| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,423,297 | 0 | G | C | 41.1% | 190.8 / 51.7 | 112 | intergenic (+103/+126) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| Reads supporting (aligned to +/- strand): ref base G (17/49); new base C (46/0); total (63/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.62e-17 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 114 total aligned reads displayed.
AATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCG > NC_000913/3423151‑3423446 | aaTCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCC‑GGGcc < 1:437994/151‑1 (MQ=255)aaTCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCACCCTCC‑cgggc > 2:440804/1‑149 (MQ=255)aaTCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCTGCCCCCCCCCCCCC‑CGGcc > 1:805283/1‑151 (MQ=255) tCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGGGGCCCGCCCCCCCCCCCCC‑ccgccgc > 1:19930/1‑150 (MQ=255) cAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCCCCCTCC‑GGGCCGtt > 2:655839/1‑151 (MQ=255) cAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCCCCCCCC‑GGGCCGtt > 2:786436/1‑151 (MQ=255) agagCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCTGCCCCCCCCCCCCC‑CGGCCGGTg > 1:349021/1‑151 (MQ=37) gagCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCCCC‑CGGCCGTTgt > 2:75142/1‑150 (MQ=255) agCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCC‑GGGCCGTTGCt < 2:415971/151‑1 (MQ=255) cGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCCCCCCCC‑CGGCCGCTGCttt > 1:1337478/1‑150 (MQ=255) cGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCC‑GGGCCGTTGCTTc < 2:135055/151‑1 (MQ=255) cGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCACCCCCC‑CGGGCGTttcttc > 2:277532/1‑151 (MQ=255) cGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCTTCCCCCCACCCCCC‑CGGCCGGTGCttt > 2:142219/1‑150 (MQ=37) gTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGGGGCCTGCCCGCCCCCCCCC‑CGGGCGTTGCttac > 1:424303/1‑149 (MQ=255) gTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCCCCCCCC‑CGGCCGTTGCTTCg > 2:435814/1‑151 (MQ=255) tACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCTGCCCGCCCCCCCCC‑CGGCCGGTGCCTCGc > 1:1023115/1‑151 (MQ=255) aCGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCACCCCCC‑CGGCCGGTGCTTCGc > 2:620574/1‑150 (MQ=255) aCGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGCACCGCCCCCCCCCCCCC‑CGGGCGTTGCTTCGc > 2:863798/1‑150 (MQ=255) cGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGGGTGCTGCCCCCCACCCCCC‑CGGCCGGTGGtttgga > 1:105506/1‑146 (MQ=255) gAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCCCC‑GGGGCCGTGCTTCGCaa > 2:1084686/1‑150 (MQ=255) aGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTCCCCGCCCCCCCCC‑CGGCCGCTGCTTCGCaaac > 1:494665/1‑149 (MQ=25) tttATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAAt < 2:179665/150‑1 (MQ=255) tttATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCCCCCCCC‑CGGCCGTTGCTTCCCAACGCTCaaaac > 2:1113254/1‑149 (MQ=25) tttATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCCCCCCCC‑CGGCCGGTGCTTCGCAACggtttaatc > 1:719179/1‑143 (MQ=25) tATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGTGTCTTTCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATcc < 2:1148135/150‑1 (MQ=255) gTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCCGCCCCCCCCCCCCC‑CGGCCGGTGCTTCGCCACGTTCAAAACCCCCCCccgc > 2:903840/1‑151 (MQ=21) tAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGTGTTCTGCCCCCCACCCCCC‑CGGCCGGTTCTTCGCAAAGTTCTAATACCCTCCcggcg > 2:703239/1‑151 (MQ=255) tAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCTGCCCCCCCCCCTCC‑CGGCCGCTGCTTTCCAACATTCAAATCCCCTCCcggcg > 1:942820/1‑151 (MQ=255) aaTCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGGTGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcggcgg < 2:226950/151‑1 (MQ=255) aaTTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTc < 1:37598/150‑1 (MQ=255) aaTTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCTGCCCGCCACCCCCC‑CGGCCGTTGCTTTGCAACGTTTAAATCCGCTCCCCGCGGGTTTGttc > 1:673538/1‑149 (MQ=255) aTGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCACCCCCC‑CGGCCGTTGCTTCGCCAAGTTCAAATCCCCTCCCCGCGGGTTTTTCctc‑ctcc > 2:378651/1‑150 (MQ=17) gTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGAGGCCTGCCCGCCCCCCTCC‑CGGGCGTTGCTTCGCCAAGTTCAAATCCACTCCCCGCGGAATTGTCCTA‑CTCagg > 2:703315/1‑151 (MQ=255) tAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGga < 2:960019/150‑1 (MQ=255) aGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGNCCTA‑CTCGGgag < 1:192710/150‑1 (MQ=255) cGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCTGCCCGCCCCCCCCC‑CGGCCGGTGCTTTGCAACGTTCAAAACCGCCCCCCGCCGGTTTTTCCTA‑CCCCGGggagggg > 1:756521/1‑148 (MQ=255) gCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCg < 2:241375/151‑1 (MQ=255) gCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCCCCCCCC‑CGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCCGCGGGTTTGTTCTA‑CTCCGGAGAGGGTTTACCg > 2:654057/1‑151 (MQ=14) gCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCCGCCCCCCACCCCCC‑CGGCCGTTGCTTCGCAACGTTCAAAACCGCTCCCCGCGGGTTTTTCCTA‑CTCCGGGGAGTGTTTAccc > 2:758853/1‑150 (MQ=17) aaaaGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGaca < 2:754336/151‑1 (MQ=255) aaaaGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCTGCCCGCCACCCTCC‑GGGGCGTTTGTTCGCAAAGTTCAAAACCCCTCCCGGCGGGTTTGTGCTA‑CTCCGGGGAGAGTTTACCggc > 1:279925/1‑148 (MQ=255) aaaGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGacaa < 2:56639/151‑1 (MQ=255) aaaGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGGCTGCCCGCCACCCTCC‑CGGCCGGTGCTTTGCAAAGTTCAAAATCGCCCCCCGCGGCGTTGTCCTA‑CTCCGGggaggggttaccccca > 1:368402/1‑138 (MQ=255) aaGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCCGCCCGCCACCCCCC‑CCGCCGGTGCTTTGCAACATTCCAATCCCCCCCCCGCGGGTTTTTCCTT‑CTCTGGGGAGGGTTTACCGacaa > 1:13331/1‑150 (MQ=14) gCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGacaaacaa < 2:1051692/151‑1 (MQ=255) ccATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGACAaacaac < 1:1265461/151‑1 (MQ=255) ccATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGACAaacaac < 1:1081470/151‑1 (MQ=255) cATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGGGCCCTGCCCGCCCCCCCCC‑CGGCCCCTGATTCCCAAAACTCTAATCCGCCCCCCGCGGGTTTTTCTTA‑CCCCCGGGAGTGtttcccccccaaaaaa > 2:961647/1‑136 (MQ=255) cATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGACAAacaaca < 2:622191/151‑1 (MQ=255) aTCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCAGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGACAAACAACAg < 2:284170/151‑1 (MQ=255) tCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCCCCCTCC‑CGGCCGTTGCTTCCCAACGGTCAAATCCGCCCCCGGCGGGTTTGTCCTA‑CTCGGGAGAGGGTTTACCGACAaaaaac > 1:1245967/1‑148 (MQ=14) ccTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGACAAACAACAGAt < 2:51581/151‑1 (MQ=255) ccTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCACCCTCC‑GGGCCGGTGCTTCGCAACGTTCAAATCCCCCCCCGGCGGGTTTGTCCTA‑CTCCGGAGAGTGTTTACCGACAAACAAAAGa > 2:243641/1‑150 (MQ=14) tttCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCCGCCCCCCACCCCCC‑CGGCCCTTGCTTCCCAACCTTCAAATTCCCTCCCCGCGGGTTTTTTCTA‑CCCCGGAGAGTGGTCACCGCCAAACAACAGATa > 2:819001/1‑150 (MQ=255) ttCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGACAAACAACAGATa < 2:548052/149‑1 (MQ=255) ttCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGACAAACAACAGATa < 2:196885/149‑1 (MQ=255) tCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGACAAACAACAGATaaa < 2:113637/150‑1 (MQ=255) cGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGACAAACAACAGATAAAAc < 1:1051414/151‑1 (MQ=255) cGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGACAAACAACAGATAAAAc < 2:900163/151‑1 (MQ=255) gATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACaa < 1:1374234/151‑1 (MQ=255) ggCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCCGCCCGCCCCCCCCC‑CGGCCGTTGCTTCCCAACGTTCAAATACGCCCCCCGCGGGTTTTTTCTT‑CTCCGGGGGGGGGTTACCGACAAACAACAGATAAAACaaaa > 1:774175/1‑150 (MQ=14) tttCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCCTTCCCCCCCCCACCCCCC‑CGGCCGTTTCTTCTCAACCCTCAAATCCGCCCCCCGCCGGTTTTTTCTACCTCGGG‑GAGTGTTCACCCACCAACAACAAATTAAACAAAAAGccc > 2:1315470/1‑151 (MQ=255) ttCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCCGCCCTCCCCCCACCCCCCGGGGCCGTTG‑GTCGCAAACTTTAAATCCGCCCCCCGCGGGTTTTTTCCA‑CCCGGGAGAGTGTTTACCGACCCAAAAAAGATAAAACaaaaaacccc > 2:1080557/1‑145 (MQ=255) tCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCa < 1:69514/150‑1 (MQ=255) tCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCa < 2:316115/150‑1 (MQ=255) tCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCCCCCTCC‑CGGCCGTTGCTTCGCAACGTTTAAATCCGCCCCCCGCGGGTTTGTCCTA‑CTCGGGGGAGGGTTTACCGACCAACAACAGATAAAACAAAAAGccc > 1:1013634/1‑149 (MQ=14) gCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTc < 2:494658/151‑1 (MQ=40) cTTGATTTGATGTCTGGCAGTTTATGGCGGGGGTCCTGCCCCCCCCCCCCC‑CGGCCGTTGCTTTGCAAAGTTCCAATCCGCTCCCCGCGGGTTTTTCCCC‑CTCGCGGGAGGGTTTAACCACCAACAACACAAAAAAAAAAAAGccccggct > 1:1066421/1‑146 (MQ=255) tgatttgatGTCTGGCAGTTTATGGCGGGCGGCCCGCCCCCCACCCTCC‑CGGCCCGTGCTTCCCAAAGTTCAAAACCGCTCCCCGCGGGTTTTTCCTA‑CTCGGGGGAGGGTTCACCCACAAAACACAGATAAAAAAAAAAGCCCAGCCttt > 2:160893/1‑150 (MQ=255) gatttgatGTCTGGCAGTTTATGGCGGGCGTGCTGCCCGCCCCCCTCC‑GGGCCGGTGCTTCGCACCCTTCAAATCCCCCCCCCGCGGGTTTTTCCTT‑ATCGGGAGAAGGGTTTCCGACAAACCACAGGTAAAACAAAAAGCCCAGCCTTcc > 2:53350/1‑151 (MQ=255) atttgatGTCTGGCAGTTTATGGCGGGCGGCCCGCCCCCCCCCCCCC‑CGGGCGTTGCTTTGCAACGTTCCAATCCGCCCCCCGCGGGTTTTTCCTT‑CTCCGGGGGGGGGTTTCCCACCAAAAACAGATAAAAAAAAAAGCCCCGGCtttcc > 1:651382/1‑148 (MQ=255) ttgatGTCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCACCCCCC‑CGGCCGCTGCTTTGCAACGTTCAAATCCGCCCCCCGCGGGTTTTTCCTT‑CTCGGGAGAGGGTTTACCGACAAACAACAAATAAAACAAAAAGGCCAGTCTTCCgcc > 1:1356325/1‑149 (MQ=11) gatGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTg < 2:276260/151‑1 (MQ=38) gatGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTg < 2:719173/151‑1 (MQ=38) gatGTCTGGCAGTTTATGGCGGGCCTCCTGCCCGCCCCCCCCC‑CGGCCGGTGCTTCCCAAAGTTCCAAACCCCCCCCCGCGGGTTTTTCCTC‑CTCCGGGGAGGGGTCACCCACAAACAACAGATAAAAAAAAAAACCCCGCCCTCCGACTg > 1:243009/1‑151 (MQ=255) atGTCTGGCAGTTTATGGCGGGTGTCCTGCCCGCCACCCCCC‑CCGCCGTTGCTTTTCCAACTTCCAAACCGCTCCCCGCGGCGTTGTCCTC‑CTCCGGAGAGGGTTCCCCCACAAACAACAGGAAAAACAAAAAACCCAGACTTCCGACTgt > 1:493966/1‑150 (MQ=255) atGTCTGGCAGTTTATGGCGGGCGTCCCGCCCGCCACCCTCC‑CGGCCGGTTCTTCGCAAAGTTCAAATCCGCTCCCCGCGGGTTTGTCCTA‑CTCGGGAGAGTGTTCACCGACAAACAAAAGATAAAAAAAAAAGCCCAGGCTTCCGACTg > 2:678604/1‑150 (MQ=14) ggCAGTTTATGGCGGGCGTCCTGCCCGCCCCCCCCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCCCCCCCCGCGGGTTTTTCCTA‑CTCGGGAGAGTGTTCACCGACAAACAAAAGATAAAAAAAAAAGCCCACTCTTCCGGCTGAGCCttt > 1:649892/1‑151 (MQ=11) ggCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGcc < 1:893363/148‑1 (MQ=35) ggCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCt < 1:942864/149‑1 (MQ=35) cAGTTTATGGCGGGCGTCCTGCCCCCCCCCCCCC‑GGGCCGGTTCTTCGCAAACGTCAAATCCCCTCCCCGCGGGTTTGTCCTT‑CTCCGGAGAGGGTTCACCGACAAACAACAGATAAAACAAAAAGCCCAGGCTTCCCACTGAGCCttttt > 1:231162/1‑150 (MQ=11) ttATGGCGGGCGTCCTGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGttt < 1:655845/150‑1 (MQ=38) tATGGCGGGCGTCCTGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGtttt < 1:600799/150‑1 (MQ=38) tATGGCGGGCGTCCTGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGtttt < 2:745547/150‑1 (MQ=38) aTGGCGGGCGTCCTGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTAt < 1:145911/151‑1 (MQ=38) ggcgggcgTCCTGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTAttt > 1:1034494/1‑151 (MQ=38) ggcgggcgTCCTGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTAttt < 1:1173375/151‑1 (MQ=38) ggcgggcgTCCTGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTAttt < 2:865720/151‑1 (MQ=38) ggcgggcgTCCTGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTAtt < 1:440813/150‑1 (MQ=38) gggcgTCCTGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGAt < 1:903837/151‑1 (MQ=38) ccTGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTgg > 2:420094/1‑151 (MQ=40) ccTGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTg < 2:942824/150‑1 (MQ=40) tGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGc > 2:1038915/1‑150 (MQ=40) tGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGc > 2:1116312/1‑150 (MQ=40) ccGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGtt < 1:444967/151‑1 (MQ=40) gCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTcc < 1:932835/151‑1 (MQ=40) gCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTcc > 2:122096/1‑151 (MQ=40) gCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTcc > 1:151322/1‑151 (MQ=40) ccTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTAct < 1:1084685/151‑1 (MQ=40) c‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCg > 2:1123640/1‑151 (MQ=40) | AATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCC‑GGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTA‑CTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCG > NC_000913/3423151‑3423446 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |