| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 925901 = | 96 (0.930) | 27 (0.260) +C |
21/298 | 9.5 | 24.0% | noncoding (71/88 nt) | serW | tRNA‑Ser |
| ? | NC_000913 | = 1097399 | 76 (0.730) | intergenic (+570/+166) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
CCGTTGCCACCCATGAGGTTTGGTAGCAAAACAATTT‑GGTGAGGTGTCCGAGTGGCTGAAGGAGCACGCCTGGAAA‑GTGTGTATACGGCAACGTATCGGGGGTTCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/926008‑925901‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAACGCAGTGAGCG < NC_000913/1097399‑1097251 || cctTTGCCCCCCAGGAGGTTTGGTAGAAAAACATTTT‑GGTGGGGTGTCCGGGTGGCTGAGGGAGCCCGCCTGAAAA‑GTGTGTATACGGCAACGTAGGGGGGGTTCAAC‑CCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAG < 2:1359712/148‑1 CGTTGCCACCCAGGGGGTTGGGTAACAAAACAATTG‑GGGGGGGTGTCGGGGGGGCTGAAGGAGCCCGCCGGGAAA‑GTGTGTATACGACAACGTATGGGGGTTTCGAA‑CCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGT < 1:233380/151‑1 ggaacaaaAATTT‑GGTGAGGTGTCCGGGTGGCGGAAGGAGCACGCTGGGAAG‑GTGTGTATACGACAACGTATGGGGGGTTCAAC‑CCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTG < 2:585631/143‑1 aaAATTT‑GGGGGGGTGCCGGGGTGGCAGAAGGAGCACGCCTGAAAA‑GTGTGTATACGGAAACTTATGGGGGGTTCAAA‑CCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACA < 2:1180311/149‑1 aAATTTGGGTGGGGTGTCCGGGTGGCGAAAGGACCCCGCCTGAAAA‑GTGTGTATACGAAAACTTATCGGGGGTCCGAA‑CCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACA < 2:506969/150‑1 aagtggGGTGGGGTGTCGGGGTGGCTGAAGGACCACCCCGGAAAA‑GTGTGTATACGGAAACGTAGGGGGGGTTCAAC‑CCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTTCGTATATTGCACACA < 1:210772/145‑1 gcgggGTGGCTGAGGGAGCCCGCCTGGAAG‑GTGTTTAGCCGGAAACTTAGGGGGGGTTCAAC‑CCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAG < 2:1519449/146‑1 GAGTGGCGGAAGGAGCACGCTTGGAAA‑GTGTGTAACGGGCAACGTATGGGGGTTTCAAA‑CCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCC < 2:349646/151‑1 GTGGCGGAAGGAGCCCGCATGGAAA‑GTGTGTATACGGCAACGGAGGGGGGGTTCAAC‑CCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCG < 1:790382/151‑1 agaagggaccaGCCTGGAAAGGTGTTTATAGGGAACCTTGGGGGGGGTTCAAC‑CCCCCCCCCCCCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCG < 1:813072/140‑1 aAAGGACCCCGCCTGAAAA‑TTGTTTATCCGGCACCTTATGGGGGTTTCAAC‑CCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGG < 2:1127957/150‑1 agggagcccccggGGAAA‑GTGTGTATACGCCAACGTAGGGGGGTTTCAAC‑CCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGG < 2:1153957/138‑1 agGGAGCACGCCGGAAAA‑GTGTGTATACGGAAAGGTTGGGGGGGTTCGAC‑CCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGG < 2:1259900/149‑1 cCGCCTGAAAA‑GTGTGTATACGGCAACGTATGGGGGTTTCGAA‑CCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACA < 2:1253306/150‑1 cgctgGGAAG‑GGGTGTATAGGGAAACGTTGGGGGGGTTCGAA‑CCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAA < 1:791334/146‑1 gggaAAA‑GTTTGTATACGGCAACGTGTGGGGTGTTCGAA‑CCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTG < 1:1563321/147‑1 ggaAAA‑GTGTGTATACGGAAACGTATGGGGGGTTCGAA‑CCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGG < 2:3431/148‑1 aaagtTGTGTATCCGGCACGTTATGGGGGTTTCAAA‑CCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCG < 2:1385638/146‑1 TATACGGCAACGTAGGGGGGTTTCGAA‑CCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAG < 2:1365693/150‑1 TATACGGAAACTTATGGGGGGTCCAAC‑CCCCCCCCCCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAG < 2:1230285/150‑1 gtatGGGGGTTCCAACCCCCCCCCCCCCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCG < 2:494013/147‑1 gggaGGGGATCAAC‑CCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTG < 1:1580182/147‑1 gGGGGGTTCAAA‑CCCCCCCCCCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGC‑‑TTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTAGCGACAGCCAGTTGGACAGACCGTGAAC < 1:369072/150‑1 gggggcgtaacCCCCCCCCCTACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGCCCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAAC < 1:1557114/140‑1 gattcAA‑CCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAACGCAG < 2:1607790/146‑1 tcaacCCCCCCCCTCCCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAACGCAGT < 2:1260363/145‑1 tcAA‑CCCCCCCCCCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAACGCAGTG < 1:434214/148‑1 CGAA‑CCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAACGCAGTG < 2:358461/150‑1 caacCCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAACGCAGTG < 2:1103242/146‑1 aAA‑CCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAACGCAGTGAG < 2:650276/150‑1 tacCCCCCCCGTCGCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAACGCAGTGA < 1:1570821/147‑1 aacCCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAACGCAGTGAG < 1:919989/148‑1 ccCCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAACGCAGTGAGC < 1:939621/149‑1 acCCCCCCCCTCTCCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAACGCAGTGAGC < 1:207641/149‑1 cCCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAACGCAGTGAGCG < 2:1398052/150‑1 || CCGTTGCCACCCATGAGGTTTGGTAGCAAAACAATTT‑GGTGAGGTGTCCGAGTGGCTGAAGGAGCACGCCTGGAAA‑GTGTGTATACGGCAACGTATCGGGGGTTCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/926008‑925901‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGC‑TTTTTTTTCGTATATTGCACACACCGGGGGGATGAGAAGCCCCGACCGGGGTTCGACAACTGGCGACAGCCAGTTGGACAGACCGTGAACGCAGTGAGCG < NC_000913/1097399‑1097251 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |