| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,622,816 | 0 | G | A | 44.7% | 70.6 / 91.7 | 94 | intergenic (+75/+144) | yneM/dgcZ | inner membrane‑associated protein/diguanylate cyclase, zinc‑sensing |
| Reads supporting (aligned to +/- strand): ref base G (49/3); new base A (0/42); total (49/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.48e-23 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TTTATGGCCGTACTGGGAATAATTTTATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCAATGAATGTTAAACGGAGCT > NC_000913/1622667‑1622960 | tttATGGCCGTACTGGGAATAATTTTATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCg < 2:364742/150‑1 (MQ=255) tATGGCCGTACTGGGAATAATTTTATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGaa > 2:1412337/1‑150 (MQ=255) aTGGCCGTACTGGGAATAATTTTATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGaaa > 2:648206/1‑150 (MQ=255) tGGCCGTACTGGGAATAATTTTATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGaaaa > 1:993199/1‑150 (MQ=255) ggCCGTACTGGGAATAATTTTATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGaaaaaa < 1:230142/151‑1 (MQ=255) ggCCGTACTGGGAATAATTTTATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGaaaaa > 1:1303681/1‑150 (MQ=255) gCCGTACTGGGAATAATTTTATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGaaaaaa > 1:187097/1‑150 (MQ=255) gCCGTACTGGGAATAATTTTATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGACCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGaaaaaaa < 2:478262/151‑1 (MQ=255) aCTGGGAATAATTTTATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGc > 1:1151051/1‑151 (MQ=255) cTGGGAATAATTTTATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGcc > 2:55762/1‑151 (MQ=255) gAATAATTTTATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGt > 1:299448/1‑150 (MQ=255) aatTTTATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAAcc > 2:775611/1‑151 (MQ=255) attttattttCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACcg > 1:963079/1‑151 (MQ=255) tttttgtttttcgggCCGCTTTTTTCAGCCAAAAAGGGAATAACTAATGAAGGAAAATAACCCCTCCCCAACCCGCCCCT‑TTGTT‑ACG‑G‑TTGTTTACAG‑GGGGCT‑TT‑ATTTTTAGGACGGCAAAAAAAAACCGCCAGTAAACCGGCGGTg < 1:565069/150‑1 (MQ=255) tttctggttttctggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTg > 2:330364/1‑150 (MQ=255) ctggttttctggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATg > 2:1214418/1‑151 (MQ=255) ttttctggCCGCTTATTCCACCCAAAAAGGGGATGACAAATGAAGGGAGATAACCCCTCCCCAACCCGCCCCT‑TTTTT‑ACA‑G‑TTGTGAAAAG‑GGGGCT‑TT‑TTTTTTATGAGGGAAAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCtt < 2:1311888/150‑1 (MQ=255) tttctggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGc > 1:62549/1‑151 (MQ=255) tttctggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGc > 1:833746/1‑151 (MQ=255) ttctggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGc > 1:284625/1‑150 (MQ=255) ctggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATg > 1:345912/1‑151 (MQ=255) ctggCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATg > 1:374102/1‑151 (MQ=255) cgggCCGGGTTTTCCACCCAAAAAGGGGATGATAAATGAAGGGAGATAACCCCTCCCCTACCCGCCCCT‑TTTTT‑AAA‑G‑TTGTGTACAG‑GGGCCT‑TG‑TTTTTTATGCCGGAAAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCAt < 2:244384/148‑1 (MQ=255) tggcgtctttttccAGCCAAAAAGGGGATGACTAATGAAGGGAAATAACCCCCCCCCAACCCGCCCCT‑TTGTT‑ACT‑T‑TTGTGTACAG‑GGGGCT‑TG‑TTTTTTAGGCCGGAAAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATg < 1:1406942/137‑1 (MQ=255) gggCCGCTTTTTCCACCCAAAAATGGGATGACTAATGAAGGGAAAT‑ATCCCCCCCCCAACCCGCCCCTTTGTT‑CCA‑T‑TTGTGTAAAG‑GGGGCC‑TT‑TTTTTTATGCGGGCAAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATgg < 2:302587/150‑1 (MQ=255) cgcgTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGAt > 1:633615/1‑149 (MQ=255) gTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGAtt > 2:1347154/1‑151 (MQ=255) aTTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTtg > 2:673280/1‑151 (MQ=255) tCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTgtgt > 2:940583/1‑151 (MQ=255) tCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGGGAAAGCTTGCATGGTTAGGTTTgtgt > 2:453797/1‑151 (MQ=255) aaaaGGGGATGACTAATGAGCGGAAATAACCCCTCACCAACCCGGCCCT‑TTGTT‑ACG‑T‑TTGTGAAAAG‑GGGGCT‑TT‑TTTTTTATGCGGGAAAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCtt < 1:373461/150‑1 (MQ=255) aaaaGGGGATGACAAATGAACGGAGATAACCCCTCCCCAACCCGCCCCT‑TTGTT‑ACT‑G‑TTGTGTACAG‑GGGGCT‑TG‑TTTTTTATGACGGAAAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCtt < 1:391321/150‑1 (MQ=255) aatggggATAAATAATGAAAGGAAAAAACCCCCCCCCAACCCGCCCCC‑TTGTT‑ACA‑‑‑TTGGGGGAAA‑GGGGCCATT‑TTTTTTAGGCCGGAAAAAAAAAGCCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCttt < 1:677939/147‑1 (MQ=255) aTGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCtttt > 1:396107/1‑150 (MQ=255) ggtataattAATGAAGGGAAATACCCCCTCCCCAACCCGCCCCT‑TTTTT‑ACG‑T‑TTGTGTACAG‑GGGGCT‑TT‑TTTTTTATGACGGAAAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACg < 1:1199014/143‑1 (MQ=255) gggATAACTAATGAAGGAAGATACCCCCTCCCCTACCCGCCCCC‑TTGTC‑ACG‑T‑TTGTGTAAAG‑GGGGCG‑TG‑TTTTTTATGGGGGCAAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACg < 1:962709/151‑1 (MQ=255) gATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCt > 2:47606/1‑151 (MQ=255) gATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCt > 2:754240/1‑151 (MQ=255) gaatAATGAAGGGAGATAACCCCTCCCCTACCCGCCCCT‑TTGTT‑CCA‑G‑TTGTGTAAAG‑GGGGCT‑TG‑TTTTTTAGGACGGAAAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAAc < 1:112512/148‑1 (MQ=255) aattAATGAAGGGAGATATCCCCCCCCCTACCCGCCCCT‑TTTTT‑ACA‑T‑TTGTGTAAAG‑GGGGCT‑TT‑TTTTTTATGGCGGAAAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAAc < 1:5499/148‑1 (MQ=255) aacaaaTGAGAGGAGAAATCCCCCCCCCTACCCGGCCCT‑TTTTT‑ATA‑G‑TTGTG‑ACAAGGGGGCT‑TG‑TTTTTAATGAGGGCAAAAAAACTCCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAAc < 2:1060348/147‑1 (MQ=255) aaatAATGAAGGGAAATACCCCCCCACCAACCCGGCCCT‑TTTTT‑ACA‑G‑TGGTGAACAG‑GGGGCT‑TG‑ATTTTTATGACGGAAAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAAc < 1:1012317/148‑1 (MQ=255) tAATGAACGGAGATAATCCCTCACCTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAgg > 1:1332326/1‑151 (MQ=255) tAATGAACGGAGATAATCCCTCACCTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAgg > 1:734884/1‑151 (MQ=255) aaTGAACGGAGATAATCCCTCACCTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGc > 2:196021/1‑151 (MQ=255) gaaccggagaatttCCCCCCCCTACCCGGCACT‑TTGTT‑AGG‑G‑TTGTGTACAG‑GGGGCT‑TG‑GTTTTTATGCGGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCAt < 1:1080767/138‑1 (MQ=255) aaCGGAGATAATCCCTCACCTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCAttt > 2:332371/1‑151 (MQ=255) aaCGGAGATAATCCCTCACCTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCAttt > 1:599462/1‑151 (MQ=255) gagaTAATCCCTCACCTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCt > 2:690674/1‑151 (MQ=255) aataccccctccccaaCCCGCCCC‑TTTTTAACA‑T‑TGGTGAAAAG‑GGGGCT‑TT‑TTTTTTAGGACGGAAAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGc < 2:1407400/137‑1 (MQ=255) tAATCCCTCACCTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCAc > 2:1376664/1‑151 (MQ=255) tAATCCCTCACCTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCAc > 1:605201/1‑151 (MQ=255) tAACCCCTCACCTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCAc > 1:137534/1‑151 (MQ=255) aaTCCCTCACCTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACt > 2:1438640/1‑151 (MQ=255) aaTCCCTCACCTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACt > 2:227279/1‑151 (MQ=255) cccccTCCCCTACCCGCCCCC‑TTTTT‑ACA‑G‑TTGTGAACAG‑GGGGCT‑TG‑TTTTTTATGACGGCAAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTg < 1:609460/149‑1 (MQ=255) cccccTCCCCAACCCGCCCCT‑TTTTT‑ACT‑T‑TTGTGAAAAG‑GGGGCT‑TT‑TTTTTTAGGACGGAAAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTg < 1:648212/149‑1 (MQ=255) ccccccccccaaCCCGCCCC‑TTTTT‑TCC‑GTTTGTGAAAAG‑GGGGCT‑TT‑TTTTTTATGCCGGAAAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTg < 1:605742/141‑1 (MQ=255) ccccccccTACCCGGCCCT‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGCCT‑TG‑ATTTTTAGGACGGAAAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGAt < 2:1251357/145‑1 (MQ=255) ccccccccTACCCGCCCCT‑TTGTT‑ACG‑G‑TTGTGAACAG‑GGGCCT‑TG‑TTTTTTAGGACGGAAAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGAt < 1:280527/145‑1 (MQ=255) cccccccaacccGCCCCT‑TTTTT‑ACG‑G‑TTGTGAACAG‑GGGGCT‑TG‑TTTTTTATGAGGGAAAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATa < 1:1430216/141‑1 (MQ=255) cccccTAACCGCCCCC‑TTGTT‑AGT‑G‑TTTTATCCAG‑GGGGCC‑TG‑TTTTTTAGAACGCAAAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAAc < 2:1288780/148‑1 (MQ=255) ccacccaCCCGCCCC‑TTTTT‑AAATG‑TTGTGAAAAA‑GGGGCT‑TG‑TTTTTTAGGGGGGAAAAAAAAAGCCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAAc < 1:290352/145‑1 (MQ=255) ccctccccGCCCCT‑TTTTT‑ACA‑T‑TTGTATAAAA‑GGGGCT‑TT‑TTTTTTAGGACGAAAAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGa < 1:775618/145‑1 (MQ=255) ccTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGa > 2:18714/1‑150 (MQ=255) cTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAAt > 1:365441/1‑151 (MQ=255) tAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATc > 2:223668/1‑151 (MQ=255) tAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATc > 1:704796/1‑151 (MQ=255) aacccGCCCCT‑TTGTT‑ACG‑G‑TTGTGTAAAG‑GGGGCT‑TT‑TTTTTTATGAGGGAAAAAAAAACCCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATc < 1:49365/148‑1 (MQ=255) aacccGCCCCT‑TTGTT‑ACA‑G‑TGTTGAACAG‑GGGGCT‑TG‑TTTTTTAGGCCGGGAAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATc < 1:1418341/148‑1 (MQ=255) acccGCCCCT‑TTTTT‑ACA‑T‑TTGTGTAAAA‑GGGGCC‑TT‑TTTTTTATGCCGAAAAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATc < 1:301584/148‑1 (MQ=255) ggCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTg > 2:1029995/1‑150 (MQ=255) tttt‑ACA‑G‑TTGTGTAAAG‑GGGGCC‑TT‑TTTTTTAGGGGGGCAAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGt < 2:585902/148‑1 (MQ=255) t‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGc > 2:744408/1‑150 (MQ=255) cA‑G‑TTGTGTACAG‑GGGGCC‑TG‑TTTTTTATGACGGAAAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATc < 2:579043/151‑1 (MQ=255) g‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATc > 1:858917/1‑149 (MQ=255) tgtACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGtttt > 1:1080949/1‑151 (MQ=255) gtgaaaa‑GGGGCCTTG‑TTTTTTAAGACGGCAAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGtt < 2:1343015/145‑1 (MQ=255) gtACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTtc > 2:743196/1‑151 (MQ=255) aCAA‑GGGGCT‑TG‑TTTTTATTGAGGGCAAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTtctc < 2:187090/151‑1 (MQ=255) cagggggCC‑TT‑TTTTTTAGGCGGGAAAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCa < 2:920566/148‑1 (MQ=255) aa‑GGGGCC‑TGTATTTTGAGGGGGGGAAAAAAAGACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCa < 2:262745/151‑1 (MQ=255) ggggCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCaatg > 2:657564/1‑151 (MQ=255) ttttttttATGAGGGAAAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCaatgaatg < 1:860236/146‑1 (MQ=255) g‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCAATGAATGtt > 1:980382/1‑150 (MQ=255) tttttttAGGACGGAAAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCAATGAATGtt < 1:1214425/148‑1 (MQ=255) gttttttGAGACGACAAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCAATGAATGtt < 1:580527/148‑1 (MQ=255) gttttttATGAGGGAAAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCAATGAATGtt < 2:702411/148‑1 (MQ=255) aTTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCAATGAATGTTa > 1:1083197/1‑150 (MQ=255) tttttATGAGGGAAAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCAATGAATGTTaa < 1:459385/150‑1 (MQ=255) tttttAGGACGGAAAAAAAAAGCCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCAATGAATGTTaa < 1:828289/150‑1 (MQ=255) tttttAGGACGGAAAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCAATGAATGTTaa < 1:695352/150‑1 (MQ=255) ttttATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCAATGAATGTTAAAc > 2:107217/1‑151 (MQ=255) tttATGACGGCAAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCAATGAATGTTAAAc < 2:291409/150‑1 (MQ=255) gACGGCAAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCAATGAATGTTAAACGGAGCt < 1:1347152/151‑1 (MQ=255) | TTTATGGCCGTACTGGGAATAATTTTATTTTCTGGTTTTCTGGCCGCGTATTTCAGCCACAAATGGGATGACTAATGAACGGAGATAATCCCTCACCTAACCGGCCCC‑TTGTT‑ACA‑G‑TTGTGTACAA‑GGGGCC‑TG‑ATTTTTATGACGGCGAAAAAAAACCGCCAGTAAACCGGCGGTGAATGCTTGCATGGATAGATTTGTGTTTTGCTTTTACGCTAACAGGCATTTTCCTGCACTGATAACGAATCGTTGACACAGTAGCATCAGTTTTCTCAATGAATGTTAAACGGAGCT > NC_000913/1622667‑1622960 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |