAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAg > 1:125287/1‑150 (MQ=255) cccTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑GAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGc < 1:1486911/150‑1 (MQ=255) ccTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGcc < 1:1327645/150‑1 (MQ=255) cTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTATAAAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGcc < 2:585437/150‑1 (MQ=255) tATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAAt < 2:139014/150‑1 (MQ=255) tATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCAGGAGCAGAAGCCAAt > 1:538329/1‑150 (MQ=255) aTTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAAtt > 1:1140685/1‑150 (MQ=255) ttGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTa < 1:416801/150‑1 (MQ=255) cGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGt > 2:1029215/1‑150 (MQ=255) gATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGtt < 2:854433/150‑1 (MQ=255) tgGTTTTTGTTTTACCTGTCTGTCAGGTTGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTATCGTTTGga < 1:1085081/150‑1 (MQ=255) tgGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGga < 1:248622/150‑1 (MQ=255) tgGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGga < 2:1375707/150‑1 (MQ=255) ggTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGgag > 2:472094/1‑150 (MQ=255) ggTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGgag > 1:1419607/1‑150 (MQ=255) gTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAATCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGgaga < 1:468015/150‑1 (MQ=255) gTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGgaga < 2:4839/150‑1 (MQ=255) gTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGGTTTTACGCTGATTCAGATTTTTGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCTGAGCAGAAGCCAATTAACGTTTgggta > 1:674736/1‑147 (MQ=255) tttttGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTTACGTTTGGAGaa > 2:588844/1‑150 (MQ=255) ttttGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTATTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAAc < 1:1052424/150‑1 (MQ=255) tttGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACt < 2:1206344/150‑1 (MQ=255) gTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCg > 1:1639066/1‑150 (MQ=255) gTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGACGAAGCAGAAGCAAATTAACGTTTGGAGAACTgag > 1:331960/1‑148 (MQ=255) ttttACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGaa < 2:1352144/124‑1 (MQ=255) ttttACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGaa > 1:1352144/1‑124 (MQ=255) ttttACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCgg > 2:1300157/1‑150 (MQ=255) tACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGgacg < 2:6740/150‑1 (MQ=255) aCCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGgacga > 1:826171/1‑150 (MQ=255) ccTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGgacgac > 2:108943/1‑150 (MQ=255) gtctgtcAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAAGTGCGgacgacgac > 2:1523176/1‑150 (MQ=255) tgtcAGGTGGCAGCAAAAAGCAACTTTCCAGGTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTg < 1:1067727/150‑1 (MQ=255) aGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCttt > 2:1266260/1‑150 (MQ=255) ggTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTa > 1:736478/1‑150 (MQ=255) ggTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTa > 1:433111/1‑150 (MQ=255) ggTGGCAGCAAAAAGCAACTTTCCAGATTTAACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTa < 2:416360/150‑1 (MQ=255) ggCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGc > 1:1408517/1‑150 (MQ=255) gcagcaAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACgaa > 1:149842/1‑148 (MQ=255) gcagcaAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCa < 2:1059627/150‑1 (MQ=255) caAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCTGAGCAGAAGCCAATTAACGTTTGGAGAACTGCTGACGACGACGTGCTTTACGCAGAcc > 1:1106008/1‑150 (MQ=255) aaaGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGAc > 2:1643939/1‑150 (MQ=255) aGCAACTTTCCAGTATTTACGCTTATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCAGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACtt > 2:372285/1‑150 (MQ=255) cAACATTCCATTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTc < 1:620346/150‑1 (MQ=255) aaCTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTCt > 1:1010016/1‑150 (MQ=255) cTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTATTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTCTTa > 2:802238/1‑150 (MQ=255) tttttACGCTGATTCAGATTTTAGCTCT‑AAAAAAACCCGCCGACGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTACCGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTCTTACGTTCAAc < 1:270583/150‑1 (MQ=255) ttttACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTCTTACGTTCAAcc < 1:583310/150‑1 (MQ=255) tttACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTCTTACGTTCAACCt > 2:1454131/1‑150 (MQ=255) cGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTCTTACGTTCAACCTGACg > 1:644797/1‑150 (MQ=255) cGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTCTTACGTTCAACCTGACg > 1:739862/1‑150 (MQ=255) gATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTCTTACGTTCAACCTGACGAGCg > 2:1548489/1‑150 (MQ=255) aTTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTCTTACGTTCAACCTGACGAGCGt > 1:932776/1‑150 (MQ=255) ttCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTCTTACGTTCAACCTGACGAGCGTc > 1:779910/1‑150 (MQ=255) tCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGCCGACGTGCTTTACGCAGCCCGACTTTCTTTCGTTCATCCTGACGAGCGTCa > 2:1520666/1‑150 (MQ=255) cAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGTAGCAGAGGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTCTTACTTTCAACCTGACGAGCGTCAc > 2:1504657/1‑150 (MQ=255) cAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTCTTACGTTCAACCTGACGAGCGTCAc < 1:1029215/150‑1 (MQ=255) aGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTCTTACGTTCAACCTGACGAGCGTCACg < 1:1655479/150‑1 (MQ=255) aGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTCTTACGTTCAACCTGACGAGCGTCACg > 1:146209/1‑150 (MQ=255) gATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTCTTACGTTCAACCTGACGAGCGTCACGa > 1:651239/1‑150 (MQ=255) aTTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTCTTACGTTCAACCTGACGAGCGTCACGAg < 1:1643939/150‑1 (MQ=255) tttaatcTAT‑AAAAAAACCCGCCGAAGAGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGAAGAAGCCAATTAACGTTTGGAGAAATGCGGACGACGACGTGCTTTACGCAGACCGACTTTCTTACGTTCAACCTGACGAGCGTCACGAGt < 2:645046/144‑1 (MQ=255) tttAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTCTTACGTTCAACCTGACGAGCGTCACGAGTa > 1:1469713/1‑150 (MQ=255) aGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTCTTACGTTCAACCTGACGAGCGTCACGAGTAACg > 2:144370/1‑150 (MQ=255) gaaaaaaCCCGCTTCGGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTCTTACGTTCAACCTGACGAGCGTCACGAGTAACGAAGCCa > 2:1285536/2‑150 (MQ=255) gaaaaaaCCCGCTTCGGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTCTTACGTTCAACCTGACGAGCGTCACGAGTAACGAAGCCa > 1:1633560/2‑150 (MQ=255) aaaaacaCCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTCTTACGTTCAACCTGACGAGCGTCACGAGTAACGAAGCCa < 1:449858/150‑1 (MQ=255) aaaaaaCCCGCTTCGGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGTGGACGCCGACGTGCTTTACGCAGACCCACTTTCTTACGTTCAACCTGACGCGCGTCACGAGTAACgccgcccg > 2:106443/1‑143 (MQ=255) aaaaaaCCCGCTTCGGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTCTTACGTTCAACCTGACGAGCGTCACGAGTAACGAAGCCAg > 1:241759/1‑150 (MQ=255) aaaaaCCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTTACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTCTTACGTTCAACCTGACGAGCGTCACGAGTAACGAAGCCAGc < 1:588844/150‑1 (MQ=255) aaaaCCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTCTTACGTTCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCt > 1:142279/1‑150 (MQ=255) aaaaCCCGCCGAAGCGGGTATTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGGACTGCGCACGACGACGTGCTTTACGCAGACCGACTTTCTTACGTTCAACCTGACCAGCGTCACGAGTAACGAAGCCAGCt > 1:1551782/1‑150 (MQ=255) aaaCCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGCCCGACTTTCTTACGTTCAACCTGCCGAGCGTCACGAGTAACGAAGCCAGCtt > 1:329271/1‑150 (MQ=255) aaCCCGCCGAAGCGGGGTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGCCCTGCGGACGACGACGTGCGTTAAGCAGACCGACTTTCTTACGTTCATCCTGACGCGCGTCACGAGTAACGAAGCCAGCgtt > 1:1446475/1‑150 (MQ=255) cccGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTCTTACGTTCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTAc > 1:666526/1‑150 (MQ=255) cgccgAAGCGGGTTTTTTCGAAAATTTTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTCTTACGTTCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGc < 1:802238/150‑1 (MQ=255) cgccgAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTCTTACGTTCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGc < 2:736478/150‑1 (MQ=255) cgccgAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGAAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGCCGTGCTTTACGCAGACCGACTTTCTTACGTTCACCCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGc > 1:1276416/1‑150 (MQ=255) | GGAAAAAGAGATGCGCTTTAGTCTGAAATAGTTGACTTAGTCCCTTATTGGCGATGTGGTTTTTGTTTTACCTGTCTGTCAGGTGGCAGCAAAAAGCAACTTTCCAGTTTTTACGCTGATTCAGATTTTAGCTAT‑AAAAAAACCCGCCGAAGCGGGTTTTTTCGAAAATTGTTTTCTGCCGGAGCAGAAGCCAATTAACGTTTGGAGAACTGCGGACGACGACGTGCTTTACGCAGACCGACTTTCTTACGTTCAACCTGACGAGCGTCACGAGTAACGAAGCCAGCTTTACGC > NC_000913/3377621‑3377914 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |