| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 164,613 | T→A | 11.2% | intergenic (+79/‑117) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 164,613 | 0 | T | A | 11.2% | 714.6 / 16.1 | 234 | intergenic (+79/‑117) | hrpB/mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| Reads supporting (aligned to +/- strand): ref base T (38/161); new base A (29/2); total (71/163) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.42e-16 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 253 total aligned reads displayed.
TCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAATTGGACGC > NC_000913/164465‑164762 | cccAAACATGTCTGGCCGTACGACCCGGCAAATACTGCACCGACGCGACGGACTAAAAATTATTCGTACGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGTGGGCCGGGTTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCctc‑t < 2:4315230/150‑1 (MQ=38) cAAACATGTCTGCCCGCACGACCCGGCAAAAACTGCACCGACGCGACGGACGAAAACGTATCCCTACGTTT‑GGTTTTCTCCCCCCCCCTGTGGTTGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑Tcc < 2:3376841/150‑1 (MQ=255) aaCTTGTCGGGCCGGACGACCGGGAAAATAGTGCACCGACGCGACGTACTAAAATTTATTCTTATGTTT‑GTTTTTCTCCCTCTCCCTGTGGGTGTGGGCGGGGTTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCt < 2:2897542/150‑1 (MQ=255) aaCGTGTGTGGCGGGACGACCGGGCAAATCCGGCACGGACGCGACGGACTAAAATGTTTTCTTCTGGTT‑GGTTTTCTCCCTCTCGGTGTGGTTGTGGGCGGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCt < 2:6555474/150‑1 (MQ=255) aCATGTCTGGCCGGACGACCCGGAAAATCCTGCACCGCCGCGACGGACGAAAAAGTATTCGTACGGTT‑GGTTTTCCCCCTCTCCCTGGGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTc < 1:8351824/150‑1 (MQ=255) tGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCACCCGCACCCAAACCCGC‑TCCCTCCAg > 1:7705937/1‑150 (MQ=38) gTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAATTATTCGTATGGTT‑GGTTTTCTCCCTCTCCCTGTGGGTGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAgg < 2:5873264/150‑1 (MQ=255) tGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCACGTGGACCCGCACCCAAAACCAC‑ACCCACAAggggg > 1:3901739/1‑148 (MQ=37) ggCCGGACGCCCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATACGTACGGTT‑GGTTTTCTCCCTCTCCCTGTGGGATAGGGCCGGGGTGTGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTTGAGGgaga < 2:3761441/150‑1 (MQ=38) gCCGGACGACCCGCCAAATACTGCACCGACGCGACGGACGAAAAATTATTCGTATGGTT‑GTTTTTCTCCCCCTCCCTGTGGTAGTGGGCGGGGTTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGagag < 2:7265758/150‑1 (MQ=255) gCCGGACCACCCCAAAAATACTGCACCGACGGGACGGACGAAAATTTTTTCGTATGGTT‑GTTTTCCTCCCTCTCCGTGTGGGTGTGGGCGGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGagag < 1:6675425/150‑1 (MQ=255) ggACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGGGGGCCCACCCCCAAAACCAC‑AACCACAAGGGAGAgggg > 1:541593/1‑150 (MQ=25) gccgacCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTACGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGa < 2:2248187/148‑1 (MQ=255) cacCCGCAAAATACCCCCCCGCCGCGCGGGACTAAAATGTATTCGTTCGGTG‑GGTTTTCCCCGTCTCCCTGTGGTTGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTTGAGGGAGAgggttagg < 1:5214362/149‑6 (MQ=255) cgggCAAATACGCCCCCGACGCGACGGACTAAAAAGTTTTCGTACGGTT‑GGTTTTCTCCCTCTCCCTGGGGGAGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATc < 2:3683446/148‑1 (MQ=38) cAAATACGGCACCGCCGCGCCGGCCGAAAATGTATTCGTAAGGTG‑GGTTTTCGCCCTCTCCCGGTGGGAGTGGGCCGGGGTGCGGGCATCAGCGCGCACGGTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGc < 2:7636513/150‑1 (MQ=255) aaaTACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGACCCCCCACCGAAACCCC‑ACCCGCAAGGGGGAGGGGGCCGATCGAGca > 2:5307036/1‑150 (MQ=25) cggCACCGCCGCGCCGGACGAACAAGTATTCGAACGGTT‑GGTTTTCGCCCTCGCCCTGTGGGAGAGGGCCGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAAt < 2:7719300/148‑1 (MQ=255) cTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGGGGCCCCGCACCCGAACCCAC‑ACCCACCAGGGCGGGGGGGCCCAGCGAGcccccaa > 1:4533980/1‑144 (MQ=21) cACCGACGCGACGGACGAAAATGTTTTCGTCAGGTT‑GGTTTTCCCCCTCTCCCTGTGGGAGCGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAAtttt < 1:3793706/150‑1 (MQ=255) cccgccgCGCCGTCCGAAAAATTTTTTTTATGGTT‑GGTTTTCGCCCTCTGCGGGTGGGTGTGGGCGGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTg < 1:9327842/149‑1 (MQ=255) ccGACGCGCCGGACGACAACTTTTTGGTATGTTT‑GTTTTTCTCCCTCTCCGGGTGGTCGTGGGCGGGGGTGTGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTga < 2:1864697/150‑1 (MQ=255) ccGACGCGACGTACTAAAAATTTTTCGTATGGTT‑GTTTTTCCCCCTCTCCGTGTGGTCGCGGGCGGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTga < 1:3087090/150‑1 (MQ=255) ccgcgacgGACGAAAATGTTTTCTTTTGGTT‑GTTTTTCTCCCTCTCCCTGTGGTAGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTgagag < 2:5174296/149‑1 (MQ=38) gacgAAAAAGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTGGCCCACACCCCAAACCAC‑ACACACAAGGGGGGGGGGGCCGCTCGAGCCCCAAAATTTAGAGataaaaaa > 1:4680921/1‑145 (MQ=16) cgAAAAAGTTTGCGTATGGTT‑GGTTTTCTCCCTCTCCGGGTGGGAGCGGGCCGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAtcttctt < 1:5983761/150‑1 (MQ=255) aaaaaGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTGACCCACACCCAAAACCAC‑ACCCACAACGGGGAGGGGACCCATCCAGCACAAAATTTTATAGATAtcttaataa > 2:4679162/1‑145 (MQ=21) aatgttttCGTATGTTT‑GGTTTTCTCCCTCTCCCTGTGGGTGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGt < 1:9183158/144‑1 (MQ=38) ttATTCTTATGTTT‑GTTTTTCACCCTCTCCCTGTGGTTGTGGGCGGGGGTGCGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCtt < 1:903594/149‑1 (MQ=255) gTATTCGTATGGTT‑GGTTTTCTCCCTCTCCGTGTGGGAGAGGGCCGGGTTGAGGGCCTCCGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCtt < 1:533878/150‑1 (MQ=255) tcggaGGTTGGGTTTGCCCCCCCCCCCGGGGGGTGGGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTaa < 1:8173030/146‑1 (MQ=255) tgttt‑gtttTACCCCCTGGCCGTGGGGGAGGGGGGGGGGGTGGGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACagaa < 1:2567434/147‑1 (MQ=255) gtt‑ggttTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGGTCACCCTCACCCAAAACCAC‑TACCACAACGGAGAGGGGACCCATCAAGCCCAAATTTTTAGAGATTAATTATTCAGTGTTGTCACaaaaga > 2:8252827/1‑150 (MQ=18) gtt‑ggttTTCTCCCTCGCCCTGTGGGAGAGGGCCGGGGGGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACagaaga < 2:1129164/150‑1 (MQ=255) tt‑ggttTTCTCCCTCCCCCTGTGGGAGTGGGCCGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAgaagaa < 2:3901739/150‑1 (MQ=255) tt‑ggttTTCTCCCTCACCCTGTGGGAGAGGGGGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAGGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAgaagaa < 1:2979503/150‑1 (MQ=255) t‑ggttTTCTCCCACTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAAc < 1:7262536/150‑1 (MQ=255) gttTTCTCCCTCTCCCTGTGGGTGTGGGCGGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCTCAAATTTTGAGAGTTATCTTCTTCTGTCTTGTTACAGAAGATCAg < 1:2308437/150‑1 (MQ=255) tctccctctcccTGTGGGTGAGGGCGGGGTTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGaaaa < 1:1545603/150‑1 (MQ=255) tctccccctcccGGTGGGTGTGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGaaaa < 1:977301/150‑1 (MQ=255) tctccctGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGGGCACCCCCCCCCGAACCCAC‑ACCCACCAGGGGGGGGGGGCCCCTCGCGCCCAAATTTTGTGAGATATATTATTCGGTGTTGTAACACAAGAACAGAAAAAAGGGc > 2:8373620/1‑150 (MQ=16) cctGGGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCtttt < 2:4534737/150‑1 (MQ=255) gtggggggCGGGGGTGCGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCt < 1:3185960/145‑1 (MQ=255) ggtgggggCGGGGGGGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCt < 1:3219750/145‑1 (MQ=255) ggAGTGGGCGGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCt < 1:1896138/150‑1 (MQ=255) ggAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCt < 1:1069103/150‑1 (MQ=255) gagaGGGCCGGGGTGAGGGCATCAGCGCGCACGTTGAACCCCAACCAAAACCACAACCCCCAAGGG‑GAGGGGGCCCAAAGAGCACAAAAATTTAGAGATATAATAATATGTCGTTTAAAAAAAGAACAAAAAAAAGGGCgttttggccgg > 2:1401003/1‑143 (MQ=255) gCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCACACCCAAACCCAA‑TCCCGCAAGGGGGGGGGGACCCATCCAGCCCAAAATTTGAGAGAAAAAATCTTATGTCTTTTAACACAAGAACAGAAAATAGGGCTTTTTCGCCAGAataat > 2:7717035/1‑148 (MQ=255) cGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGc < 1:29507/150‑1 (MQ=255) ggggggggggCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCg < 2:3292240/150‑1 (MQ=255) ggggTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCg < 1:8362832/150‑1 (MQ=255) ggggTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCg < 2:694673/150‑1 (MQ=255) ggggTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCg < 2:6793614/150‑1 (MQ=255) ggggTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCg < 2:5835836/150‑1 (MQ=255) ggTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGga < 1:5239193/150‑1 (MQ=255) gggCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGaaaa < 2:9037056/150‑1 (MQ=255) gggCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGaaaa < 2:5025573/150‑1 (MQ=255) ggactCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGaaaaa < 2:8948418/146‑1 (MQ=255) cctCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGc < 1:3289124/148‑1 (MQ=255) ctCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCa < 2:300753/149‑1 (MQ=255) aTCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCa < 2:3037034/150‑1 (MQ=255) tCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCAt < 2:4474404/150‑1 (MQ=255) cgcACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCgg < 1:4130298/150‑1 (MQ=255) aCGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAGGCATGGCCGGGaa < 1:6493298/150‑1 (MQ=255) ttCACCCTCACCCGAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGGATCAGAAGAACAGAAACTCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGa < 2:4038731/150‑1 (MQ=255) caccctcaccctAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGAcc < 2:9261873/150‑1 (MQ=255) ctcaccctAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGa < 2:6396299/150‑1 (MQ=255) ctcaccctAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGa < 2:7448432/150‑1 (MQ=255) ctcaccctAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGa < 2:166487/150‑1 (MQ=255) ctcaccctAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAAGTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGa > 1:7512357/1‑150 (MQ=255) tcaccctAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAg > 2:2235569/1‑150 (MQ=255) tcaccctAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAg > 2:616667/1‑150 (MQ=255) accctAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGcc > 1:610335/1‑150 (MQ=255) accctAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGcc > 1:5525963/1‑150 (MQ=255) cctAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCaa > 1:3245372/1‑150 (MQ=255) cctAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCaa > 1:6745143/1‑150 (MQ=255) ctAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAAt < 2:5094194/150‑1 (MQ=255) ctAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAAt < 2:4968993/150‑1 (MQ=255) ctAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCAGGAATGACCGCGAGCCAAt > 1:8426405/1‑150 (MQ=255) tAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAAtt > 2:5423718/1‑150 (MQ=255) tccccTC‑TCCCTTGAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAATTg > 2:5585989/3‑150 (MQ=255) aaCCCTC‑TCCCTCCAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAATTg < 1:1823781/150‑1 (MQ=255) aaCCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAATTg > 2:2940834/1‑150 (MQ=255) cccTC‑TCCCTTGAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAATTgca > 1:4879972/1‑148 (MQ=255) cccTC‑TCCCTTGAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAATTGGa > 2:355900/1‑150 (MQ=255) cccTC‑TCCCTTGAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAG‑AAAAGCATGGCCGGGAATGACCGCGAGCCAATTGGAc > 1:6563137/1‑150 (MQ=255) cccTC‑TCCCTTGAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCAACTTATGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCCAATGGa > 1:4880309/1‑150 (MQ=255) cccTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAATTGGa > 1:7960019/1‑150 (MQ=255) cccTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCGTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAATTGGa < 1:8919834/150‑1 (MQ=255) cccTC‑TACATCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGACTATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAATTGGa < 2:8388119/150‑1 (MQ=255) ccTC‑TCCCTTGAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAATTGGAc > 2:8715333/1‑150 (MQ=255) ccTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAATTGGAc > 2:6006357/1‑150 (MQ=255) ccTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAATTGGAc < 2:8130761/150‑1 (MQ=255) ccTC‑TCCCGTGAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAATTGGAc > 1:8267062/1‑150 (MQ=255) ctc‑tCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAATTGGACg > 1:7123693/1‑150 (MQ=255) ctc‑tCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAATTGGACg > 1:5795774/1‑150 (MQ=255) tc‑tcCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAATTGGa > 2:8643849/1‑147 (MQ=255) tc‑tcCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAATTGGa < 1:8643849/147‑1 (MQ=255) tc‑tcCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAATTGGACGc > 1:3276552/1‑150 (MQ=255) tc‑tcCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAG‑AAAAGCATGGCCGGGAATGACCGCGAGCCAATTGGa < 2:5318967/146‑1 (MQ=255) | TCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTT‑GGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTC‑TCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCATGGCCGGGAATGACCGCGAGCCAATTGGACGC > NC_000913/164465‑164762 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |