BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,296,060	0	C	T	21.6%	410.4 / 119.1	239	intergenic (+266/+376)	gltP/yjcO	glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
Reads supporting (aligned to +/- strand): ref base C (98/87); new base T (34/17); total (135/104)
Fisher's exact test for biased strand distribution p-value = 1.11e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.96e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 240 total aligned reads displayed.

GGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCT  >  NC_000913/4295911‑4296208

ggTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACg                                                                                                                                                      >  1:182250/1‑151 (MQ=31)

 gTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGc                                                                                                                                                     >  2:245858/1‑151 (MQ=17)

  tCGGATAAGGCGTTTATGCCGCTTCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGcc                                                                                                                                                    <  1:435217/151‑1 (MQ=17)

  tCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGcc                                                                                                                                                    <  1:1591631/151‑1 (MQ=17)

  tCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGcc                                                                                                                                                    <  2:1995458/151‑1 (MQ=32)

  tCGGATAAGGCGTCTCTGCCGCATCCGAGATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGcc                                                                                                                                                    <  1:880079/151‑1 (MQ=255)

   cGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGAGACGGCGTTTACGCCGCATCCGACATCCACGCCt                                                                                                                                                   >  2:1887780/1‑151 (MQ=9)

    ggATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTg                                                                                                                                                  >  2:1004712/1‑151 (MQ=14)

      gtagggCGTGTAGGCCGCGTCCGGCGTCAACGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGAt                                                                                                                                                <  2:2435042/147‑1 (MQ=11)

       tAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAAGGCCTGATg                                                                                                                                               >  2:2659720/1‑151 (MQ=17)

         aGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCg                                                                                                                                             >  1:2111257/1‑151 (MQ=14)

             gTTTATGCCGCATCCGACATCAACGCCTGTTGCGACGCTTAACGCGTCTAACCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGc                                                                                                                                         <  1:1032190/151‑1 (MQ=9)

                tATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGGGAGTACGCCGCATCCGACATCAACGCCCGCTGCGACGCTTg                                                                                                                                      >  1:616858/1‑151 (MQ=255)

                tATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTg                                                                                                                                      >  2:455109/1‑151 (MQ=18)

                  tGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGcc                                                                                                                                    >  1:1426167/1‑151 (MQ=21)

                  tGCCGCAGCCGAGAGCAACGCAGAGTGCGACGCTTCACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGcc                                                                                                                                    <  1:2547947/151‑1 (MQ=11)

                   gCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTgagg                                                                                                                                   >  1:2276648/1‑148 (MQ=18)

                    ccGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCcg‑c                                                                                                                                 >  2:1185319/1‑151 (MQ=21)

                     cGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCcg‑cg                                                                                                                                <  1:2425453/151‑1 (MQ=18)

                      gCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGTCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCca‑cgg                                                                                                                               >  2:1609700/1‑150 (MQ=255)

                       gaTCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCG‑CGTc                                                                                                                              <  1:867861/150‑1 (MQ=18)

                        tgccGGCAGCACCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCG‑CGTCt                                                                                                                             <  1:2608304/149‑1 (MQ=255)

                        aTCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCG‑CGTCt                                                                                                                             >  1:945328/1‑151 (MQ=18)

                         tCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCcc‑cgccct                                                                                                                            >  1:2139107/1‑147 (MQ=255)

                             aCATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCG‑CGTCTTATCa                                                                                                                        >  1:1087462/1‑151 (MQ=18)

                             aCATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCG‑CGTCTTATCa                                                                                                                        <  2:1432703/151‑1 (MQ=21)

                             aCATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCa                                                                                                                        <  1:835906/151‑1 (MQ=38)

                              cATCAACGCCTGATGCGACGCTTAACGCGTCTTACCAGGCCTACGCCAGACAGCGCAATAGCCTGATTCAGCGTGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCG‑CCTCTTATCAg                                                                                                                       >  2:1831381/1‑151 (MQ=255)

                                tCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGc                                                                                                                     <  2:2560874/151‑1 (MQ=16)

                                tCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGTCGCTTGCCG‑CGTCTTATCAGGc                                                                                                                     >  1:1220890/1‑151 (MQ=25)

                                 cAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCG‑CGTCTTATCCGGcc                                                                                                                    >  2:733410/1‑151 (MQ=18)

                                 cAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGcc                                                                                                                    >  1:222176/1‑151 (MQ=18)

                                 cAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCGTGCCG‑CGTCTTATCAGGcc                                                                                                                    >  1:238915/1‑151 (MQ=25)

                                  aaCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATCTAGCGTGCTTTTGTAGGTGGGAGAAGGCGGTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTACCG‑CGTCTTATCAGGCCt                                                                                                                   >  2:1049333/1‑151 (MQ=11)

                                   aCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTa                                                                                                                  <  1:1858878/151‑1 (MQ=18)

                                    cGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTat                                                                                                                 >  1:2269087/1‑150 (MQ=18)

                                      ccggATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTatct                                                                                                               <  2:819771/148‑4 (MQ=9)

                                        tGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTatctta                                                                                                             >  2:1814997/1‑146 (MQ=2)

                                        tGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCa                                                                                                             >  1:2442115/1‑151 (MQ=38)

                                           tGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGAc                                                                                                          <  1:1069013/151‑1 (MQ=38)

                                                cGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATCGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGGCTTACCAGGCCTACGCCAACCAgcgg                                                                                                     >  1:2572832/1‑150 (MQ=11)

                                                       cgcgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGcc                                                                                              >  2:1934704/1‑151 (MQ=38)

                                                         cgTCTTATCAGGCCTACGCCAGACAGGGCAATGTCCTCATTCAGCGTGAGGATCTGGGACGGAAGAGGAGTCTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTg                                                                                            <  1:1763093/151‑1 (MQ=11)

                                                         cgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTg                                                                                            <  1:1939646/151‑1 (MQ=38)

                                                            cTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGAtt                                                                                         <  1:1192293/151‑1 (MQ=38)

                                                                tCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGc                                                                                     >  1:1703714/1‑151 (MQ=38)

                                                                tCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGc                                                                                     <  1:2162757/151‑1 (MQ=38)

                                                                 cAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCg                                                                                    <  1:335934/151‑1 (MQ=38)

                                                                    gCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGa                                                                                 <  2:1445165/151‑1 (MQ=38)

                                                                     ccTACGCCAGACAGCGCAATAGCCTGATTTATCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAt                                                                                <  1:679296/151‑1 (MQ=25)

                                                                        aCGCCAGGCAGCGCAATGGCCTGATTTAGGGTGATTTTGTGGGTCGGATCAGGCGTTTCCGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAtttt                                                                             <  2:1861726/151‑1 (MQ=11)

                                                                           ccAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTa                                                                          >  1:692774/1‑151 (MQ=38)

                                                                           ccAGACAGCGCAATAGCCTGACTGCGCGTGATTTTGTGGGTCGGACAGGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTa                                                                          <  2:1791766/151‑1 (MQ=11)

                                                                            cgcactgcggAATTGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAg                                                                         <  2:2147490/145‑1 (MQ=255)

                                                                            cAGACGGCGCAATGGCATGATTGAGGGTCATTTTGTAGGTCGGGTAAGGCATTTCCACCGCACCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAg                                                                         <  1:1501873/151‑1 (MQ=11)

                                                                             agtcgccgcATTAGCCTGATTTCGCGTGATTTTGTAGGTCGGATCGGGCGTTTCCGCCGCATCCGGTGTCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAgg                                                                        <  2:2486735/145‑1 (MQ=11)

                                                                             aGACAGCGCAATAGCCTGACTTCGGGTGATTTTGTAGGGCGGAGAAGGCGTTTCCGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAgg                                                                        <  1:1337561/151‑1 (MQ=11)

                                                                               aCAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTc                                                                      >  1:1108519/1‑151 (MQ=38)

                                                                                naGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACCTCAACCAGCGCAATATCTTGCTTTAGCGTGTTTTTGtgcgccg                                                                     >  2:127965/2‑145 (MQ=11)

                                                                                cAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCg                                                                     <  1:1726824/151‑1 (MQ=38)

                                                                                     cAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGTCCAATAACCTGACGTAGCGTCATCTTGCAGGGCGGATaa                                                                >  1:446108/1‑151 (MQ=11)

                                                                                     cAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACCTCAGCCAGCGCTATAGCCTGCAATCGCGTGGTATTGTAGGCCGGAtga                                                                >  2:1254037/1‑149 (MQ=11)

                                                                                      aacaGCCTTCTTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAg                                                               <  2:2532364/148‑1 (MQ=255)

                                                                                         aGCCTGATTTAGCGTGATTTTGTAGGGCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCg                                                            <  1:600547/151‑1 (MQ=38)

                                                                                           ccTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGtt                                                          >  1:752169/1‑151 (MQ=35)

                                                                                            cTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGCCAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGCTAAGGCGttt                                                         >  1:1775969/1‑151 (MQ=255)

                                                                                             tGATTTAGCGTGATTTTGTTGGTCGGATAACGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTa                                                        <  1:564654/151‑1 (MQ=255)

                                                                                                tttAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGc                                                     >  1:787125/1‑151 (MQ=38)

                                                                                                  tAGCTTGATTTTGTAGGTTGGATAAAGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCg                                                   <  2:1458701/151‑1 (MQ=255)

                                                                                                  tAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCg                                                   <  1:1993671/151‑1 (MQ=38)

                                                                                                    gCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCa                                                 <  1:221770/151‑1 (MQ=38)

                                                                                                    gCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGACTTAGCGGGAGTTTGCAGGTCGGCTAATGCGTTTATGCCGcg                                                 >  2:1653461/1‑150 (MQ=11)

                                                                                                          ttttGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGCCAGCGCAAAAGCCTGATTTCGCGTGATTTTGTGGGTCGGATAAGGCGTTTATGCGGCATCCGAc                                           >  2:318987/1‑151 (MQ=255)

                                                                                                                aGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAAc                                     >  1:1662962/1‑151 (MQ=38)

                                                                                                                 ggTCGGATAAGGCGTTTCCGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACg                                    <  2:1703692/151‑1 (MQ=38)

                                                                                                                 ggTCGGATAAGGCGTTTACGCTGCATCCGACATTAACGCTTCATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACg                                    <  2:138853/151‑1 (MQ=255)

                                                                                                                 ggTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGGGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTCGCGTGACTTTGTAGGTCGGATAGGGCGTTTATGCGGCGTCCGACATCaaac                                    >  1:651391/1‑149 (MQ=11)

                                                                                                                    cgtaTAAGGCGTTTACGCCGCACCCGGCATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCt                                 <  2:2365205/148‑1 (MQ=255)

                                                                                                                     ggATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTg                                <  1:1642117/151‑1 (MQ=38)

                                                                                                                     ggATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTg                                <  1:2241681/151‑1 (MQ=38)

                                                                                                                        tAAGGCGTTTACGCCGCATGCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATg                             <  1:1675637/151‑1 (MQ=37)

                                                                                                                        tAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGCTTATGCCGCATCCGACATCAACGCCTGATg                             >  1:1903720/1‑151 (MQ=38)

                                                                                                                          aGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCg                           >  1:1113934/1‑151 (MQ=38)

                                                                                                                                 tACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGCATTAGCGTGATTTTGTAGGTCGGATAAGGCGGTTATGCAGCGTCCGACATCAACGCCTGATGCGACGCTTa                    >  2:2240/1‑151 (MQ=255)

                                                                                                                                   cgccgcATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGcggcac                  >  1:578681/1‑146 (MQ=12)

                                                                                                                                     ccgcATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGGCGGATAAGGCGATTACGCTGCATCCGACATCAACGCCTGGTGCGACGCTGAAcgc                >  1:2091093/1‑151 (MQ=11)

                                                                                                                                      cgcATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAAcgcg               >  1:1897216/1‑151 (MQ=35)

                                                                                                                                      cgcATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAAcgcg               >  1:1432722/1‑151 (MQ=35)

                                                                                                                                        cctCCGACATCAACGCCTGATGCGACGATTGCCGACGT‑TTACCCGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTc             <  1:1865961/149‑1 (MQ=11)

                                                                                                                                         aTCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCt            >  1:1199391/1‑151 (MQ=35)

                                                                                                                                           ccGACATCACCGCCTGATGCGCCGCTTGCCG‑CGTCTGATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTa          <  2:692762/151‑1 (MQ=16)

                                                                                                                                               cATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGCTTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAg      <  1:355192/151‑1 (MQ=21)

                                                                                                                                               cATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAg      <  1:2193327/151‑1 (MQ=34)

                                                                                                                                               cATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAg      <  1:2025155/151‑1 (MQ=34)

                                                                                                                                                tggaccGCCTGAGGCGCCGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAACACCCGGGTTTAGCGTGATTTTGTAGGTCGGATAGTGCGTTTATGCCGCATCCGGCATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAgg     <  1:1317510/146‑1 (MQ=11)

                                                                                                                                                gtgaaCGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGACGCGTCTTATCAgg     <  2:872844/148‑1 (MQ=0)

                                                                                                                                                aTCACCGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAgg     <  1:528079/151‑1 (MQ=14)

                                                                                                                                                aTCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATAAGACGCGTTAAGCGTCGCATCAgg     <  1:1396585/151‑1 (MQ=11)

                                                                                                                                                 tCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATCGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGc    <  2:787113/151‑1 (MQ=18)

                                                                                                                                                  cAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTagatcgga   >  2:531378/1‑144 (MQ=17)

GGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCG‑CGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCT  >  NC_000913/4295911‑4296208

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`