Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_00091329,4860CA47.7% 133.3 / 68.5 109intergenic (+291/‑165)dapB/carAdihydrodipicolinate reductase/carbamoyl phosphate synthetase small subunit, glutamine amidotransferase
Reads supporting (aligned to +/- strand):  ref base C (39/18);  new base A (0/52);  total (39/70)
Fisher's exact test for biased strand distribution p-value = 6.97e-16
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 112 total aligned reads displayed.

TTTTGTTGTTTTAATGTAAATTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAAGTGAGTGAAT  >  NC_000913/29337‑29633
                                                                                                                                                        |                                                                                                                                                   
ttttGTTGTTTTAATGTAAATTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGAGCcac                                                                                                                                                     <  1:498495/150‑1 (MQ=255)
 tttGTTGTTTTAATGTAAATTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGAGCcaca                                                                                                                                                    <  2:400075/150‑1 (MQ=255)
   tgttgtTTTAATGTAAATTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTTTAAAACATGCATGAGCCACaaa                                                                                                                                                  <  2:594188/150‑1 (MQ=255)
   tgttgtTTTAATGTAAATTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGAGCCACaaa                                                                                                                                                  <  1:576682/150‑1 (MQ=255)
   tgttgtTTTAATGTAAATTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGAGCCACaaa                                                                                                                                                  <  2:732347/150‑1 (MQ=255)
        ttttAATGTAAATTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGAGCCACAAaataat                                                                                                                                             >  1:1214378/1‑150 (MQ=255)
         tttAATGTAAATTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGAGCCACAAAataata                                                                                                                                            <  2:681959/150‑1 (MQ=255)
         tttAATGTAAATTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGAGCCACAAAATAatat                                                                                                                                           >  2:1396526/1‑151 (MQ=255)
         tttAATGTAAATTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGAGCCACAAAATAatat                                                                                                                                           >  1:1306208/1‑151 (MQ=255)
          ttAATGTAAATTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGAGCCACAAAATAatat                                                                                                                                           <  2:1428086/150‑1 (MQ=255)
          ttAATGTAAATTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGAGCCACAAAATAatat                                                                                                                                           >  1:1237436/1‑150 (MQ=255)
          ttAATGTAAATTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGAGCCACAAAATAatat                                                                                                                                           <  2:1447464/150‑1 (MQ=255)
          ttAATGTAAATTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGG‑TTAGATGATCTTTTTGCCGCTTAATGC‑CTGTAAAACATGCATGAGCCACAAAATAatat                                                                                                                                           >  1:1449385/1‑150 (MQ=255)
            aaTGTAAATTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGAGCCACAAAATAATATaaa                                                                                                                                        <  1:1455460/151‑1 (MQ=255)
            aaTGTAAATTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGAGCCACAAAATAATATaa                                                                                                                                         >  1:954514/1‑150 (MQ=255)
            aaTGTAAATTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGAGCCACAAAATAATATaa                                                                                                                                         >  2:741334/1‑150 (MQ=255)
             aTGTAAATTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGAGCCACAAAATAATATaaaa                                                                                                                                       <  1:331509/151‑1 (MQ=255)
                 aaaTTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGAGCCACAAAATAATATAAAAAAt                                                                                                                                    <  2:1079045/150‑1 (MQ=255)
                 aaaTTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGAGCCACAAAATAATATAAAAAAt                                                                                                                                    <  1:1006471/150‑1 (MQ=255)
                      ttGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGAGCCACAAAATAATATAAAAAATCCCGcc                                                                                                                              >  2:613683/1‑151 (MQ=255)
                                ggTCCATTTTTTTCTGCTCTTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCTTTTTCC‑AGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGACCCACAAAATAATATAAAAAATCCCGCCATTAAGTTg                                                                                                                     <  1:1432314/150‑1 (MQ=255)
                                ggTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTg                                                                                                                     >  1:277151/1‑150 (MQ=255)
                                ggTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTg                                                                                                                     >  2:87231/1‑150 (MQ=255)
                                   ccttttttttttGCT‑TTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCTTTTTCA‑AAAACGGG‑TTAGATGATCTTTTTGCCGTTAAATGC‑CTGAAAAACATGCATGACCCAAAAAAAAATAAAAAAAATCCCGCCATTAAGTTGACttt                                                                                                                <  1:716012/147‑1 (MQ=255)
                                     aCTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACtttt                                                                                                               >  2:961334/1‑151 (MQ=255)
                                        tttttCTGCTTTTTTTTATTACATGTAATCTTCTGCCTGCCCAACCTTTTCCC‑AAAACGTT‑TAAGATTTTTTTTTTTTCACTTATTCC‑GTAAAAACCATGAATGAGCAAAAAAATAATAAAAAAAATCCCGCCATTAAGTTGACtttt                                                                                                               <  2:1159774/148‑1 (MQ=255)
                                        tttttCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAgc                                                                                                            >  1:1331954/1‑151 (MQ=255)
                                         ttttCTGCTCTTTTTTTTTTCATGCATTTTTTTTGCTGCGCAAGCTTTTCCA‑AAAACAGT‑TTAGATGATTTTTTTGTCGTTTAATCC‑CTGAAAAACATGCATGACCCAAAAAAAAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAgc                                                                                                            <  2:3324/150‑1 (MQ=255)
                                         ttttCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAgcg                                                                                                           >  2:800200/1‑151 (MQ=255)
                                          tttCTGCTCTTTTTTATTTAATGCAATCTTCTTGCTGCGCAGGCGTTTTCC‑AGAACAGT‑TTATATGATTTTTTTGTCTTTTAATCC‑CTATAAAACATGCAGGAGCCAAAAAATAATATAAAAAACCCCGCCATTAAGTTGACTTTTAgcg                                                                                                           <  2:1389853/150‑1 (MQ=255)
                                            tCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGccc                                                                                                        >  1:329903/1‑151 (MQ=255)
                                              tGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCat                                                                                                      >  2:603400/1‑151 (MQ=255)
                                               gCTCTTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCTTTTTCC‑AGAACAGG‑TTAGATGATTTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGAGCCAAAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGccc                                                                                                        <  1:1045095/148‑1 (MQ=255)
                                                  cttttttATTTCATGAATTCTTCTTGTTGCGAAAGTTTTTCCC‑AGAAAAGT‑TTAGATGTTTTTTTTGGCGCTAAAGGC‑CTGAAAAACATGAATGGCCCAAAAAATAAAAAAAAAAACCCCGCCATTAAGTTGACTTTTAGCGCCCataa                                                                                                    <  2:1031955/147‑2 (MQ=255)
                                                     ttttATTTCGTGCATTCTTTTTCCGGCGCAAGTTTTTCCG‑AGAGCGGC‑TAAGATGATCTTTTTCTCGC‑TAATGCAGTGTAAAACATCCATGAACCACAAAAAAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTcc                                                                                                <  1:399940/150‑1 (MQ=255)
                                                     ttttATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTcc                                                                                                >  2:479379/1‑150 (MQ=255)
                                                     ttttATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCA‑AGAACAGT‑TTAGATGATTTTTTTGTCGTTTAATGC‑CTGAAAAACATGCATGAGCCAAAAAATAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTcc                                                                                                <  1:1098177/150‑1 (MQ=255)
                                                      tttATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGG‑TTAGATGCTCTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGAGCCACACAATAATATAAAAAATCCTGCCTTTAAGTTGACTTTTAGCGCCCATATCTcc                                                                                                >  2:16418/1‑149 (MQ=255)
                                                        tATTCCATCCATTCTTTTTGCTGCCCAAGTTTTTCCC‑AAAAAAGT‑TTAGATAATTTTTTTGTCGTTTACTGC‑TTAAAAAAAATGCATGACCCAAAAAATAAAATAAAAAACCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGa                                                                                             <  2:1190484/150‑1 (MQ=255)
                                                           ttCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATgc                                                                                         >  1:688525/1‑151 (MQ=255)
                                                           ttCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATgc                                                                                         >  1:119780/1‑151 (MQ=255)
                                                             cATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATgccg                                                                                       >  2:1428073/1‑151 (MQ=255)
                                                                gCAATCTTCTGGCTGCGCAAGCTTTTCCC‑AGAACAGG‑TTAGATGATTTTTTTGTCGCTTAATGC‑CTGAAAAACATGCATGACCCAAAAAATAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATgccgcc                                                                                     <  1:1181169/150‑1 (MQ=255)
                                                                 aattttttttGCTGCGCAAGCTTTTCCA‑AGAACAGT‑TAAAATTATTTTTTTGTCGCTTAATCC‑CTAAAAAACATAAATGACCCAAAAAAAAATAAAAAAACCCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGt                                                                                   <  2:918289/143‑1 (MQ=255)
                                                                 aattcttctTGCGGCGCAGGCTTTTCCC‑AAAACAGG‑TAAGATAATTTTTTTGTCGTTTAATGC‑TTAAAAAACATGCATGACCCAAAAAATAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGt                                                                                   <  2:1222511/148‑1 (MQ=255)
                                                                  attcttttTGCTGCGCAAGC‑TTTTCC‑AAAACCGGTTTAGATATTTTTTTTGTCTTTTAATCC‑TTAAAAAACTTGATTGCCCCAAAAAAAAATAAAAAAACCCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGtt                                                                                  <  2:60269/149‑1 (MQ=255)
                                                                     cttcttGCTGCGCAAGCGTTTTCC‑AGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGc                                                                               >  2:1111399/1‑151 (MQ=255)
                                                                      ttcttGCTGCGCAAGCGTTTTCC‑AGAACAGG‑CTAGATGATCTTTTTGTCGCTTAATGT‑CTGTAAAACATGCATGAGCTACAAAATAATATAAAAAATCCCGTCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGc                                                                               >  2:1197320/1‑150 (MQ=255)
                                                                       tcttGCTGCGCAAGCTTTTCCC‑AGAACAGG‑TTAGATGATTTTTTTGTCGTTTAATGC‑CTGAAAAACATGCATGAGCCAAAAAATAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGcc                                                                              <  1:936399/150‑1 (MQ=255)
                                                                       tcttGCTGCGCAAGCGTTTTCC‑AGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGcc                                                                              >  1:799333/1‑150 (MQ=255)
                                                                        tttGCGGCGCAAGGGTTTGCA‑AAAACAGG‑TTAGATGTTCTTTTTGTCCCTGACAGC‑ATGAAAAGCTGGCATGGACCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCa                                                                             <  1:217675/149‑1 (MQ=255)
                                                                         ttGCTGCGCAAGCGTTTTCA‑AAAACAGG‑TTAGATGATTTTTTTGTCGTTTAATGC‑CTATAAAACATGCAGGACCCAAAAAATAATATAAAAAACCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAg                                                                            <  2:107978/150‑1 (MQ=255)
                                                                          tgctgcGCAAGCGTTTTCC‑AGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGa                                                                           >  2:861597/1‑150 (MQ=255)
                                                                           gctgcGCAAGCGTTTTCC‑AGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGaa                                                                          >  1:995368/1‑150 (MQ=255)
                                                                              gcgcAAGCGTTTTCC‑AGAACAGG‑TTAGATGATTTTTTTGTCGCTTAATGC‑TTGAAAAACATGCAGGACCCAAAAAATAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATtc                                                                      <  1:765223/151‑1 (MQ=255)
                                                                                 cAAGCGTTTTCC‑AGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATtcgtc                                                                   >  1:799974/1‑151 (MQ=255)
                                                                                 aaaGCTTTTTCA‑AAAACAGT‑TAAAATGATTTTTTTGTCGTTTAATGC‑CTGAAAAACATGCATGCGCCAAAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATtcgtc                                                                   <  1:474886/150‑1 (MQ=255)
                                                                                    gcttttcCC‑AGAACGGT‑TTAAATGATTTTTTTGTCGTTTAATGC‑TTGAAAAACATGCATGAGCCAAAAAATAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGt                                                                <  1:293642/148‑1 (MQ=255)
                                                                                    gCGTTTTCC‑AGAACAGT‑TTAGATAATTTTTTTGTCGCTTAATGC‑CTGAAAAACATGCATGACCCAAAAAAAAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGt                                                                <  1:320888/151‑1 (MQ=255)
                                                                                      gTTTTCC‑AGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTa                                                               >  1:528614/1‑150 (MQ=255)
                                                                                       ttttCC‑AGAAAAGG‑TTAGATGATTTTTTTGTCGCTTAATGC‑CTGAAAAACATGAATGACCCACAAAATAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTa                                                               <  1:525837/149‑1 (MQ=255)
                                                                                        tttCCAAGAACAGG‑TTAGATGATTTTTTTGTCTCTTAATGC‑CTTAAAAACATGCATGCGCAAAAAAAAAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTa                                                               <  2:642164/149‑1 (MQ=255)
                                                                                        ttccc‑AAAACAGG‑TTAGATGATTTTTTTGTCGCTTAAGGC‑CTGTAAAACATGAAGGACCAAAAAAATAATAAAAAAAACCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAg                                                             <  2:1401524/147‑1 (MQ=255)
                                                                                           cc‑AGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGc                                                            >  1:1043225/1‑148 (MQ=255)
                                                                                              aGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTGAAAAACATGCATGAGCCAAAAAATAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGAtt                                                       <  1:492897/151‑1 (MQ=255)
                                                                                                 aCAGG‑TTAGATGATTTTTTTGTCTTTTAAGCC‑CTAAAAAACATCCATGAGCCAAAAAATAAAAAAAAAAACCCCGCCATTAAGTTGACGTTTAGCGCCCATATCTCCAGAATGCCGAAGGTTGCCAGAAATTCGTCGGTAAGCAGATTTGc                                                    <  2:1369118/151‑1 (MQ=255)
                                                                                                  cAGG‑TTAGATATTTTTTTTGTCGTTTAATGC‑CTGAAAAACATGCATGAGCCAAAAAATAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCa                                                   <  2:378740/151‑1 (MQ=255)
                                                                                                   aGG‑TTAGATGATTTTTTTGTCGTTTAATGC‑CTGAAAAACATGCATGAGCCAAAAAAAAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCAt                                                  <  2:1437486/151‑1 (MQ=255)
                                                                                                    gg‑TGAGATGATTTTTTTGTCGCTTAACGC‑AATAAAAACATGAATGGACCAAAAAATATTAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCAtt                                                 <  2:1333948/151‑1 (MQ=255)
                                                                                                     g‑TTAGATGATTTTTTTGTCGCTTAATGC‑TTGAAAAACATGCATGAGCCAAAAAATAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTg                                                <  1:775579/151‑1 (MQ=255)
                                                                                                     g‑TTAGATGATTTTTTTGTCGCTTAATGC‑CTGAAAAACATGCATGACCCAAAAAATAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTg                                                <  1:107045/151‑1 (MQ=255)
                                                                                                           atgatTTTTTTTTCGCTTAATGC‑TTGTAAAACATGCTTGAGCCAAAAAAAAATAAAAAAACTCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTa                                           <  2:383324/151‑1 (MQ=255)
                                                                                                             gttttttttGTCGTTTAATCC‑CTAAAAAAAATGCATGAGCCAAAAAATAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTAc                                          <  2:3773/146‑1 (MQ=255)
                                                                                                             gatTTTTTTGCCGCTAAATGC‑CTGAAAAACATCCATGACCCAAAAAATAAAAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTAc                                          <  1:440094/150‑1 (MQ=255)
                                                                                                                ttttttGCCGTTTAATGC‑CTGAAAAACATGCATGAGCCAAAAAATAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGtc                                       <  1:1386366/149‑1 (MQ=255)
                                                                                                                   tttGTCGTTTAATGC‑CTGTAAAACATGCATGACCCAAAAAATAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGtcatc                                    <  1:1398344/150‑1 (MQ=255)
                                                                                                                   tttGTCGATAAATGC‑CTATAAAACAGGGAGGAGCCAAAAAAAAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGtcatc                                    <  1:36435/150‑1 (MQ=255)
                                                                                                                      gTCGTTTAATGC‑TTGTAAAACATGCATGACCAAAAAAAAAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCAtt                                 <  2:633453/150‑1 (MQ=255)
                                                                                                                       tCGCTTAATGC‑TTGAAAAACATGCATGAGCCAAAAAAAAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATtg                                <  1:389372/150‑1 (MQ=255)
                                                                                                                         cctttaatcccgtaaaaaCATGCTTGACCCAAAAAATAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATtgt                               <  2:243433/136‑1 (MQ=255)
                                                                                                                          cTTAATGC‑CTGTAAAACATGCATGAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGa                             >  2:499313/1‑150 (MQ=255)
                                                                                                                           ttAATCC‑CTGAAAAACATGCATGACCCAAAAAATAATAAAAAAAACCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGaa                            <  2:257177/150‑1 (MQ=255)
                                                                                                                            tattGC‑CTGAAAAACATGCATGAGCCAAAAAATAATATAAAAATTCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGTAGATTTGCATTGATTTACGTCATCATTGTGaa                            <  1:1269147/146‑1 (MQ=255)
                                                                                                                            aaaTGC‑CTATAAAACAGGCATAGGCCACAAAAAAAAAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAAt                           <  1:892332/149‑1 (MQ=255)
                                                                                                                             aaatcccttaaaaaCATGCATAGCCCAAAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAAtt                          <  1:60234/141‑1 (MQ=255)
                                                                                                                                     gaaaaaCATGCATGAGCCAAAAAATAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATg                    <  2:1360531/147‑1 (MQ=255)
                                                                                                                                       aaacCATGCATGGGCCACAAAATAAAAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCaaa                <  2:657170/151‑1 (MQ=255)
                                                                                                                                       aaaaCATGCATGAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCaa                 >  2:722717/1‑150 (MQ=255)
                                                                                                                                        aaaCATGCATGAGCCAAAAAATAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAAt               <  2:131033/151‑1 (MQ=255)
                                                                                                                                          aCATGCATGAGCCAAAAAATAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATaa             <  1:643788/151‑1 (MQ=255)
                                                                                                                                           catgcatgAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATaa             >  2:1114818/1‑150 (MQ=255)
                                                                                                                                            ttgcatgGCCCAAAAAATAATATAAAAAACCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATaa             <  1:707575/148‑1 (MQ=255)
                                                                                                                                             ggcggaggCCCCAAAAAAATAAAAAAAACCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATaaa            <  2:1449388/142‑1 (MQ=255)
                                                                                                                                              gcatgAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAagtg         >  1:865349/1‑151 (MQ=255)
                                                                                                                                                atgAGCCACAAAATAATAAAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAagtgag       <  1:851136/151‑1 (MQ=255)
                                                                                                                                                  gacccAAAAAAAAATAAAAAAAACCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAagtgagtg     <  1:74587/148‑1 (MQ=255)
                                                                                                                                                   acccAAAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAAgtgagtga    <  1:1273842/149‑1 (MQ=255)
                                                                                                                                                    gCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAAgtgagtga    >  1:249987/1‑150 (MQ=255)
                                                                                                                                                     ccACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAAGTGAGTGAat  >  2:1005395/1‑151 (MQ=255)
                                                                                                                                                      cacaAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAAGTGAGTGAat  >  2:1313847/1‑150 (MQ=255)
                                                                                                                                                        |                                                                                                                                                   
TTTTGTTGTTTTAATGTAAATTTTGACCATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCC‑AGAACAGG‑TTAGATGATCTTTTTGTCGCTTAATGC‑CTGTAAAACATGCATGAGCCACAAAATAATATAAAAAATCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAAGTGAGTGAAT  >  NC_000913/29337‑29633

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑