Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913_3_pae_tpiA	2,106,741	A→T	S162S (TCT→TCA)	wbbH ←	O‑antigen polymerase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913_3_pae_tpiA	2,106,741	0	A	T	100.0%	219.0 / NA	63	S162S (TCT→TCA)	wbbH	O‑antigen polymerase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base T (34/29);  total (34/29)

CTCTATTAACACCTACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTT‑TTACTTACCTTTGTATTAGTAAATTTTTTAGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGAACTGGTAGTTACTT  >  NC_000913_3_pae_tpiA/2106596‑2106879                                                                                                                                                   |                                                                                                                                           ctctATTAACACCTACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTT‑TTAATTACCTTTGTATTAGTAAATTTTTTTGag                                                                                                                                         >  1:670062/1‑148 (MQ=255)    tATTAACACCTACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTT‑TTACTTACCTTTGTATTAGTAAATTTTTTTTACCaa                                                                                                                                      >  2:148192/1‑149 (MQ=255)              tACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTT‑TTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAAtaaataaat                                                                                                                            >  1:426256/1‑148 (MQ=255)                cGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTT‑TTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCa                                                                                                                          >  1:630862/1‑149 (MQ=255)                    gAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTT‑TTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAag                                                                                                                      >  1:900806/1‑149 (MQ=255)                      attcATAAGAGATGATAACCATAAAGACAAGTTGCTTAACAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTT‑TTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAagta                                                                                                                    <  2:48911/146‑1 (MQ=255)                          aTAAGAGATGATAACCATAAAGACAATTTGCTTACCAGAATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTT‑TTACTTACCTTTGTATTAGTAAATTTTTTTGATCAAATAAATAAAGCAAAAGTAGTTa                                                                                                                >  2:1001879/1‑149 (MQ=255)                              gagaTGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTT‑TTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAAt                                                                                                            >  1:474376/1‑149 (MQ=255)                                 atgatAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTT‑TTACTTACCTTTGTATTATTAAATTTTTTTGACCAAATAAATAAACCAAATGTATTTAGaataat                                                                                                         >  2:14323/1‑149 (MQ=255)                                      aaCCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTT‑TTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCt                                                                                                    >  1:710065/1‑149 (MQ=255)                                         cATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTT‑TTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCa                                                                                                 >  1:795880/1‑149 (MQ=255)                                          aTAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTT‑TTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCAt                                                                                                >  1:372461/1‑149 (MQ=255)                                          aTAAAGACAATTTGCTTACCAATAATCAGTATCACAGTCGCTATGAATACAATAAAAACAAGTAAAGTAAATGTT‑TTACTTACCTTTGTCTTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCAt                                                                                                >  2:1049917/1‑149 (MQ=255)                                           tAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTT‑TTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATg                                                                                               >  1:871916/1‑149 (MQ=255)                                               gACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTT‑TTACTTACCTTTGTATTAGTAAATTTTTTTGACCGAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATg                                                                                           >  1:151653/1‑149 (MQ=255)                                               gACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTT‑TTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATg                                                                                           <  1:586928/149‑1 (MQ=255)                                               gACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTT‑TTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATg                                                                                           >  2:554388/1‑149 (MQ=255)                                                  aaTTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTT‑TTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTg                                                                                        >  1:14720/1‑149 (MQ=255)                                                          taacAGTATAGAGTATAATAGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTT‑TTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAAttt                                                                                <  2:472453/146‑1 (MQ=255)                                                           aCCAGTACTCACGATAATTGCAAAGAAAAAAAAAAAAAAAACAAGTAAAGTAAATGTT‑TTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTc                                                                               <  2:322891/149‑1 (MQ=255)                                                            ccAGTATTCAGTATAATTGCACAGATGAATAAAATAAACACAAGTCAAGTAAATGTT‑TTACTTACATAAACAGTATTAAATTTTTTTCGCTGAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCt                                                                              <  1:554388/149‑1 (MQ=255)                                                             cAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTT‑TTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCtt                                                                             <  1:765272/149‑1 (MQ=255)                                                               gTATTCAGTATAATTGTACAGCTGTAAATAATGTACACACGTAAAG‑CCGTGTTAGTGCTTACCTTTGTATTAGTAAATTGTGTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGa                                                                           <  1:1114030/149‑1 (MQ=255)                                                               gTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTT‑TTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGa                                                                           <  1:306356/149‑1 (MQ=255)                                                                tATTCAGTATAATTTCAAATATGAATACAATAAAAACAAATAAATAAATTATT‑TTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGAt                                                                          <  1:88663/149‑1 (MQ=255)                                                                tATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTT‑TTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGAt                                                                          <  2:474376/149‑1 (MQ=255)                                                                tATTCAATAGAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTT‑TTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGAt                                                                          <  2:664274/149‑1 (MQ=255)                                                                 aTTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTT‑TTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGAtg                                                                         >  1:741319/1‑149 (MQ=255)                                                                  ttCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTT‑CTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGAATGTATGCTGAGAAATTTCTTGAtgt                                                                        >  2:1108102/1‑149 (MQ=255)                                                                          aaTTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTT‑TTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCACAAGTAGTTCTAATGATTGGCTGCATGTATACTGAAAAATTTCTTGATATGTCTTCaa                                                                >  2:939735/1‑149 (MQ=255)                                                                            ttGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTT‑TTACTTACCTTTGTAGTAGTAAATTCTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACa                                                              >  1:261259/1‑149 (MQ=255)                                                                               cAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTT‑TTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCa                                                           >  1:956631/1‑149 (MQ=255)                                                                                             aTAAAAACAAGTAAAGTAAATGTT‑TTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCaa                                             >  1:797020/1‑149 (MQ=255)                                                                                                aacaCAAGCAAAGTAAATGTT‑TTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAAtt                                          <  2:507125/146‑1 (MQ=255)                                                                                                 aaaCAAGTAAAGTAAATGTT‑TTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTc                                         >  1:126572/1‑149 (MQ=255)                                                                                                    cAAGTAAAGTAAATGTT‑TTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCata                                      <  2:984798/149‑1 (MQ=255)                                                                                                    cAAGTAAAGTAAATGTT‑TTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCata                                      <  2:1120691/149‑1 (MQ=255)                                                                                                       gtaaagtaaaTGTT‑TTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATAAGCATCTCTTATCAAATTCatattg                                   >  2:829166/1‑147 (MQ=255)                                                                                                         aaagtaaaTGTT‑TTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCt                                 <  1:494572/149‑1 (MQ=255)                                                                                                             taaaTGTT‑TTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGTAATTTCTTGATGTGTCTTCAACATAATCATCTCTTATCAAATTCATATAGcaatta                             >  2:803903/1‑144 (MQ=255)                                                                                                             taaaTGTT‑TTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTc                                                                               >  1:119963/1‑99 (MQ=255)                                                                                                             taaaTGTT‑TTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTc                                                                               <  2:119963/99‑1 (MQ=255)                                                                                                             taaaTGTT‑TTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCtaagt                             <  1:1049917/149‑1 (MQ=255)                                                                                                             taaaTGTT‑TTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCtaagt                             >  1:826019/1‑149 (MQ=255)                                                                                                             taaaTGTT‑TTACTTACCTTTGTATTAGTAAAGTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTTGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCtaagt                             <  2:553937/149‑1 (MQ=255)                                                                                                                aTGTT‑GTACTTACCTTTGTATTAGTAAATTTTGTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCtaagtaag                          <  2:171951/149‑1 (MQ=255)                                                                                                                 tGTT‑TTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTCTCAAATTCATATAGCTAAGTAAGc                         >  2:883625/1‑149 (MQ=255)                                                                                                                 tGTT‑TTACTTACCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGc                         <  2:372461/149‑1 (MQ=255)                                                                                                                 aggtgttacttacCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCtaagtaag                          <  2:970943/144‑1 (MQ=255)                                                                                                                         cttacCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATTTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAACTAAGTAAGCTAGTccc                  >  2:865517/1‑149 (MQ=255)                                                                                                                         cttacCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCa                                                           >  1:138864/1‑108 (MQ=255)                                                                                                                         cttacCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCa                                                           <  2:138864/108‑1 (MQ=255)                                                                                                                            acatttGTATTAGTAAATTTTTTTGACCAAATAAATAAAGTAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGATAAATTTCTTGATGTGTCTTTAACATCAGCATTTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGaa               <  2:457108/146‑1 (MQ=255)                                                                                                                            acCTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGaa               >  1:563699/1‑149 (MQ=255)                                                                                                                              cTTTGTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATGTCTTGATGTGTCTTCAACATCAGCATCTCTTATCCAAGTTATGTAGCTAAGTACGTAACTACCGAACt             >  1:523452/1‑149 (MQ=255)                                                                                                                                ttGTATTAGTAAATTTTTTTGACCAAAGAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGAACTgg           <  2:366968/149‑1 (MQ=255)                                                                                                                                  gTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTAt                                                                                            >  1:956932/1‑66 (MQ=255)                                                                                                                                  gTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTAt                                                                                            <  2:956932/66‑1 (MQ=255)                                                                                                                                  gTATTAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTCGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGAACTGGTa         <  1:548191/149‑1 (MQ=255)                                                                                                                                     ttAGTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGAACTGGTAGtt      <  1:456584/149‑1 (MQ=255)                                                                                                                                        gTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCa                                                                                                 <  1:730333/55‑1 (MQ=255)                                                                                                                                        gTAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCa                                                                                                 >  2:730333/1‑55 (MQ=255)                                                                                                                                         tAAATTTTTTTGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGAACTGGTAGTTACtt  <  2:741319/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                           CTCTATTAACACCTACGATGAATGCATAAGAGATGATAACCATAAAGACAATTTGCTTACCAGTATTCAGTATAATTGCAAAGATGAATACAATAAAAACAAGTAAAGTAAATGTT‑TTACTTACCTTTGTATTAGTAAATTTTTTAGACCAAATAAATAAAGCAAAAGTAGTTAGAATGATTGGCTGCATGTATGCTGAGAAATTTCTTGATGTGTCTTCAACATCAGCATCTCTTATCAAATTCATATAGCTAAGTAAGCTAGTCCCGAACTGGTAGTTACTT  >  NC_000913_3_pae_tpiA/2106596‑2106879

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑