Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,599,861	(T)8→7	intergenic (‑101/‑45)	dapA ← / → gcvR	dihydrodipicolinate synthase/transcriptional repressor, regulatory protein accessory to GcvA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,599,854	0	T	.	100.0%	252.8 / NA	54	intergenic (‑94/‑52)	dapA/gcvR	dihydrodipicolinate synthase/transcriptional repressor, regulatory protein accessory to GcvA
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base . (35/19);  total (35/19)

GACATTACCTTTTTCATCCATCGGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGACACTGTCATCGCAACATTATCTGGTGATCACTGCGTTGGGTGCCGATCGCCCTGGAATTGTGAACACCATCACCCGTCATGTCAGTAGT  >  NC_000913/2599704‑2599998                                                                                                                                                       |                                                                                                                                                 gacaTTACCTTTTTCATCCATCGGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGt                                                                                                                                                  >  2:694281/1‑151 (MQ=255)   caTTACCTTTTTCATCCATCGGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGttt                                                                                                                                                >  2:546661/1‑151 (MQ=255)           ttttCATCCATCGGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGtttttttatgc                                                                                                                                        <  2:119965/151‑5 (MQ=255)           ttttCATCCATCGGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGtttttttatgc                                                                                                                                        <  1:572841/151‑5 (MQ=255)                     tcGGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAg                                                                                                                             >  2:81137/1‑151 (MQ=255)                        gAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGaa                                                                                                                           >  1:11732/1‑150 (MQ=255)                        gAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGaa                                                                                                                           <  1:245008/150‑1 (MQ=255)                        gAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGaa                                                                                                                           >  2:151520/1‑150 (MQ=255)                        gAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGaa                                                                                                                           >  2:736465/1‑150 (MQ=255)                              cAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCa                                                                                                                    >  2:499159/1‑151 (MQ=255)                                  cgcgACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCAcccc                                                                                                                <  1:226935/151‑1 (MQ=255)                                         aTACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAgg                                                                                                         <  2:279642/151‑1 (MQ=255)                                                    gAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGtt                                                                                              >  2:37752/1‑151 (MQ=255)                                                    gAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGtt                                                                                              >  2:405824/1‑151 (MQ=255)                                                    gAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGtt                                                                                              >  2:429891/1‑151 (MQ=255)                                                     aaCATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGttt                                                                                             >  2:153058/1‑151 (MQ=255)                                                        aTGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGa                                                                                           >  1:611303/1‑150 (MQ=255)                                                         tGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGaca                                                                                         >  2:789557/1‑151 (MQ=255)                                                          gggCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGaca                                                                                         >  2:312605/1‑150 (MQ=255)                                                           ggCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGacac                                                                                        <  1:165106/150‑1 (MQ=255)                                                            gCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGaca                                                                                         >  2:773197/1‑148 (MQ=255)                                                                 ccTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGACACTGTCAt                                                                                  >  2:569334/1‑150 (MQ=255)                                                                    ctGTGCAAACAAGTGTCTCAATGGTACGTTTGGTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGACACTGTCATCGCa                                                                              <  2:553006/151‑1 (MQ=255)                                                                      gtgCAAACAAGTGTCTCAATGGTACGTTTGGTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGACACTGTCATCGCaa                                                                             >  1:322983/1‑150 (MQ=255)                                                                      gtgCAAACAAGTGTCTCAATGGTACGTTTGGTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGACACTGTCATCGCaa                                                                             >  1:20144/1‑150 (MQ=255)                                                                               aGTGTCTCAATGGTACGTTTGGTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGACACTGTCATCGCAACATTATCTgg                                                                   >  2:779381/1‑151 (MQ=255)                                                                                 tgtCTCAATGGTACGTTTGGTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGACACTGTCATCGCAACATTATCTgg                                                                   <  2:86460/149‑1 (MQ=255)                                                                                 tgtCTCAATGGTACGTTTGGTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGACACTGTCATCGCAACATTATCTgg                                                                   <  2:326335/149‑1 (MQ=255)                                                                                   tctcAATGGTACGTTTGGTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGACACTGTCATCGCAACATTATCTGGTGa                                                                <  1:151520/150‑1 (MQ=255)                                                                                   tctcAATGGTACGTTTGGTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGACACTGTCATCGCAACATTATCTGGTGAt                                                               >  2:718487/1‑151 (MQ=255)                                                                                   tctcAATGGTACGTTTGGTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGACACTGTCATCGCAACATTATCTGGTGAt                                                               >  2:259703/1‑151 (MQ=255)                                                                                               gTTTGGTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGACACTGTCATCGCAACATTATCTGGTGATCACTGCGTTggg                                                   >  2:661824/1‑151 (MQ=255)                                                                                               gTTTGGTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGACACTGTCATCGCAACATTATCTGGTGATCACTGCGTTggg                                                   >  2:615820/1‑151 (MQ=255)                                                                                               gTTTGGTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGACACTGTCATCGCAACATTATCTGGTGATCACTGCGTTggg                                                   >  2:532989/1‑151 (MQ=255)                                                                                                    gTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGACACTGTCATCGCAACATTATCTGGTGATCACTGCGTTGGGTGCCg                                              >  1:89059/1‑151 (MQ=255)                                                                                                       tGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATG‑TTTTTTTAAGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGACACTGTCATCGCAACATTATCTGGTGATCACTGCGTTGGGTGCCGATc                                           <  1:643360/151‑1 (MQ=255)                                                                                                          cATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGACACTGTCATCGCAACATTATCTGGTGATCACTGCGTTGGGTGCCGATCGc                                         >  1:835280/1‑150 (MQ=255)                                                                                                           aTTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGACACTGTCATCGCAACATTATCTGGTGATCACTGCGTTGGGTGCCGATCGccc                                       <  2:523764/151‑1 (MQ=255)                                                                                                               aaaGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGACACTGTCATCGCAACATTATCTGGTGATCACTGCGTTGGGTGCCGATCGCCCTGGa                                   >  2:572245/1‑151 (MQ=255)                                                                                                               aaaGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGACACTGTCATCGCAACATTATCTGGTGATCACTGCGTTGGGTGCCGATCGCCCTGGa                                   >  2:548767/1‑151 (MQ=255)                                                                                                                aagcaagcAGACAGAACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGACACTGTCATCGCAACATTATCTGGTGATCACTGCGTTGGGTGCCGATCGCCCTGGaa                                  <  2:718783/151‑1 (MQ=255)                                                                                                                   catgcaGACAGAACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTTCGTAAGAACAACTAACCCCTTAAAGGAACAACCAGTTTGACACTGTCATCGCAACATTATCTGGGGATCACTGCGTTGGGTGCCGATCGCCCTGGatg                                 <  1:182337/146‑3 (MQ=255)                                                                                                                   caagcaGACAGAACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGACACTGTCATCGCAACATTATCTGGTGATCACTGCGTTGGGTGCCGATCGCCCTGGAAt                                 <  2:453854/149‑1 (MQ=255)                                                                                                                   caagcaGACAGAACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGACACTGTCATCGCAACATTATCTGGTGATCACTGCGTTGGGTGCCGATCGCCCTGGAAt                                 <  1:504690/149‑1 (MQ=255)                                                                                                                       cagacagaACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGACACTGTCATCGCAACATTATCTGGTGATCACTGCGTTGGGTGCCGATCGCCCTGGAATTGTGa                            <  2:730443/150‑1 (MQ=255)                                                                                                                             gaACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGACACTGTCATCGCAACATTATCTGGTGATCACTGCGTTGGGTGCCGATCGCCCTGGAATTGTGAACACCAt                     >  2:578583/1‑151 (MQ=255)                                                                                                                             gaACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGACACTGTCATCGCAACATTATCTGGTGATCACTGCGTTGGGTGCCGATCGCCCTGGAATTGTGAACACCAt                     >  2:580437/1‑151 (MQ=255)                                                                                                                             gaACCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGACACTGTCATCGCAACATTATCTGGTGATCACTGCGTTGGGTGCCGATCGCCCTGGAATTGTGAACACCAt                     >  2:439829/1‑151 (MQ=255)                                                                                                                              aaCCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGACACTGTCATCGCAACATTATCTGGTGATCACTGCGTTGGGTGCCGATCGCCCTGGAATTGTGAacac                        <  1:677969/147‑1 (MQ=255)                                                                                                                              aaCCGTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGACACTGTCATCGCAACATTATCTGGTGATCACTGCGTTGGGTGCCGATCGCCCTGGAATTGTGAacac                        <  2:767198/147‑1 (MQ=255)                                                                                                                                  gTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGACACTGTCATCGCAACATTATCTGGTGATCACTGCGTTGGGTGCCGATCGCCCTGGAATTGTGAACACCATCAcc                 >  2:301059/1‑150 (MQ=255)                                                                                                                                  gTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGACACTGTCATCGCAACATTATCTGGTGATCACTGCGTTGGGTGCCGATCGCCCTGGAATTGTGAACACCATCAcc                 >  1:276664/1‑150 (MQ=255)                                                                                                                                  gTTCTGATTGTTGTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGACACTGTCATCGCAACATTATCTGGTGATCACTGCGTTGGGTGCCGATCGCCCTGGAATTGTGAACACCATCAcc                 >  1:452684/1‑150 (MQ=255)                                                                                                                                         ttgttgTATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGACACTGTCATCGCAACATTATCTGGTGATCACTGCGTTGGGTGCCGATCGCCCTGGAATTGTGAACACCATCACCCGTCATGt         >  2:452370/1‑151 (MQ=255)                                                                                                                                              gtATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTCAAGGAATAACCAGTTTTACACTGTCATCGCAACATTATCTGGTGATCACTGCGTTGGGTGCCGATCGCCCTGGAATTGTGAACACCATCACCCGTCATGTCagta    >  2:394885/1‑151 (MQ=255)                                                                                                                                              gtATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGACACTGTCATCGCAACATTATCTGGTGATCACTGCGt                                                       >  1:361028/1‑100 (MQ=255)                                                                                                                                              gtATGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGACACTGTCATCGCAACATTATCTGGTGATCACTGCGt                                                       <  2:361030/100‑1 (MQ=255)                                                                                                                                                aTGCATG‑TTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGACACTGTCATCGCAACATTATCTGGTGATCACTGCGTTGGGTGCCGATCGCCCTGGAATTGTGAACACCATCACCCGTCATGTCagtagt  <  2:128708/151‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                                 GACATTACCTTTTTCATCCATCGGAGTAACAATCGCGACAATACTTCCCGTGAACATGGGCCATCCTCTGTGCAAACAAGTGTCTCAATGGTACGTTTGGTATGGCATTAAAAGCAAGCAGACAGAACCGTTCTGATTGTTGTATGCATGTTTTTTTTATGCTTTCCTTAAGAACAACTCACCCCTTAAAGGAATAACCAGTTTGACACTGTCATCGCAACATTATCTGGTGATCACTGCGTTGGGTGCCGATCGCCCTGGAATTGTGAACACCATCACCCGTCATGTCAGTAGT  >  NC_000913/2599704‑2599998

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑