New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	4070452 =	75 (2.350)	9 (0.290)	9/274	2.4	11.4%	intergenic (‑51/+63)	yihR/yihS	putative sulphoquinovose mutarotase/sulphoquinovose isomerase
	?	NC_000913_3_pae_tpiA	4070475 =	67 (2.170)					intergenic (‑74/+40)	yihR/yihS	putative sulphoquinovose mutarotase/sulphoquinovose isomerase
Rejected: Frequency below/above cutoff threshold.

CTGCATTGCCTGGTGATCCCGCGTATCCCGTTAGCGCCCGGCATGGCTCCAGCGGTTGCAGCGGGTCTGCTGGATATTAATGCGAAATAACTGATCTGAAAATAGGGTGCGGGTTTTCCCCTCTCCCTAACCCTCTC‑CCCAAAGGGGCGAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_tpiA/4070604‑4070452 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagggTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCAACCGCTGGAGCCATGCCGGGCGCTAACGGGATACGCGGGATCACCAGGCAATGCAGCAGGTGATAAATATCCT  >  NC_000913_3_pae_tpiA/4070475‑4070621                                                                                                                                                                                                                                                                                                               CTGCATTGCCTGGTGATCCCGCGTATCCCGTTAGCGCCCGGCATGGCTCCAGCGGTTGCAGCGGGTCTGCTGGATATTAATGCGAAATAACTGATCTGAAAATAGGGTGCGGGTTTTCCCCTCTCCCCAACCC‑CTCTCCCAAAGGGGCG                                                                                                                                                         >  1:33318/1‑149  TGCATTGCCTGGTGATCCCGCGTATCCCGTTAGCGCCCGGCATGGCTCCAGCGGTTGCAGCGGGTCTGCTGGATATTAATGCGAAATAACTGATCTGAAAATAGGGTGCGGGGTTTCCCCTCCCCCGAACCCTCTA‑CCCCAAGGTGCGt                                                                                                                                                        >  2:544711/1‑148   GCATTGCCTGGGTATCCCGCGGATCCCGTTAGCGCCCGGCATGGCTCCAGCGGTTGCAGCGGGTCTGCTGGATATTAATGCGAAATAACTGATCTGAAAATAGGGTGCGGGTTTTCCCCTCTCCCTAACCCTCTC‑CCCAAAGGGGCGAG                                                                                                                                                       <  2:312529/149‑1    CATTGCCTGGTGATCCCGCGTATCCCGTTAGCGCCCGGCATGGCTCCAGCGGTTGCAGCGGGTCTGCTGGATATTAATGCGAAATAACTGATCTGAAAATAGGGTGCGGGTTTTCCCCTCTCCCTAACCCTCTC‑CCCAAAGGGGCGAGG                                                                                                                                                      <  1:244051/149‑1                                                                                                                   TTTCCCCTCTCCCTAACCCTCTC‑CCCAAAGGGGCGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCAACCGCTG                                                                    >  1:312903/1‑120                                                                                                                   TTTCCCCTCTCCCTAACCCTCTC‑CCCAAAGGGGCGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCAACCGCTG                                                                    <  2:312903/120‑1                                                                                                                       CCCTCTCCCTAACCCTCTC‑CCCAAAGGGGCGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCAACCGCTGGAGCCATGCCGGGCGCTAACGGGATACGCGGGA                                   >  1:266931/1‑149                                                                                                                              CCTAACCCTCTC‑CCCAAAGGGGCGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCAACCGCTGGAGCCATGCCGGGCGCTAACGGGATACGCGGGATCACCAG                            >  2:366896/1‑149                                                                                                                                   CCCTCTC‑CCCAAAGGGGCGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCAACCGCTGGAGCCATGCCGGGCCCTAACGGCATACGCGGGACCACCACGCAAc                       >  2:112119/1‑148                                                                                                                                    CCTCTC‑CCCAAAGGGGCGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGAT                                                                                                                >  1:76380/1‑59                                                                                                                                    CCTCTC‑CCCAAAGGGGCGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGAT                                                                                                                <  2:76380/59‑1                                                                                                                                     CTCTC‑CCCAAAGGGGCGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCAACCGCTGGAGCCATGCCGGGCGCTAACGGGATACGCGGGGTGACCAGCGAATGC                     >  1:931/1‑149                                                                                                                                           CCCAAAGGGGCGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCAACCGCTGGAGCCATGCCGGGCGCTAACGGGATACGCGGGATCACCAGGCAATGCAGCAG                <  1:366896/149‑1                                                                                                                                                         GGTTAGGGAGGAGCTAAACACCGTACCCTACTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCAACCGCTGGAGCTATGCCGGGCGCTAACGGGATACGCGGGATCACCAGGCAATGCAGCAGGTGATAAATATCCT  <  1:280405/149‑1                                                                                                                                                                                                                                                                                                               CTGCATTGCCTGGTGATCCCGCGTATCCCGTTAGCGCCCGGCATGGCTCCAGCGGTTGCAGCGGGTCTGCTGGATATTAATGCGAAATAACTGATCTGAAAATAGGGTGCGGGTTTTCCCCTCTCCCTAACCCTCTC‑CCCAAAGGGGCGAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_tpiA/4070604‑4070452 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagggTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCAACCGCTGGAGCCATGCCGGGCGCTAACGGGATACGCGGGATCACCAGGCAATGCAGCAGGTGATAAATATCCT  >  NC_000913_3_pae_tpiA/4070475‑4070621

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.