| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,466,345 | T→C | 6.2% | pseudogene (954/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,466,345 | 0 | T | C | 6.2% | 257.4 / 3.8 | 97 | pseudogene (954/2513 nt) | ydbA | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| Reads supporting (aligned to +/- strand): ref base T (49/40); new base C (3/3); total (54/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGG > NC_000913/1466197‑1466494 | ccGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAATGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATg < 1:2039725/150‑1 (MQ=255) cGGTGACAGCTCGACGTTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGCAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATgg < 2:1837340/150‑1 (MQ=255) ggTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCAACCTCAATAACGAAGGCGAGAGCACCATCACCACCGCTGGCACCGGCACCCAGATTAATGGt > 2:874593/1‑150 (MQ=255) gTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGtg < 1:1626815/150‑1 (MQ=255) gTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGACAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGtg < 2:2040078/150‑1 (MQ=255) gACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGtga‑t > 2:1146517/1‑150 (MQ=255) cAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGtga‑tga > 2:695706/1‑150 (MQ=255) cAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCAATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGAACCAGCACCAACGGTGGCACCGGCACCCAGATTAATGGtga‑tga > 2:87488/1‑150 (MQ=255) aGCGCGACGGTGGATAACAAGGTCACCATGACCGTCACCGATCAGGATTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGG‑TGAc < 1:329877/150‑1 (MQ=255) aGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGAc < 2:73362/150‑1 (MQ=255) gcgcGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACg > 2:772461/1‑150 (MQ=255) gcgACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGcc > 1:1748073/1‑150 (MQ=255) aTAACAAGGGCACCATGACCGTCACCGGTCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAaac‑a < 1:1634790/150‑1 (MQ=255) aTAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCAGGGGTATCCAGAGCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAaac‑a < 1:1901554/150‑1 (MQ=255) aaCAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGCCGCCACGGCAaac‑aac > 1:1757154/1‑150 (MQ=255) aaCAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAaac‑aac > 2:570116/1‑150 (MQ=255) gggCACCATGACCGTCACCGATCCGGAGTCCATGCGTATCCAGATCGACGGTGACAAGGCCATCGGCAATAACGCAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACgg < 1:335649/150‑1 (MQ=255) gCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCa < 1:984178/150‑1 (MQ=255) gCACCATGACCGTCACCGATCCGGAGTCCAT‑GGTTTACACATATAAGGTGACAAGGCCATATTAAATAAAGAAGGCGACCGCACCATCCCCAAAGGTTGCCCCCGCACCCATATTAATGGTGATTCACCCCAC‑GCAAACAAACAACgcaa > 2:1972634/1‑147 (MQ=12) ccATGGCCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGACAGCACCATCACCAACTGTGGCACCGTCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCaaaa < 1:321140/150‑1 (MQ=255) tGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAaccc > 1:1976136/1‑149 (MQ=255) tGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAacca > 2:577961/1‑150 (MQ=255) ccGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCg < 1:1624479/150‑1 (MQ=255) tCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTg > 2:1347632/1‑150 (MQ=255) cACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCCAAC‑AACAACGGCAAAACCACCGTTGa > 1:861112/1‑150 (MQ=255) aCCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTgcc > 1:536533/1‑148 (MQ=255) ccGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACg < 2:1817879/150‑1 (MQ=255) ccGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACg > 1:1453077/1‑150 (MQ=255) cGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACgg > 2:237139/1‑150 (MQ=255) gATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGc > 1:898920/1‑150 (MQ=255) gATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGc < 2:91759/150‑1 (MQ=255) tCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGCAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCaa > 2:101963/1‑150 (MQ=255) ccGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGCTGGCCCCGGCACCCAGCTTAATGGTGA‑TGACGCCCCGGCCAAC‑AACAACGGCAAAACCACCGATGACGGCAAg > 2:302237/1‑150 (MQ=18) cGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAgg < 2:1161641/150‑1 (MQ=255) aGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGAtt > 1:619973/1‑150 (MQ=255) ccATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCa > 2:1673018/1‑150 (MQ=255) cATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCAc > 1:774707/1‑150 (MQ=255) aTGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCAcc < 2:1614117/150‑1 (MQ=255) ggTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAAAGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGt > 2:1598683/1‑150 (MQ=255) gTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGTCAAAACCACCGTTGACGGCAAGGATTCCACCggga > 1:978736/1‑148 (MQ=255) gTATCAAGATCGACGGTGACAATGCAATCGTAAATAACGAAGGAGATATCACCTTCTCAAAGGGTTGCTCCGTCACCCAGATTAATGGTGA‑TGACGCCACTGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTa < 2:1561018/150‑1 (MQ=17) tCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAATGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACgg > 2:1080651/1‑150 (MQ=255) tCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACgg > 1:1887426/1‑150 (MQ=255) cAGATCGACGGTGACAAGGCCACCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGaa > 1:659081/1‑150 (MQ=255) aGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGaaa < 2:18750/150‑1 (MQ=255) gATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAAt > 2:1993180/1‑150 (MQ=255) aTCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATc > 2:1633822/1‑150 (MQ=255) tCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAAttg < 1:1598684/150‑3 (MQ=255) cGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGTTTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCaa > 2:1989893/1‑150 (MQ=255) gACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGA‑TGACGCCACg < 1:775052/90‑1 (MQ=14) gACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCCCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGA‑TGACGCCACg > 2:775051/1‑90 (MQ=17) aCGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACg < 2:906772/150‑1 (MQ=255) aCGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACg < 1:1146518/150‑1 (MQ=255) aCGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACAAACGGTGGCACCGGAACACAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGATGACGGCAAGGATTCCACCTGTACGGAAATaaaag > 1:1112339/1‑148 (MQ=17) cGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACgg > 1:853788/1‑150 (MQ=255) ggTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGt < 2:1453076/150‑1 (MQ=255) tGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGtaa > 1:21751/1‑150 (MQ=255) aCAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCATATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACTGCAAAACCACCGTTGACGGCAAGGATTCCACCGTTACGGAAATCAACGGtaata < 1:1250598/150‑1 (MQ=255) aaGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAAc < 2:1809167/150‑1 (MQ=255) ccATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGA‑TGACGCCACGGCAAAC‑AACAACgg > 2:2004496/1‑91 (MQ=255) ccATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGA‑TGACGCCACGGCAAAC‑AACAACgg < 1:2004497/91‑1 (MQ=255) cGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGA‑TGAc > 2:731100/1‑67 (MQ=255) aTAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTc > 2:1331559/1‑150 (MQ=255) aaCGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAg < 1:1382089/150‑1 (MQ=255) aCGAAGGCGAGAGCACCATCACAAACGGTGGCACCGGCACCCAGATTAAAGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACAACCGTTGACGGCAAGGAATCCACCGGTACGGAAATAAAAGGAAATAACGGAAAAGTTATTCAgg > 1:55651/1‑150 (MQ=14) ggCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGc < 1:695707/150‑1 (MQ=255) cGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGCCGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATTACGGAAAAGTTATTCAGGACGGCGa > 2:1074014/1‑150 (MQ=255) agagCACCATCACCAACGGTGGCACCGGCACGCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACg > 2:1237733/1‑87 (MQ=18) agagCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCTCCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATc < 2:898919/150‑1 (MQ=255) cACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGa < 2:1243004/150‑1 (MQ=255) ccATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGt > 2:1311270/1‑76 (MQ=39) ccATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGt < 1:1311271/76‑1 (MQ=39) ccATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGAGCTGGATg > 1:1275500/1‑150 (MQ=255) tCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCa > 2:496950/1‑150 (MQ=255) cACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAg > 2:1571477/1‑150 (MQ=255) aCCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAg > 1:1755804/1‑81 (MQ=38) aCGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAACCCACCGTTGACGGCAAGGAATCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAgcggcg < 2:1976135/150‑1 (MQ=255) ggcaccggcaccCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGt < 1:570116/150‑1 (MQ=255) caccggcaccCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATAAACGGAAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCa > 2:676697/1‑150 (MQ=255) accggcaccCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCAcc > 2:1672818/1‑78 (MQ=39) accggcaccCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCAcc < 1:1672819/78‑1 (MQ=39) accggcaccCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCAc < 1:772462/150‑1 (MQ=255) ccggcaccCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAATGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACg < 1:1080652/150‑1 (MQ=255) cggcaccCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGc > 1:1121944/1‑46 (MQ=255) cggcaccCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGc < 2:1121943/46‑1 (MQ=255) cggcaccCAGATAAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGGACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACgg < 1:101963/150‑1 (MQ=255) gcaccCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAg > 2:807604/1‑65 (MQ=40) gcaccCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAg < 1:807605/65‑1 (MQ=40) cccAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGAtt > 1:795273/1‑66 (MQ=39) cccAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGAtt < 2:795272/66‑1 (MQ=39) cccAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGAGGCGGTCACGGTATTg > 2:1374031/1‑150 (MQ=255) cAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGaa > 1:1148697/1‑149 (MQ=255) aGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACTGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAAAGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGata < 1:87488/150‑1 (MQ=255) gATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATATCGGAAAAGTTATTCAGGACGGAGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGatat < 1:302237/150‑1 (MQ=255) tAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACg < 2:361731/70‑1 (MQ=35) tAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACg > 1:361731/1‑70 (MQ=35) aaTGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCTACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCAcc > 1:1707080/1‑150 (MQ=255) tGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGCCGGCGATCTGGATGTCAGCGGCGGCGGTCACGGGATTGATATCAcctg > 1:404729/1‑148 (MQ=255) | CCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGA‑TGACGCCACGGCAAAC‑AACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGG > NC_000913/1466197‑1466494 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |