New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2822705 =76 (0.450)32 (0.230)
+GATTTGAGTCAGCTAGGAGGTGACTGAG		 14/242 2.3 21.1% intergenic (‑66/+3) recX/recA RecA inhibitor RecX/DNA recombination/repair protein RecA
?NC_000913 = 4171809 220 (1.300)intergenic (+53/‑248) rrfB/murB 5S ribosomal RNA/UDP‑N‑acetylenolpyruvoylglucosamine reductase

AGTTGCTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2822793‑2822705
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATG  <  NC_000913/4171809‑4171754
                                                                                         ||||||||||||||||||||||||||||                                                        
AGTTGCTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGAC                         <  2:1318349/150‑1
 GTTGCTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACT                        <  1:128025/150‑1
   TGCTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAGATAAAACGAAAGGCCCAGTCTTTCGACTGA                      <  1:521616/150‑1
   TGCTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGA                      <  2:193860/150‑1
    GCTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAG                     <  1:1748701/150‑1
    GCTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAG                     <  2:1888220/150‑1
    GCTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAG                     <  2:1287901/150‑1
    GCTGCTGAGCAACCCGAACTCAACGCCGGACTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAG                     <  1:2574532/150‑1
     CTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCTCAGTCTTTCGACTGAGC                    <  2:487306/150‑1
     CTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCTCAGTCTTTCGACTGAGC                    <  2:1830487/150‑1
     CTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAGC                    <  2:446849/150‑1
     CTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAGC                    <  1:2042158/150‑1
     CTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAGC                    <  2:2065708/150‑1
     CTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAGC                    <  1:545075/150‑1
     CTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAGC                    <  2:1400782/150‑1
      TGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAGCC                   <  1:1384727/150‑1
      TGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAGCC                   <  2:2269577/150‑1
      TGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAGCC                   <  2:1567069/150‑1
      TGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAGCC                   <  1:263991/150‑1
      TGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAGCC                   <  1:1384626/150‑1
      TGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAACATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAGCC                   <  2:1766259/150‑1
       GCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCT                  <  2:2259626/150‑1
        CTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTT                 <  1:2064288/150‑1
        CTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTT                 <  1:1647162/150‑1
         TGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTT                <  2:1542838/150‑1
         TGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTT                <  2:2706139/150‑1
          GAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTC               <  1:386373/150‑1
           AGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCG              <  2:737102/150‑1
            GCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGT             <  1:2454125/150‑1
            GCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGT             <  1:2380371/150‑1
              AACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAAATAAAACGAAAGGCTCAGTCTTTCGACTGAGCCTTTCGTTT           <  1:1231150/150‑1
                       TCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCGGATTTGAGTCAGCTAGGAGGTGACTGAGCATCAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATG  <  2:2701110/150‑1
                                                                                         ||||||||||||||||||||||||||||                                                        
AGTTGCTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGCAGAAACTAACGAAGATTTTTAATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2822793‑2822705
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATG  <  NC_000913/4171809‑4171754

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.