| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 574,496 | C→T | 7.6% | intergenic (+157/+33) | quuD → / ← nmpC | DLP12 prophage; putative antitermination protein/DLP12 prophage; truncated outer membrane porin (pseudogene);IS, phage, Tn; Phage or Prophage Related; outer membrane porin protein; locus of qsr prophage |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 574,496 | 0 | C | T | 7.6% | 433.8 / 17.7 | 132 | intergenic (+157/+33) | quuD/nmpC | DLP12 prophage; putative antitermination protein/DLP12 prophage; truncated outer membrane porin (pseudogene);IS, phage, Tn; Phage or Prophage Related; outer membrane porin protein; locus of qsr prophage |
| Reads supporting (aligned to +/- strand): ref base C (60/62); new base T (2/8); total (62/70) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.02e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.60e-01 | |||||||||||
Only 100 of 134 total aligned reads displayed.
ATTGTTTACTAAAAATTATTAAAAATGGGGCGTTGAGACGCCCCCAAAAATAAAGGGTAATATATAACAGAAGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTC > NC_000913/574347‑574645 | aTTGTTTACTAAAAATTATTAAAAATGGGGCGTTGAGACGCCCCCAAAAATAAAGGGTAATATATAACAGAAGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAAc < 2:921705/150‑1 (MQ=255) tGTTTACTAAAAATTATTAAAAATGGGGCGTTGAGACGCCCCCAAAAATAAAGGGTAATATATAACAGAAGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGc < 2:1188675/150‑1 (MQ=255) tACTAAAAATTATTAAATATGGGGCGTTGAGACGCCCCCAAAAATAAAGGGTAATATATAACAGAAGGTTTAGATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACGTATATGTTG‑GGGAGGCAACGCCTcc > 2:1058480/1‑150 (MQ=255) cTAAAAATTATTAAAAATGGGGCGTTGAGACGCCCCCAAAAATAAAGGGTAATATATAACAGAAGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCGTTGCCTcccc < 2:1962579/150‑2 (MQ=255) cTAAAAATTATTAAAAATGGGGCGTTGAGACGCCCCCAAAAATAAAGGGTAATATATAACAGAAGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCGTTGCCTcccc < 2:1967552/150‑2 (MQ=255) cTAAAAATTATTAAAAATGGGGCGTTGAGACGCCCCCAAAAATAAAGGGTAATATATAACAGAAGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCGTTGCCTcccc < 2:671336/150‑2 (MQ=255) cTAAAAATTATTAAAAATGGGGCGTTGAGACGCCCCCAAAAATAAAGGGTAATATATAACAGAAGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCGTTGCCTcccc < 2:2148047/150‑2 (MQ=255) cTAAAAATTATTAAAAATGGGGCGTTGAGACGCCCCCAAAAATAAAGGGTAATATATAACAGAAGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCGTTGCCTcccc < 2:2359347/150‑2 (MQ=255) tAAAAATTATTAAAAATGGGGCGTTGAGACGCCCCCAAAAATAAAGGGTAATATATAACAGAAGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGc > 2:1228104/1‑150 (MQ=255) aaaaTTATTAAAAATGGGGCGTTGAGACGCCCCCAAAAATAAAGGGTAATATATAACAGAAGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCaa > 1:909646/1‑150 (MQ=255) aaaaTTATTAAAAATGGGGCGTTGAGACGCCCCCAAAAATAAAGGGTAATATATAACAGAAGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCaa > 1:932572/1‑150 (MQ=255) aaaTTATTAAAAATGGGGCGTTGAGACGCCCCCAAAAATAAAGGGTAATATATAACAGAAGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAAc < 2:697518/150‑1 (MQ=255) ataAAACTGGGGCGTTGAGACGCCCCCAAAAAAAACGGCAAATATATAACAGAAGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCt < 1:1811596/149‑1 (MQ=255) aaaaTGGGGCGTTGAGACGCCCCCAAAAATAAAGGGTAATATATAACAGAAGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTGCGGGAGGCGTTGCCTCCC‑CAACatataagtg < 1:2324617/150‑6 (MQ=38) aaaaTGGGGCGTTGAGACGCCCCCAAAAATAAAGGGTAATATATAACAGAAGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCtttt > 2:476069/1‑150 (MQ=255) aaaaTGGGGCGTTGAGACGCCCCCAAAAATAAAGGGTAATATATAACAGAAGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCtttt > 2:1543057/1‑150 (MQ=255) aaaTGGGGCGTTGAGACGCCCCCAAAAATAAAGGGTAATATATAACAGAAGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCttttt > 2:2148437/1‑150 (MQ=255) aaaTGGGGCGTTGAGACGCCCCCAAAAATAAAGGGTAATATATAACAGAAGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCttttt > 2:2221776/1‑150 (MQ=255) aaaTGGGGCGTTGAGACGCCCCCAAAAATAAAGGGTAATATATAACAGAAGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCttttt > 2:36508/1‑150 (MQ=255) aaaTGGGGCGTTGAGACGCCCCCAAAAATAAAGGGCAATATATAACAGAAGGTGTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCACCATATCttttt > 2:1670495/1‑150 (MQ=255) aagggggCGATGAGACGCCCCCAAAAACAAAGGGTAATATATAACATAAGGTTTATATAGTTAGACGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCAACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTc < 1:155809/147‑1 (MQ=255) aaTGGGGCGTTGAGCCGCCCCCAAAAATAAAGGGTAATATATAACAGACGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCAACTTATATTTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTc < 1:1894592/150‑1 (MQ=255) aTGGGGCGTAGAGACGCCCCCAAAAAAAAACCCTAATATATAACACAAGCTTTATATAGTTAGAACCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCg < 2:1075349/150‑1 (MQ=255) tGGGGCGTTGAGACGCCCCCAAAAATAAAGGGTAATATATAACAGCAGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGt < 2:2028453/150‑1 (MQ=255) gggCGTTGAGACGCCCCCAAAAATAAAGGGTAATATATAACAGAAGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTaa > 1:1374746/1‑150 (MQ=255) ggCGTTGAGACGCCCCCAAAAATAAAGGGTAATATATAACAGAAGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAAt < 2:261700/150‑1 (MQ=255) cGTTGAGACGCCCCCAAAAATAAAGGGTAATATATAACAGAAGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCa > 1:1184164/1‑150 (MQ=255) cGTTGAGACGCCCCCAAAAATAAAGGGTAATATATAACAGAAGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCa > 1:880860/1‑150 (MQ=255) cGTTGAGACGCCCCCAAAAATAAAGGGTAATATATAACAGAAGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCa > 1:1184185/1‑150 (MQ=255) cGTTGAGACGCCCCCAAAAATAAAGGGTAATATATAACAGAAGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCa < 2:1642847/150‑1 (MQ=255) cGCCCCCAAAAATAAAGGGTAATATATAACAGAAGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGaa > 2:375591/1‑150 (MQ=255) cAAAAATAAAGGGTAATATATAACAGAAGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCACAACATATCTTTTTCGTAATCAGATTAGAACTGGTa > 2:1938173/1‑150 (MQ=255) aaaaTAAAGGGTAATATATAACAGAAGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCACCATATCTTTTTCGTAATCAGATTAGAACTGGTaaa > 2:2149759/1‑150 (MQ=255) aaaaTAAAGGGTAATATATAACAGAAGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTCATCAGATTAGAACTGGTaag > 2:1294917/1‑149 (MQ=255) aaaaTAAAGGGTAATATATAACAGAAGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTaaa < 1:634781/150‑1 (MQ=255) aaaaTAAAGGGTAATATATAACAGAAGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTaaa < 1:329755/150‑1 (MQ=255) aaaaTAAAGCCTAATATATAACACAAGCATTATATAGTTAGAAGCAACGTTCTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTaaa < 2:1676011/150‑1 (MQ=255) aaTAAAGGGTAATATATAACAGAAGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAAcc < 2:257256/150‑1 (MQ=255) aaaGGGTAATATATAACAGAAGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGa < 1:385545/150‑1 (MQ=255) gggTAATATATAACAGAAGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCt < 2:18360/150‑1 (MQ=255) gTAATATATAACAGACGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTAc < 1:496681/150‑1 (MQ=255) gTAATATATAACAGAAGGTTTATATTGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTAc < 1:559050/150‑1 (MQ=255) gTAATATATAACAGAAGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTAc < 2:2159649/150‑1 (MQ=255) tAATATATAACAGAAGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACa < 1:1071024/150‑1 (MQ=255) atataACAGAAGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCaa < 2:1726504/150‑1 (MQ=255) ggTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGtcatca > 2:2086604/1‑150 (MQ=255) ggTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGtcatca < 2:94325/150‑1 (MQ=255) tttATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGt > 1:449397/1‑150 (MQ=255) ttAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACAcc > 2:1314520/1‑150 (MQ=255) ttAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACAcc > 2:550215/1‑150 (MQ=255) ttAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACAcc > 2:549865/1‑150 (MQ=255) ttAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACAcc > 2:364234/1‑150 (MQ=255) gAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAg < 2:313908/150‑1 (MQ=255) gCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGc > 2:1582655/1‑150 (MQ=255) gCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGc < 1:822525/150‑1 (MQ=255) cAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATAAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCt > 2:30882/1‑150 (MQ=255) ggTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTa < 1:1013767/150‑1 (MQ=255) ggTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTa < 2:2178383/150‑1 (MQ=255) ggTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTa < 1:377761/150‑1 (MQ=255) ggTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTa < 2:1943440/150‑1 (MQ=255) ggTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTa < 2:1681323/150‑1 (MQ=255) gTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTAg < 1:927482/150‑1 (MQ=255) tgCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTAGGGaa < 1:555128/150‑1 (MQ=255) tgCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTAGGGaa < 1:2080620/150‑1 (MQ=255) tgCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTAGGGaa < 1:2080565/150‑1 (MQ=255) cTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTAGGGAAgg < 1:507838/150‑1 (MQ=255) cTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTAGGGAAgg > 2:1707433/1‑150 (MQ=255) cTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTAGGGAAgg < 1:45040/150‑1 (MQ=255) tCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTAGGGAAGGTg > 2:2179287/1‑150 (MQ=255) aGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTAGGGAAGGTGCGAAt > 2:2113/1‑150 (MQ=255) aGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTAGGGAAGGTGCGAATAAGc < 2:579321/150‑1 (MQ=255) ggCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTAGGGAAGGTGCGAATAAGCggg < 1:130674/150‑1 (MQ=255) gCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTAGGGAAGGTGCGAATAAGCgggg > 1:757708/1‑150 (MQ=255) ttGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTAGGGAAGGTGCGAATAAGCGGGGaa > 1:2239305/1‑150 (MQ=255) ttGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTAGGGAAGGTGCGAATAAGCGGGGaa > 2:401782/1‑150 (MQ=255) ttGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTAGGGAAGGTGCGAATAAGCGGGGaa > 2:1164768/1‑150 (MQ=255) aGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTAGGGAAGGTGCGAATAAGCGGGGAAAtt < 1:1230237/150‑1 (MQ=255) gAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTAGGGAAGGTGCGAATAAGCGGGGAAAttctt > 2:1814933/1‑150 (MQ=255) ccACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTtctc > 1:172008/1‑150 (MQ=255) cACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCg < 2:1754714/150‑1 (MQ=255) cACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCg < 2:1672431/150‑1 (MQ=255) cTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGc < 1:36508/150‑1 (MQ=255) cTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGc < 1:2221776/150‑1 (MQ=255) ttATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTTATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCt < 1:1881339/150‑1 (MQ=255) ttATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCt < 1:286976/150‑1 (MQ=255) agatatGTTGCGGGCGGCGTTGCCTCCC‑CAACATATCTTTTTCGTTATCAGATTAGAACTGGTAAAACAGACCTACAGCAACGATGTCATAAGTGCTTAAACCGAGTGCTGGATGGAAGGTGCGAATAAGCGGGGCAATTCTTCTCGGCt > 1:547795/3‑150 (MQ=255) atGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACt > 2:1804899/1‑150 (MQ=255) ttgcgggAGGCGTTGCCTCCC‑CAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCGCGGCTGACTccg > 1:2280726/5‑148 (MQ=38) gtG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAg < 1:2083774/149‑1 (MQ=255) atG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTAGGGACGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAg > 2:2327714/2‑150 (MQ=255) tG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGt > 2:1666451/1‑150 (MQ=255) tG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGt > 2:1666513/1‑150 (MQ=255) gggAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtca < 2:1992237/150‑1 (MQ=255) ggAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcat < 1:1732852/150‑1 (MQ=255) gAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatt > 2:772611/1‑150 (MQ=255) gAGGCAACGCCTCCCGCAACAAATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatt > 1:1015309/1‑150 (MQ=255) ggCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttc > 1:1918926/1‑150 (MQ=255) cAACGCCTCCCGCAACATATCTATTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGAGCTATAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttcat < 2:1387901/150‑1 (MQ=255) aCGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGCCCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTcatttcattt < 1:839982/150‑1 (MQ=255) cGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCatttcatttc < 2:449397/150‑1 (MQ=255) | ATTGTTTACTAAAAATTATTAAAAATGGGGCGTTGAGACGCCCCCAAAAATAAAGGGTAATATATAACAGAAGGTTTATATAGTTAGAAGCAAGGTTGTGCTTCTAAAGGAAGTGGCTTGAGGGAGCCACTTATATGTTG‑GGGAGGCAACGCCTCCCGCAACATATCTTTTTCGTAATCAGATTAGAACTGGTAAACCAGACCTACAGCAACGATGTCATCAGTGCTTACACCGAGTGCTTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTC > NC_000913/574347‑574645 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |