| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,964,035 | T→G | 6.3% | K339T (AAA→ACA) | flhA ← | putative flagellar export pore protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,964,035 | 0 | T | G | 6.3% | 898.0 / 11.1 | 322 | K339T (AAA→ACA) | flhA | putative flagellar export pore protein |
| Reads supporting (aligned to +/- strand): ref base T (146/148); new base G (2/26); total (148/174) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.28e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 328 total aligned reads displayed.
TGCGTATACGGCCCAACAACTCACCATCCTGCTGGAAATCGACCATCGGGATCAGTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCAGGCACCAGGCCGAGTAAACCGAGCACGGCGGCGCTTAACAACATAACGC > NC_000913/1963886‑1964182 | gCGTATACGGCCCAACAACTCACCATCCTGCTGGAAATCGACCATCGGGATCAGTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGttt < 1:4722618/150‑1 (MQ=255) gTATACGGCCCAACAACTCACCATCCTGCTGGAAATCGACCATCGGGATCAGTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTgg > 1:1046052/1‑150 (MQ=255) ataCGGCCCAACAACTCACCATCCTGCTGGAAATCGACCATCGGGATCAGTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGt > 1:3536641/1‑150 (MQ=255) aCGGCCCAACAACTCACCATCCTGCTGGAAATCGACCATCGGGATCAGTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTc < 1:4117700/150‑1 (MQ=255) ggCCCAACAACTCACCATCCTGCTGGAAATCGACCATCGGGATCAGTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCgg < 2:1952323/150‑1 (MQ=255) ggCCCAACAACTCACCATCCTGCTGGAAATCGACCATCGGGATCAGTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCgg < 1:620027/150‑1 (MQ=255) cccAACAACTCACCATCCTGCTGGAAATCGACCATCGGGATCAGTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCa > 1:250181/1‑150 (MQ=255) cccAACAACTCACCATCCTGCTGGAAATCGACCATCGGGATCAGTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCa > 1:2838620/1‑150 (MQ=255) cccAACAACTCACCATCCTGCTGGAAATCGACCATCGGGATCAGTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCa > 1:3277259/1‑150 (MQ=255) cccAACAACTCACCATCCTGCTGGAAATCGACCATCGGGATCAGTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCa > 1:189039/1‑150 (MQ=255) cccAACAACTCACCATCCTGCTGGAAATCGACCATCGGGATCAGTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCa > 1:392508/1‑150 (MQ=255) ccAACAACTCACCATCCTGCTGGAAATCGACCATCGGGATCAGTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCCGCCA‑TTTTTACCGGTTTGGGTTCGGCAg < 1:3650967/150‑1 (MQ=255) ccAACAACTCACCATCCTGCTGGAAATCGACCATCGGGATCAGTCGATAACCCACTTCCATTCCCAGAGAATCTTCAAGTTGTACATCGTTCCACGTCTCTTCGACAACGGTATTATTCTCTTCCA‑TTTTTACCGGTTTGGGTTCGGCAg < 1:709880/150‑1 (MQ=255) aacaacTCACCATCCTGCTGGAAATCGACCATCGGGATCAGTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGgc < 1:2078078/150‑1 (MQ=255) acaacTCACCATCCTGCTGGAAATCGACCATCGGGATCAGTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TCTTTACCGGTTTGGGTTCGGCAGgcg < 2:1826362/150‑1 (MQ=255) aacTCACCATCCTGCTGGAAATCGACCATCGGGATCAGTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCt > 1:2788815/1‑150 (MQ=255) acTCACCATCCTGCTGGAAATCGACCATCGGGATCAGTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCtt > 2:653676/1‑150 (MQ=255) cTCACCATCCTGCTGGAAATCGACCATCGGGATCAGTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCttt < 2:2995515/150‑1 (MQ=255) tCACCATCCTGCTGGAAATCGACCATCGGGATCAGTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCtttt > 2:4696048/1‑150 (MQ=255) cACCATCCTGCTGGAAATCGACCATCGGGATCAGTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCttttt < 2:2316274/150‑1 (MQ=255) aCCATCCTGCTGGAAATCGACCATCGGGATCAGTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTg > 1:3487465/1‑150 (MQ=255) aCCATCCTGCTGGAAATCGACCATCGGGATCAGTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTg > 2:2582935/1‑150 (MQ=255) cATCCTGCTGGAAATCGACCATCGGGATCAGTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGtt > 1:3396371/1‑150 (MQ=255) cATCCTGCTGGAAATCGACCATCGGGATCAGTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTGGTACATCGTTCCACGTCGCGTCGACAACGGTATTATTCTCTGCCA‑TGTTTACCGGTTTGGGTTCGGCAGGCGCtgtttgtt > 2:1280281/1‑150 (MQ=255) aTCCTGCTGGAAATCGACCATCGGGATCAGTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTc < 1:4218317/150‑1 (MQ=255) aTCCTGCTGGAAATCGACCATCGGGATCAGTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTc < 1:1654748/150‑1 (MQ=255) aTCCTGCTGGAAATCGACCATCGGGATCAGTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTGGGGTTCGGCAGGCGCTTTTTGTTc < 2:2658631/150‑1 (MQ=255) ctgctgGAAATCGACCATCGGGATCAGTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTcgcg < 1:4039604/150‑1 (MQ=255) tgctgGAAATCGACCATCGGGATCAGTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGt > 1:4705650/1‑150 (MQ=255) ctgGAAATCGACCATCGGGATCAGTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTcc > 2:4363802/1‑150 (MQ=255) aaTCGACCATCGGGATCAGTCGATAACCCACTTCCGTTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTa < 1:1422765/150‑1 (MQ=255) aaTCGACCATCGGGATCAGTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTa < 1:3561421/150‑1 (MQ=255) cGACCATCGGGATCAGTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATcc > 1:911456/1‑150 (MQ=255) gACCATCGGGATCAGTCGATAACCCACTTCCAGTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCC‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATcca < 2:3111110/150‑1 (MQ=255) ccATCGGGATCAGTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATccacc > 1:4763766/1‑150 (MQ=255) ccATCGGGATCAGTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATccacc > 2:3495293/1‑150 (MQ=255) aTCGGGATCAGTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAg < 1:1296958/150‑1 (MQ=255) cGGGATCAGTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGc < 2:1209643/150‑1 (MQ=255) aTCAGTCGATATCCCACTTCCATTCCCAGAGAATGTTCGAGTTGTACTTGGTTCCTCGTCGATTCGTCTACGGTATTTTTCTGTGCCT‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCAGGAGGCCAGc < 2:562953/150‑1 (MQ=255) aGTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCg > 1:3363948/1‑150 (MQ=255) gTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGa < 1:2397784/150‑1 (MQ=255) gTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGa < 1:2688608/150‑1 (MQ=255) gTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCATATCCACCAGGCCAGCCCGa < 2:1106285/150‑1 (MQ=255) gTCGATAACCCACGTCCAGTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTGGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCGGGCCAGCCCGa < 1:3085843/150‑1 (MQ=255) tCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCCGGCCAGCCCGAg > 1:1014681/1‑150 (MQ=255) tCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACAGGTTTGGGTTCGGCAGGCGCTTTTTTTTCGCGTCCGCGTATCAAACAGGCCATCACGAg > 2:1493941/1‑150 (MQ=255) aaCCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATc < 2:3670046/150‑1 (MQ=255) ccACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCgg < 2:742163/150‑1 (MQ=255) aaaCTACCATTCCCAGAGAATCTTACAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATACTCTGCCA‑ATTTAACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCgg > 1:4561219/3‑150 (MQ=255) ttCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACa < 1:1190756/150‑1 (MQ=255) ccAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCACTCCGGCAGTGAACAGCa > 1:4198701/1‑150 (MQ=255) ccAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAAc < 1:3102794/146‑1 (MQ=255) ccAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCa > 1:588522/1‑150 (MQ=255) cAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCaa > 1:3598465/1‑150 (MQ=255) aaTCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATa > 1:951648/1‑150 (MQ=255) aTCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTGTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATAc < 2:1409871/150‑1 (MQ=255) ttCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAg > 1:2005959/1‑150 (MQ=255) aGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTc > 1:3810539/1‑150 (MQ=255) gTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCg < 1:2085556/150‑1 (MQ=255) gTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTGTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCg < 1:1711079/150‑1 (MQ=255) ttGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCgg < 2:4456621/150‑1 (MQ=255) ttGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCgg < 1:4404974/150‑1 (MQ=255) ttGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCgg > 2:1032953/1‑150 (MQ=255) aTCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCCTTcc > 2:4607373/1‑150 (MQ=255) tCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCa < 1:3015254/150‑1 (MQ=255) cGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCAg < 2:189039/150‑1 (MQ=255) gTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCAgg < 1:1130847/150‑1 (MQ=255) ttCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTTTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCCGTGAACAGCAAAAATAACAGGTTCGGCATTCCACGc > 1:4517106/1‑150 (MQ=255) ttCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCAGGc > 2:1644213/1‑150 (MQ=255) ttCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTAGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAAACCGGCCGTGAACAGCAAAAATAACAGGTTCGGCATTACAGGc > 1:1680757/1‑150 (MQ=255) tCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCAGGCa < 1:1814002/150‑1 (MQ=255) cACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCACTCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCAATCCAGGCAcc > 1:2753240/1‑150 (MQ=255) aCGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCAGGCACCa < 2:2692762/150‑1 (MQ=255) aCGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAAAACCAGGTTCGGCATTCCAGGCACCa > 1:2477844/1‑150 (MQ=255) cGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCAGGCACCAg > 2:3751461/1‑150 (MQ=255) cGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCAGGCACCAg < 1:4581056/150‑1 (MQ=255) cGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTGTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCAGGCACCAg < 2:3245619/150‑1 (MQ=255) cGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTGTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCAGGCACCAg < 2:4060448/150‑1 (MQ=255) cTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCTATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCAGGCACCAGGCCGa < 1:2434361/150‑1 (MQ=255) cTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCAGGCACCAGGCCGa < 1:3226176/150‑1 (MQ=255) cTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCAGGCACCAGGCCGa < 2:3430359/150‑1 (MQ=255) cTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTGTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCAGGCACCAGGCCGa < 2:2482881/150‑1 (MQ=255) cTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTGGGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCAGGCACCAGGCCGa < 2:3392409/150‑1 (MQ=255) ttCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTGTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCAGGCACCAGGCCGAg < 2:2099932/150‑1 (MQ=255) aaCGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCAGGCACCAGGCCGAGTAAAcc > 2:2874899/1‑150 (MQ=255) ggTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCAGGCACCAGGCCGAGTAAACCGAg > 2:1133071/1‑150 (MQ=255) ggTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCAGGCACCAGGCCGAGTAAACCGAg > 2:2600984/1‑150 (MQ=255) tattatTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCAGGCACCAGGCCGAGTAAACCGAGCa > 1:4432441/1‑150 (MQ=255) tattatTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCAGGCACCAGGCCGAGTAAACCGAGCa > 2:1001608/1‑150 (MQ=255) ttattCTCTGCCATTTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCAGGCACCAGGCCGAGTAAACCGAGCAc < 1:1338544/150‑1 (MQ=255) tctGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCAGGCACCAGGCCGAGTAAACCGAGCACGgcggcg > 2:842219/1‑150 (MQ=255) tGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCAGGCACCAGGCCGAGTAAACCGAGCACGGCGGCGCt > 2:358281/1‑150 (MQ=255) a‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCGGTGAACAGCAAAAATACCAGGTTCGGCATTCCAGGCACCAGGCCGAGTAAACCGAGCACGGCGGCGCTTaac < 2:2810080/150‑1 (MQ=255) tttACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCAGGCACCAGGCCGAGTAAACCGAGCACGGCGGCGCTTaacaac < 1:3852727/150‑1 (MQ=255) ttACCGGTTTGGGTTCGGCAGGCGCTTTTGGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCAGGCACCAGGCCGAGTAAACCGAGCACGGCGGCGCTTAacatca < 1:1240075/150‑1 (MQ=255) tACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCAGGCACCAGGCCGAGTAAACCGAGCACGGCGGCGCTTAACAACAt < 1:1757108/150‑1 (MQ=255) aCCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCAGGCACCAGGCCGAGTAAACCGAGCACGGCGGCGCTTAACAACATa < 1:1493941/150‑1 (MQ=255) ccGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCAGGCACCAGGCCGAGTAAACCGAGCACGGCGGCGCTTAACAACATaa > 2:2162189/1‑150 (MQ=255) cGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCAGGCACCAGGCCGAGTAAACCGAGCACGGCGGCGCTTAACAACATAAc < 1:4363802/150‑1 (MQ=255) gTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCAGGCACCAGGCCGAGTAAACCGAGCACGGCGGCGCTTAACAACATAACGc > 2:4803757/1‑150 (MQ=255) | TGCGTATACGGCCCAACAACTCACCATCCTGCTGGAAATCGACCATCGGGATCAGTCGATAACCCACTTCCATTCCCAGAGAATCTTCCAGTTGTACATCGTTCCACGTCGCTTCGACAACGGTATTATTCTCTGCCA‑TTTTTACCGGTTTGGGTTCGGCAGGCGCTTTTTGTTCGCGTCCGCGTATCCACCAGGCCAGCCCGAGCAATCCGGCAGTGAACAGCAAAAATACCAGGTTCGGCATTCCAGGCACCAGGCCGAGTAAACCGAGCACGGCGGCGCTTAACAACATAACGC > NC_000913/1963886‑1964182 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |