| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 164,581 | A→C | 20.4% | intergenic (+47/‑149) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 164,581 | 0 | A | C | 20.4% | 302.0 / 43.5 | 211 | intergenic (+47/‑149) | hrpB/mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| Reads supporting (aligned to +/- strand): ref base A (69/96); new base C (4/42); total (73/138) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.59e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 213 total aligned reads displayed.
CCGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCA > NC_000913/164432‑164730 | ccGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCa > 1:5094194/1‑150 (MQ=255) cGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCAt > 1:1594318/1‑150 (MQ=255) cGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCAt > 1:705044/1‑150 (MQ=255) cGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCAt > 2:8362832/1‑150 (MQ=255) cGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCAt > 1:7046509/1‑150 (MQ=255) gTGAGGTGAAAAATGAGATGAAAGGGCGTTATCCCAACCATGTCTGGCCGGACGAGCCGGAAAATACTGCACCGACGCGACGGACTAAAAAGTATTCTTAAGGTT‑GGTTTTGTCGTTCTCCGTTTGGGAGTGGGCCGGGGTGAGGGCATc < 2:8632139/150‑1 (MQ=255) tGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCa > 2:2567434/1‑150 (MQ=255) tGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCa > 2:9183101/1‑150 (MQ=255) tGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCa > 1:525791/1‑150 (MQ=255) tGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCa > 1:4377614/1‑150 (MQ=255) ggTGCAAAAAGAGTTGAAGGGGGTTTAGCCAAAACTTGTCTGGCCGGCCGACCCGGAAATTCTTGCACCGACGCGACGGACGAAAATGTTTTGGTTAGTTT‑GTTTTTCTCCGACTCCCTGTGGGTGAGGGCCGGGGTTTGGGCATCAgcg < 2:7687270/150‑1 (MQ=255) gTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAgcgc > 2:498844/1‑150 (MQ=255) tgaaaaaaGAGATGAACGGGCGTTATCCCAAACCTGTCTGGCCGGACGACCGGGCAAATACTGCACCGACGCGACGGACGAAAATGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGTGGGCCGGGGTGAGGGCATCAgcgcg < 2:1361906/147‑1 (MQ=38) agagATGAAAGGGCGTTATCCCAAACTTGTCTGGCCGGACGACCGGGCAAATACTGCACCGACGCGACGGACGAAAATGTTTTCTTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTtc < 2:4538650/150‑1 (MQ=38) agagATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTGAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGCGGGCCTCAGCGCGCACGtgg > 1:6419694/1‑148 (MQ=255) agagATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACgggc > 1:6927201/1‑147 (MQ=255) acagaTGAACGGGCGTTATCCCAAACATGTCTGGCCGGACGCCCCGGCAACCACTGCACCGCCGCGACGGACGAAAAATTATTCGTCTGGTT‑GGTTTTCTCCCTCGCCCGGTGGGAGTGGGCGGGGGTGTGGGCATCAGCGCGCACGTtc < 2:7355752/148‑1 (MQ=255) gaTGAACGGGGTTTATCCCAAACATGTGTGGCCGGACCCCCCGGAAAATACTGCCCCGACGCGACGGACGAAAAATTATTCTTAAGGTG‑GTTTTTCTCCCTCTCCCTGTGGGTGTGGGCGGGGGTTAGGGCATCAGCGCGCACGTtcacc < 2:1748666/150‑1 (MQ=25) gaTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGGgcacc > 1:7950076/1‑150 (MQ=255) aTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTgccccc > 2:4515347/1‑150 (MQ=255) aaaGGGCGTTATCCCAAACAGGTCTGGCCGGACGACCCGGCAAATACGGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTtcaccctca < 2:9342182/150‑1 (MQ=255) tgggCTTTATCCCAAACTTGTCTGGCCGGACGACCCGGAAAATACTGCACCGACGCGCGGTACTAAAATTTTTTCTTATGGTT‑GTTTTTCTCCCTCTCCGTGTGGTTGTGGGCGGGGGTGAGGGCATCAGCGCGCACGTtcaccctcacc < 2:2079031/149‑1 (MQ=255) aGGGCGTTATCCCACCCATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTT‑GGTTTTCACCCTCTCCCTGTGGGTGAGGGCGGGGGTGAGGGCATCAGCGCGCACGTtcaccctcacc < 2:6224425/150‑1 (MQ=39) gggCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTggccccacaccc > 1:478433/1‑150 (MQ=255) gTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGGATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGCGGGGAGGGCATCAGCGCGCACGTggaccccccccccaca > 2:7861828/1‑146 (MQ=38) aacccAAACTTGTGGGGCCGGACGACCGGGAAAATACGGCCCCGACGCCACGGACTAAAATGTTTTCGTATGGTT‑GGTTTTCCCCCTCGCCGTGGGGGAGCGGGCCGGGTTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCct < 2:8896863/148‑1 (MQ=255) cccAAACATGTCTGGCCGTACGACCCGGCAAATACTGCACCGACGCGACGGACTAAAAATTATTCGTACGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGTGGGCCGGGTTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCctc‑t < 2:4315230/150‑1 (MQ=38) cccAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGACCCGCACCCAAAaccaca > 1:3524129/1‑147 (MQ=38) ccAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACACCCGAAcccacac > 1:4984999/1‑146 (MQ=255) ccAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCACCCACACCCCAAcccacac > 1:3357763/1‑146 (MQ=255) cAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGGGCACCCCCCCCCCCAcccacccc > 1:8868720/1‑145 (MQ=37) cAAACATGTCTGCCCGCACGACCCGGCAAAAACTGCACCGACGCGACGGACGAAAACGTATCCCTACGTTT‑GGTTTTCTCCCCCCCCCTGTGGTTGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑Tcc < 2:3376841/150‑1 (MQ=255) ttttCTGGCCGCACGCCCGGCCAAATACTGCCCCGACGCGCGGGACTAAAATTTTTTCTTATGTTT‑GGTTTTCTCCCTCCCCGTGTGGTCGTGGGCGGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCaa < 1:8320468/147‑1 (MQ=255) ttgtggggCCGCACGACCCGCAAAATAGTGCCCCGCGGGGCGGGACTAAAATTTTTTCTTTTGTTT‑GTTTTTCCCCCTCTCCGTGTGGGTGTGGGGGGGGTTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCaa < 2:2529311/144‑1 (MQ=255) tGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCACCCGCACCCAAACCCGC‑TCCCTCCAg > 1:7705937/1‑150 (MQ=38) gTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAATTATTCGTATGGTT‑GGTTTTCTCCCTCTCCCTGTGGGTGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAgg < 2:5873264/150‑1 (MQ=255) ggccggccGCCCCGGCAAATACGGCACCGACGCGCCGGACGAAAAAGTATTCGTACGTTT‑GGTTTTCCCCCACTCCCTGTGGTAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTTGAGGgaga < 2:5745192/150‑1 (MQ=37) ggCCGCACTACCGGCAAAATACGGCACCGACGCGAGGTACTAAAATTTTTTCTTACGGTT‑GTTTTACTCCCTCCCCCTTTGGGTTTGGGCCGGGGTGTGGGCCTCAGCGCGCACGTTCACCCCCACCCTAACCCTC‑TCCCTCAAGGgaga < 1:3122354/150‑1 (MQ=255) gCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTAGTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGACCCGCCCCCGAAACCAC‑TCCCTCAAggggggg > 1:3856213/1‑146 (MQ=37) gggACGACCCGGAAAATACTTCACCTACGCGACGTACGAAAAATTATTGTTATGTTT‑GTTTTTAACCCTCTCCCTGTGGGATCGGGCGGGGGGCAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAggg < 2:2951417/149‑1 (MQ=255) cgtacgacCCGGCAAATACTGCACCGAGGCGACGTACTAAAAATTATTCGTATGGTT‑GGTTTTCTCCCTCTCCCTGGGGGTGTGGGCGGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAggg < 1:8475060/147‑1 (MQ=255) ggACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTGGCCCCCACCCAAAACCAA‑ACCCACAAGGGGGCgggg > 1:583176/1‑150 (MQ=25) ggACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGGGGGCCCACCCCCAAAACCAC‑AACCACAAGGGAGAgggg > 1:541593/1‑150 (MQ=25) ccgacCCGGCAACAACGGCCCCGACGCGCCGGCCGAACAAGTTTTCGTACGGTT‑GGTTTTCCCCCTCTCCCTGGGGGAGCGGGCCGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAgggtta < 2:8325345/149‑4 (MQ=255) ccgacCCGGCAAACACTGCACCGACGCGACGGACGAAAATGTATTCGTACGGTT‑GTTTTTCTCCCTCCCCGTGTGGGAGCGGGCCGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTTGAGGGAGAgggtta < 2:4468551/149‑4 (MQ=255) accacCCGGAAAACAGTGCACCGACGCGACGGACTAAAAAGTTTTCGTTTGGTT‑GTTTTTCTCCCTCTCCCTGTGGTAGCGGGCGGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGAc < 2:6614360/147‑1 (MQ=255) cacCCGCAAAATACCCCCCCGCCGCGCGGGACTAAAATGTATTCGTTCGGTG‑GGTTTTCCCCGTCTCCCTGTGGTTGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTTGAGGGAGAgggttagg < 1:5214362/149‑6 (MQ=255) cGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTGCCCCCCACCCAAAACCAC‑AACCACAAGGGCGAGGGGGCCGATCg > 2:1545603/1‑150 (MQ=25) cGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGCCCCACACCCAAAACCGC‑ACCCACCAGGGGGGGGGGGCCgcggg > 1:7636546/1‑146 (MQ=25) cTGCCCCGACGCGCCGGACGAAAAAGTATTCGTACGGTT‑GGTTGTCTCCCACTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAAt < 2:7718288/150‑1 (MQ=39) cTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGGGGCCCCGCACCCGAACCCAC‑ACCCACCAGGGCGGGGGGGCCCAGCGAGcccccaa > 1:4533980/1‑144 (MQ=21) cTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCCCGGTCACCCTCACCCGAAACCAC‑TCCCACAAGGGGGAGGGGACCGATCGAGCACACAt > 2:6896208/1‑150 (MQ=37) ccccGACGCGACGGACTAAAATGTTTTCGTATGGTT‑GTTTTTCTCCCTCTCCGGGTGGTTGTGGGCGGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAAtttt < 1:3937985/148‑1 (MQ=255) cccgccgCGCCGTCCGAAAAATTTTTTTTATGGTT‑GGTTTTCGCCCTCTGCGGGTGGGTGTGGGCGGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTg < 1:9327842/149‑1 (MQ=255) ccGACGCGCCGGACGACAACTTTTTGGTATGTTT‑GTTTTTCTCCCTCTCCGGGTGGTCGTGGGCGGGGGTGTGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTga < 2:1864697/150‑1 (MQ=255) ccGACGCGACGTACTAAAATTTATTCTTATGTTT‑GGTTTTCTCCCTCTCCCTGTGGGTGTGGGCCGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTga < 2:5512765/150‑1 (MQ=37) cgacgcgacgGACGAAAAAGTTTTCGTATGGTT‑GTTTTTCTCCCTCTCCGTGTGGGTGAGGGCCGGGTTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTgag < 2:6527032/150‑1 (MQ=255) ccgcgacgGACGAAAATGTTTTCTTTTGGTT‑GTTTTTCTCCCTCTCCCTGTGGTAGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTgagag < 2:5174296/149‑1 (MQ=38) acgcacgAAAAAGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACCTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAtc < 1:9070010/150‑1 (MQ=255) gacgAAAAAGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTGGCCCACACCCCAAACCAC‑ACACACAAGGGGGGGGGGGCCGCTCGAGCCCCAAAATTTAGAGataaaaaa > 1:4680921/1‑145 (MQ=16) cgAAAAAGTTTGCGTATGGTT‑GGTTTTCTCCCTCTCCGGGTGGGAGCGGGCCGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAtcttctt < 1:5983761/150‑1 (MQ=255) cgAAAAAGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAtcttctt < 2:9187416/150‑1 (MQ=255) aaaaaGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTGACCCACACCCAAAACCAC‑ACCCACAACGGGGAGGGGACCCATCCAGCACAAAATTTTATAGATAtcttaataa > 2:4679162/1‑145 (MQ=21) aatgttttCGTATGTTT‑GGTTTTCTCCCTCTCCCTGTGGGTGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGt < 1:9183158/144‑1 (MQ=38) acgTATGCGTAGGGTG‑GGTTTTCGCCCGCCCCCTGTGGGAGCGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTc < 2:7507718/148‑1 (MQ=255) ttATTCGTATGGTT‑GGTTTTCTCCCTCTCCCTGTGGTTGTGGGCGGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCtt < 2:3697747/149‑1 (MQ=255) gTATTCGTATGGTT‑GGTTTTCTCCCTCTCCGTGTGGGAGAGGGCCGGGTTGAGGGCCTCCGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCtt < 1:533878/150‑1 (MQ=255) gTATTCGTATGGTG‑GGTTTTCTCCCTCTCCCTGTGGGAGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCtt < 1:6661782/150‑1 (MQ=255) tcggaGGTTGGGTTTGCCCCCCCCCCCGGGGGGTGGGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTaa < 1:8173030/146‑1 (MQ=255) aaGGTT‑GGTTGTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACaga < 2:5317733/150‑1 (MQ=255) tgttt‑gtttTACCCCCTGGCCGTGGGGGAGGGGGGGGGGGTGGGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACagaa < 1:2567434/147‑1 (MQ=255) gttt‑ggttTTCTCCCTCTCCGTGTGGGTGAGGGCGGGGTTGAGGCCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACagaag < 1:4803143/148‑1 (MQ=255) gtt‑ggttTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGGTCACCCTCACCCAAAACCAC‑TACCACAACGGAGAGGGGACCCATCAAGCCCAAATTTTTAGAGATTAATTATTCAGTGTTGTCACaaaaga > 2:8252827/1‑150 (MQ=18) gtt‑ggttTTCTCCCTCGCCCTGTGGGAGAGGGCCGGGGGGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACagaaga < 2:1129164/150‑1 (MQ=255) ttccgccctctccgtGTGGGAGTGGGCGGGGGTGAGGCCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGaa < 2:7302301/145‑1 (MQ=255) tctccctgtccgTGTGGGATAGGGCGGGGTTGGGGGCCTCAGCGCGCACGTTCACCCTCTCCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGaaaa < 2:3582767/150‑1 (MQ=255) tctccctctcccTGTGGGTGAGGGCGGGGTTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGaaaa < 1:1545603/150‑1 (MQ=255) tcgccctctcccgGGGGGAGAGGGCCGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGaaaa < 1:977176/147‑1 (MQ=255) ccctccccgtGTGGGCGAGGGCGGGGGTGGGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCg < 1:3303700/150‑1 (MQ=255) cgtctccctGTGGGAGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCgg < 2:8498723/148‑1 (MQ=255) cctGGGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCtttt < 2:4534737/150‑1 (MQ=255) ggtgggggCGGGGGGGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCt < 1:3219750/145‑1 (MQ=255) ggAGTGGGCGGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCt < 1:1896138/150‑1 (MQ=255) ggAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCt < 1:1069103/150‑1 (MQ=255) ggAGAGGGCCGGGGTGAGGCCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCt < 2:901485/150‑1 (MQ=255) gagaGGGCCGGGGTGAGGGCATCAGCGCGCACGTTGAACCCCAACCAAAACCACAACCCCCAAGGG‑GAGGGGGCCCAAAGAGCACAAAAATTTAGAGATATAATAATATGTCGTTTAAAAAAAGAACAAAAAAAAGGGCgttttggccgg > 2:1401003/1‑143 (MQ=255) ggCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCGCACCCAAACCCAC‑ACCCACAACGGAGAGGGGCCCGATAGAGCACAAAATTTTAGGGAAAAATTATTATGTCTTGTTAAAGAAGAACAGAAAAAAGGGCTTTTTCGCCGGAatat > 2:6098366/1‑150 (MQ=255) cGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGc < 1:29507/150‑1 (MQ=255) ggggggggggCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCg < 2:3292240/150‑1 (MQ=255) ggggTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCg < 1:8362832/150‑1 (MQ=255) ggggTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCg < 2:694673/150‑1 (MQ=255) ggggTGAGGGCATCAGCGCGCCCGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCg < 2:1041365/150‑1 (MQ=255) ggggTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCg < 2:5835836/150‑1 (MQ=255) ggTGCGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGga < 2:4028380/150‑1 (MQ=255) aGGGCATCAGCGCGCACGTTGACCCACAACCGAAACCAC‑ACCCACAAAGGGGAGGGGACCCAACGAGCACAAAATTTTAGAGATAAAATAATAAGTCTTTTTACAAAAAAAAAGAAAAAACGGCGTTTTCGCCGGAATAATTCGGGGaaa > 2:3802493/1‑150 (MQ=255) gggCCTCAGCGCGCCCGTTCACCCTCACCCTAACCCTC‑TCCCTCAATGGAGAGGGGACCGATCGAGCACATATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGaaaa < 1:2508510/150‑1 (MQ=255) ggCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGaaaaa < 1:3009625/150‑1 (MQ=255) gCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAg < 2:806771/150‑1 (MQ=255) gCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAg < 1:229463/150‑1 (MQ=255) aTCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCa < 2:3037034/150‑1 (MQ=255) | CCGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCA > NC_000913/164432‑164730 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |