| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_tpiA | 4,295,976 | 0 | C | T | 27.6% | 157.2 / 81.1 | 124 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Reads supporting (aligned to +/- strand): ref base C (47/42); new base T (18/16); total (66/58) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.62e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 128 total aligned reads displayed.
GTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGC > NC_000913_3_pae_tpiA/4295828‑4296122 | gTCGGATAAGGCTTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAAc < 2:1288854/149‑1 (MQ=17)gTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCCTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAAc < 2:981229/149‑1 (MQ=17)gTCGGATAAGGCGTTTATGCCACATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAAc > 1:978335/1‑149 (MQ=17) aggATAAGGCGCTTATGCCACACCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGc < 1:747354/148‑1 (MQ=12) ggATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGcc < 2:843397/149‑1 (MQ=17) gATAAGTCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTGGTATCATTCGTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCt < 1:1419905/149‑1 (MQ=11) gATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCACTGCCt > 2:358698/1‑149 (MQ=17) tAAGGCGTTTACGCCGCATCCTATATCAACGCCTGGTGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGa < 2:878679/149‑1 (MQ=255) tAAGGCATTTATTCCGCATCCTAAATCAACGCCTTATTCGACGCTTGACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGa < 1:1123173/149‑1 (MQ=11) aaGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGAt < 1:1286000/149‑1 (MQ=32) aaGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCGTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGAt < 1:1394674/149‑1 (MQ=17) ggCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGc > 1:843397/1‑149 (MQ=32) gCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGCCAGCGCAATAGCCTGATTTAGCGTGATATTGT‑AGGTCGGGTATGGCGTTTACGCCGCATCCGACATCATTGCCTGATGCg > 2:571408/1‑149 (MQ=11) gCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCg < 1:813277/149‑1 (MQ=32) gCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGAAAAGGCGTTTACGCCGCATCCGACATCAACCCCTGATGCg > 1:1441552/1‑149 (MQ=17) gTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCATACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGAc > 2:324652/1‑149 (MQ=17) tttATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGTCGTTTCCGCCGCATCCGACATCAATTCCTGATGCTACg > 1:101701/1‑149 (MQ=11) ttATGCCGCATCCGACATCCACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGc < 1:1102845/149‑1 (MQ=17) ttATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGc > 2:837563/1‑149 (MQ=17) tATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACAGCAACCACTGATGCTACGCt > 1:1054159/1‑149 (MQ=255) aTGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGcgt > 1:345931/1‑147 (MQ=17) cGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGATTAAGGCGATTACGCCGCATCCGACATCAACGCCTGATACGACGCTTGCcg > 1:302720/1‑149 (MQ=255) cATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACCCCAGCCAGAGCACTAGCCTGAGTTAGCGTGAGTATGT‑CCATCGGTTAAGCCGGGTGCGCGCCATCCCACTTCAACAACTAATGCGACGCTTGCcgcg > 2:1353101/1‑149 (MQ=2) tCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCCCGTc > 2:129823/1‑149 (MQ=25) cgatttCAAAGCTTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTTATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCtt < 1:104570/144‑1 (MQ=11) cGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCt > 2:747450/1‑127 (MQ=18) cGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCt < 1:747450/127‑1 (MQ=18) cGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCtt > 2:1380699/1‑149 (MQ=21) gACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTa > 1:1255803/1‑149 (MQ=25) aCATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTAt > 2:1349650/1‑149 (MQ=21) tCACCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCCGACAGCGCAATAGCCTGATTTCGCGTTATTTTGT‑TGGGCCAACAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAg < 1:704635/149‑1 (MQ=11) cAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAgg < 1:1388229/149‑1 (MQ=21) aaCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGTATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATc < 1:1425612/145‑1 (MQ=19) aggCCTGATGCGACGCTTGACGGGTCTTATCAGGCCTAGGCCAGACAGCGCAATGGCCTGATTTAGGGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc < 2:343052/147‑1 (MQ=11) aCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc > 2:1150687/1‑149 (MQ=21) aCGCCTGATGCGACGCTTAACGCGTCTTAGCAGGCCTAAGCCTGACGGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGTCTGGTGCGACGCTTGCGGCGTATTATCAggtc > 1:420104/1‑147 (MQ=11) gCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCCGACGCAACCCCAGTCGCGTCTTATCAGGCCTa > 1:28409/1‑149 (MQ=11) ccTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCGGACGGCTCAAGAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTat < 1:1353101/149‑2 (MQ=255) ccTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTat > 2:1162231/1‑148 (MQ=21) cTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGGCTTCTCAGGCCTAcc > 1:262142/1‑148 (MQ=255) tGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTatct > 2:68186/1‑146 (MQ=17) aTGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAAGGCCTGATGCGCCGCTTGCCGCGTCTTATCAGGCCTCCGCCa > 2:860469/1‑149 (MQ=255) aTGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCa < 1:412035/149‑1 (MQ=38) aTGCGACGCTGGACGCGTCTTAGCAGGCCGACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTatctta < 2:176628/149‑6 (MQ=11) tGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAg < 2:1389123/149‑1 (MQ=39) ccgcgTCTTATCAGGCCGACGCGAGACAGCGCAATAGCCTGATTTAGCGTGATGTTGT‑AGGTCGGACAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATa < 1:788269/148‑1 (MQ=255) gcgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACg > 2:170744/1‑107 (MQ=32) gcgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTCATTTTGT‑AGGTCGGATAAGGCGGTTACGCCGCATCCGACATCAACGCCTGAGGCGACGCTNGCCGCGGCTNATCAGGCCTACGCCACNCNgcggagatgg > 1:573678/1‑142 (MQ=11) gTCTTATCAGGTCGATGCCAGACAGCGGAATCTCCTGATTTAGCGTGATTTTGC‑AGGCCGGATAAGGCGTTTACGCCGCATCCGATATCAACGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCt < 2:658353/149‑1 (MQ=11) tCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGCCAACGGAATAGCCTg > 2:607452/1‑149 (MQ=255) tCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGCCCTACCCCAGACAGCGCATTACCCTg > 2:608942/1‑149 (MQ=255) ttATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGTTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGAt > 1:777480/1‑149 (MQ=37) ttATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGAt > 2:44959/1‑149 (MQ=37) ttATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGAAGCTTGCCGCCTGTTATCAGGCCTACGCCAGACGGCGCAATAGCTTggt > 1:34679/1‑147 (MQ=11) tATCAGCGCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGAtt < 1:718805/149‑1 (MQ=255) tCAGGCTTACGCCAGTCAGCGCAATAGCCTGATTTCGCGTGATTTTGT‑AGGTCTGATAAGGCGTTTCCGCCCCATCCGACATGATTTCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTa < 1:1425456/149‑1 (MQ=11) cTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGAt > 2:406821/1‑87 (MQ=33) cTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACCCCAACCAGCGCAATATCCTGCATTCGCGtca > 2:298922/1‑147 (MQ=11) tACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGcc < 2:1203506/98‑1 (MQ=255) tACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGcc > 1:1203506/1‑98 (MQ=38) gCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAtttt < 1:1082799/149‑1 (MQ=39) cAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGc > 2:359820/1‑76 (MQ=25) cAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGc < 1:359820/76‑1 (MQ=25) cAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAACCAGCGCAAATCCCTGATGTGCCGTGATTTTGt > 2:335400/1‑149 (MQ=11) aGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTa < 1:1114164/149‑1 (MQ=39) aCAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAgg < 1:1231762/149‑1 (MQ=39) atcgcAATAGCCTGATTTAGCGTGATTTTGT‑ACGTCGGATAACGCGTATACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTc < 1:736553/147‑1 (MQ=255) gcAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGCCAGCGCAATAGCCTGCTTTAGCGTGATTTTGTAGGTCGGa > 2:436111/1‑149 (MQ=255) aaTAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACg < 1:61788/77‑1 (MQ=25) aaTAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACg > 2:61788/1‑77 (MQ=35) gCCTGATTTAGGGCGATTTGGTGAGGT‑GTGTAGGGCGTTTACGCCGGATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGc < 2:644930/149‑1 (MQ=11) cTGATTTAGCGTGATTTTGT‑AGGTCGGATATGGCGTTTACGCGGCATCCGACATCAACGCCTGATGCGACGTTTGCCGCGTCTTATCAGGCTTACGCTAGGTGGGGCAATAGCGTGTGTTAGCGTGATTTTGTGGGTCGGTTCAGGGGt > 2:89555/1‑149 (MQ=11) cTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAgg > 2:745262/1‑90 (MQ=255) tGATTTCGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACCGCGCAATAGCCTGCTTTAGCGCGATCTCGTGCGCCGGATACGGctct > 2:150813/1‑146 (MQ=11) gCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCt < 1:315516/54‑1 (MQ=255) gATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATc > 1:70595/1‑149 (MQ=38) ttttGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCg > 2:1268127/1‑149 (MQ=39) ggTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAtttt < 1:718656/110‑1 (MQ=255) gTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGtt < 1:673843/128‑1 (MQ=40) gTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGtt > 2:673843/1‑128 (MQ=40) gcgATAAGGCGTTTACGCCGCGCCCTGCATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCTTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGc < 2:337130/147‑1 (MQ=11) ggATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGcc > 2:284669/1‑149 (MQ=38) aTAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCTTCCGACATCAAGGCCTg > 2:1286815/1‑149 (MQ=255) ggCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGc > 1:18124/1‑149 (MQ=38) ggCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGc > 1:893054/1‑149 (MQ=38) gCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCg > 1:1015025/1‑149 (MQ=39) tgtcgccgcATCCGACATCAACGCCGGATGCGACGATGACCGTGTCTTATTGGGCCTACGCCAGACGGCGCAATCGCCTGATTTAGCGTGATTTTGTAAGTCGGATAACGCGTTACTGCCGCATCCGACATCAACGCCTGATGCGACGc < 2:302720/146‑1 (MQ=11) ccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTc > 1:84420/1‑97 (MQ=39) ccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTc < 2:84420/97‑1 (MQ=39) tCCGTCATGAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGATATCAACGCCTGATGCGACGCTTAACGCGTc < 1:549631/149‑1 (MQ=12) cGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGcc > 2:750062/1‑108 (MQ=38) cGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGcc < 1:750062/108‑1 (MQ=38) cGACATCAACGCCTGATGAGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGCTTTACCGTGATGTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTCCCGCGTCtt > 1:653285/1‑149 (MQ=11) tgcATCAACGCGTGATGCGACGCTAGCCGCGTCTTATCAGGCAGACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTa < 2:232170/147‑1 (MQ=255) gACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACACGTCTTa > 1:753361/1‑149 (MQ=25) aTCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGCTAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGCCTTATCa > 1:456919/1‑149 (MQ=21) ttaaCGCCTGATGCGACGCTTTCCGCGTCTTATCAGGTCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAg < 1:398747/147‑1 (MQ=12) tCAACGGCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAg < 2:345086/149‑1 (MQ=17) tCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGa < 1:1357534/88‑1 (MQ=37) aaCGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGc > 1:1347780/1‑149 (MQ=32) | GTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGT‑AGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGC > NC_000913_3_pae_tpiA/4295828‑4296122 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |