| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 1207805 | 96 (0.820) | 19 (0.180) | 18/248 | 8.8 | 16.4% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_pae_tpiA | = 1209602 | 109 (1.050) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_pae_tpiA/1207646‑1207805‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggtttgggagaaggCTCTGCATTACCTGTTGGTG‑TCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTG‑AAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGACAAATAAATTGCCTGATTTACGT < NC_000913_3_pae_tpiA/1209602‑1209455 GCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGT > 1:987977/1‑149GCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGACACGACTAGTTAATTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCGCGACAACCTTGGT > 2:1909177/1‑149 GTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTT > 1:1891170/1‑149 GGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCCCGACTAGTTACATTCCTCACTTCGCGCGATCCTCTGAAGCCAGAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGG < 2:1575408/149‑1 GGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGG < 2:170119/149‑1 GGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGG < 1:798510/149‑1 GTGGCGGCAGTCGGTGACAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGG < 2:1100104/149‑1 GTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGG < 1:1639359/149‑1 AGGCATCCGGTGCCAGCCTGTGGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA < 1:1054632/149‑1 AGGCATCCGGGGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA < 2:1447279/149‑1 CCAGCCTGGAGAAGGGGCGGCACGACCAGTCACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTA < 2:217638/149‑1 GACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTG‑TCCCGGTTCCGTG > 1:1689351/1‑149 ACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTG‑TCCCGGTTCCGTGGCCTTCAGCCAC > 2:608176/1‑149 CGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTT < 1:908963/88‑1 CGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTT > 2:908963/1‑88 GCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGATTGGGAGAAGGCTCTGCATTACCTGTTGGTGATCCCCGGT‑GTTGGCCTTCAGCCACTCC > 1:379220/1‑149 tgTCGCGCGCTGCTTTTAAGCCGCAAGAATCCGTGTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCGCTGCATTACCTGTTGGTG‑CCCCGGTTCCGTGGCCTTCAGCCACTCCGCC < 2:308530/147‑1 CTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAACGCTTGGTTTGGGAGAAGGCTTTGCATTACCTGTTGGTG‑TCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTG > 2:353133/1‑149 TGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTG‑TCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGCCTGG > 2:1605764/1‑149 AATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGACTCTGCATTACCTGTAGGTG‑TCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTG‑AAATGCAATGGTGC > 1:491022/1‑149 ATCCCTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTG‑TCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTG‑AAATGCAATGGTGCC < 1:862676/149‑1 GGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTG‑TCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTG‑AAATGCAATGGTGCCGCTTTTTC < 1:608176/149‑1 TCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAACCCTTGCTTTGGGAGAAGGCTCTGCATTACCTGTTGGTG‑TCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTG‑AAATGCAATGGTGCCGCTTTTTCTGCTGAA > 1:1861224/1‑149 AATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTG‑TCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTG‑AAATGCAATGGTGCCGCTTTTTCTGCTGCAGAA > 2:496123/1‑149 ATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTG‑TCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTG‑AAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCG > 2:500969/1‑149 ACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTG‑TCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTG‑AAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACT > 2:793710/1‑149 GGCTCTCGAAAACCATAGTTTCTGAGAAAGCTCTTCGTTACCGGGGGGTG‑TCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTG‑AAATCCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTT > 2:1755598/1‑149 TCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTG‑TCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTG‑AAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATC > 2:1341065/1‑149 TCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTG‑TCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTG‑AAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATC < 1:500969/149‑1 TCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTG‑TCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTG‑AAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGCAACTGGCAAAGGCTTATC > 2:1344628/1‑149 CTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTG‑TCACGGTTCCGTGGCCTTCAGCCTCTACGCCAACAGGCTGGCTG‑AAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGACAAATAA > 2:1651328/1‑149 gTTGGGAGAAGGCTCTGCATTACCTGTTGGTG‑TCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGCCGAAGTTTCGGT‑CCGCTTTTTCTGCTGATGAATTCCCGGAACTGGCAAAGGCTTATCCGACAAATAAATTGC < 1:1446052/148‑1 GGGAGAAGGCTCTGCATTACCTGTTGGTG‑TCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTG‑AAAT < 1:1391737/77‑1 GGGAGAAGGCTCTGCATTACCTGTTGGTG‑TCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTG‑AAAT > 2:1391737/1‑77 GAGAAGGCTCTGCATTACCTGTTGGTG‑TCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTG‑AAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGACAAATAAATTGCCTGAT > 2:932546/1‑149 GCTCTGCATTACTTGTTGGTG‑TCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTG‑AAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGACAAATAAATTGCCTGATTTACGT < 2:1012394/149‑1 GCTCTGCATTACCTGTTGGTG‑TCCCGGTTCCGTGGCCTTCAGCCCCTCCGCCAACAGGCTGGCGG‑AAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGACAAATAAATTGCCTGATTTACGT < 1:1857859/149‑1 GCTCTGCATTACCTGTTGGTG‑TCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTG‑AAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGACAAATAAATTGCCTGATTTACGT < 2:541922/149‑1 GCTCTGCATTACCCGTCGGTG‑TCCCGGTGCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTG‑AAATGCAATGGTGCCGCTTTTACTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGACAAATAAATTGCCTGATTTACGT < 1:353133/149‑1 GCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_pae_tpiA/1207646‑1207805‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggtttgggagaaggCTCTGCATTACCTGTTGGTG‑TCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTG‑AAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGACAAATAAATTGCCTGATTTACGT < NC_000913_3_pae_tpiA/1209602‑1209455 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |