New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 2661788 =142 (1.100)4 (0.040) 4/222 NT 3.3% intergenic (‑181/‑140) USA300HOU_2514/USA300HOU_2515 HAD superfamily hydrolase/ABC superfamily ATP binding cassette transporter, ABC protein
?CP000730 2661832 = 109 (0.970)intergenic (‑225/‑96) USA300HOU_2514/USA300HOU_2515 HAD superfamily hydrolase/ABC superfamily ATP binding cassette transporter, ABC protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 156 total aligned reads displayed.

ATATTCACATTTTGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATAACTATTCTTTAAAAGTTAAAAACAAACAACT  >  CP000730/2661694‑2661971
                                                                                                                                            |                                                                                                                                           
atatTCACATTTTGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACt                                                                                                                                           <  1:1289665/141‑1 (MQ=255)
   caactcctatgtataaagggatttattacaccgatatttaattgtatttttaaaaattctttcacattatgtatagatgttataaattagtATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAAt                                                                                                                                        >  1:98176‑M1/92‑141 (MQ=255)
     cacaTTTTGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAAttt                                                                                                                                      <  2:557046/141‑1 (MQ=255)
       caTTTTGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTtat                                                                                                                                    <  1:28530/141‑1 (MQ=255)
       caTTTTGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTtat                                                                                                                                    >  1:53684/1‑141 (MQ=255)
        aTTTTTAAATTGCTTTCATATATGCAAATCACATTACACTAGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTtata                                                                                                                                   <  1:356759/141‑1 (MQ=255)
        aTTTTGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTtata                                                                                                                                   >  2:1117173/1‑141 (MQ=255)
           ttGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGGACATACATATAAGTATATTCGAAGAATCGCACACTATATTTATCATTGAGA‑CG‑ATATATAGTGTGATATACTAATTTATAACa                                                                                                                                >  1:156496/1‑141 (MQ=255)
             gAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATc                                                                                                                              >  2:204108/1‑141 (MQ=255)
              aaaTTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCt                                                                                                                             >  2:173142/1‑141 (MQ=255)
               aaTTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCta                                                                                                                            >  2:1241429/1‑141 (MQ=255)
               aaTTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCta                                                                                                                            >  2:1357299/1‑141 (MQ=255)
               aaTTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCta                                                                                                                            >  2:1384409/1‑141 (MQ=255)
                  tGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATAc                                                                                                                         <  1:186790/141‑1 (MQ=255)
                   tttttCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACa                                                                                                                        >  2:490343/3‑141 (MQ=255)
                    cTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACAt                                                                                                                       <  1:994974/141‑1 (MQ=255)
                      ttCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATaa                                                                                                                     >  2:1552945/1‑141 (MQ=255)
                           atatGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGa                                                                                                                <  1:1368154/141‑1 (MQ=255)
                           atatGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGa                                                                                                                <  1:906780/141‑1 (MQ=255)
                            tatGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGaa                                                                                                               <  2:1368981/141‑1 (MQ=255)
                            tatGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGaa                                                                                                               <  1:836505/141‑1 (MQ=255)
                              tGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAg                                                                                                             >  2:1200744/1‑141 (MQ=255)
                               gCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGa                                                                                                            <  2:733097/141‑1 (MQ=255)
                                 aaaaCACATTACACTGGATATAGCATTCGGAGGCGAACATAAATTTCAGAATATTGTAAAAATATAACGATATATTTATCATTTGGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAAAAt                                                                                                          <  1:532858/141‑1 (MQ=255)
                                  aaaCACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAAtt                                                                                                         >  1:1023942/1‑141 (MQ=255)
                                  aaaCACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAAtt                                                                                                         >  1:1101997/1‑141 (MQ=255)
                                   aaCACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAAttt                                                                                                        <  2:652236/141‑1 (MQ=255)
                                       caTTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTaa                                                                                                    >  1:1347668/1‑141 (MQ=255)
                                          tACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTaaaaa                                                                                                 >  1:1019384/1‑141 (MQ=255)
                                          tACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTaaaaa                                                                                                 >  2:972349/1‑141 (MQ=255)
                                           acacTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAAt                                                                                                <  1:138557/141‑1 (MQ=255)
                                                ggATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATATATAATGTGAAAGAATTTTTAAAAATACAAt                                                                                           <  2:1490927/141‑1 (MQ=255)
                                                atttttaaaaattctttcacattatgtatagatgttataaattagtATATCACACTATATTT‑TG‑TCTAAATGATAAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAAt                                                                                           <  1:228037‑M1/95‑1 (MQ=255)
                                                 gATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAAtt                                                                                          <  2:1453114/141‑1 (MQ=255)
                                                  atatAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTa                                                                                         >  2:1111444/1‑141 (MQ=255)
                                                     taGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAat                                                                                      <  1:1384409/141‑1 (MQ=255)
                                                      aGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAata                                                                                     >  2:467750/1‑141 (MQ=255)
                                                       gCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAatat                                                                                    >  2:573614/1‑141 (MQ=255)
                                                        cATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACa                                                                                             <  1:400134/131‑1 (MQ=255)
                                                        cATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATc                                                                                   >  1:842051/1‑141 (MQ=255)
                                                         aTTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCg                                                                                  <  1:1241429/141‑1 (MQ=255)
                                                          ttCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCgg                                                                                 >  2:1356420/1‑141 (MQ=255)
                                                             agagGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGgtgt                                                                              >  1:809811/1‑141 (MQ=255)
                                                                ggCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGtaat                                                                           >  2:1129712/1‑141 (MQ=255)
                                                                  cGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGtaataa                                                                         <  1:139236/141‑1 (MQ=255)
                                                                      cATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATcc                                                                     >  1:424636/1‑141 (MQ=255)
                                                                      cATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATcc                                                                     <  2:1022485/141‑1 (MQ=255)
                                                                      cATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAAGTTGAAAGAATTTTTAAAAATACAATTAAAAATCGGTGAAATAAATcc                                                                     >  2:1573351/1‑141 (MQ=255)
                                                                       aTAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATccc                                                                    >  1:1529927/1‑141 (MQ=255)
                                                                        tAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCt                                                                   <  1:393463/141‑1 (MQ=255)
                                                                         aaaTTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCtt                                                                  >  2:1625526/1‑141 (MQ=255)
                                                                         aaaTTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCtt                                                                  <  1:1334753/141‑1 (MQ=255)
                                                                          aaTTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCttt                                                                 >  1:510531/1‑141 (MQ=255)
                                                                          aaTTTCAGAATATTGTAAAAATATCACACTATATTTAGCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCttt                                                                 >  1:1197388/1‑141 (MQ=255)
                                                                            tttCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTtat                                                               >  1:129932/1‑141 (MQ=255)
                                                                            tttCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTtat                                                               <  2:82534/141‑1 (MQ=255)
                                                                             ttCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTtata                                                              <  1:1637924/141‑1 (MQ=255)
                                                                                agaaaaatatAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACAt                                                           <  2:1347668/132‑1 (MQ=255)
                                                                                  aaTATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAg                                                         >  2:1433660/1‑141 (MQ=255)
                                                                                   atatTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGAAATAAATCCCTTTATACATAgg                                                        >  1:1225336/1‑141 (MQ=255)
                                                                                      ttGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGt                                                     <  1:719732/141‑1 (MQ=255)
                                                                                       agTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGtt                                                    <  1:1205134/140‑1 (MQ=255)
                                                                                          attagtatatcacactatattttgtctaaatgataaatatagtgtgatatACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTg                                                   >  1:98176‑M2/51‑141 (MQ=255)
                                                                                          aaaaaTATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGaa                                                                                                               >  1:216041/1‑79 (MQ=255)
                                                                                          aaaaaTATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGta                                                 <  2:171239/141‑1 (MQ=255)
                                                                                          aaaaaTATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGta                                                 <  2:1005084/141‑1 (MQ=255)
                                                                                           ttagtatatcacactatattttgtctaaatgataaatatagtgtgatatACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTCAATATCGGTGTAATAAATCCCTTTATACATAGGAGATGt                                                  >  1:1392615‑M2/50‑141 (MQ=255)
                                                                                                ATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATg                                           >  2:1625758‑M1/1‑141 (MQ=255)
                                                                                                 TCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGa                                          <  1:573732‑M1/141‑1 (MQ=255)
                                                                                                 TCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGa                                          <  1:637266‑M1/141‑1 (MQ=255)
                                                                                                  CACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGaa                                         <  1:1409233‑M1/141‑1 (MQ=255)
                                                                                                  CACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGaa                                         <  1:449551‑M1/141‑1 (MQ=255)
                                                                                                       TATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTaa                                    >  2:761505‑M1/1‑141 (MQ=255)
                                                                                                        ATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTaaa                                   <  2:265792‑M1/141‑1 (MQ=255)
                                                                                                          ATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATGACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATa                                 <  1:1422100‑M1/141‑1 (MQ=255)
                                                                                                          ATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATa                                 <  2:1520707‑M1/141‑1 (MQ=255)
                                                                                                               tCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATAACTAt                            >  1:347825/1‑141 (MQ=255)
                                                                                                               tCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATAACTAt                            <  2:925962/141‑1 (MQ=255)
                                                                                                               tCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATAACTAt                            <  2:53684/141‑1 (MQ=255)
                                                                                                               tCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATAACTAt                            <  1:1268397/141‑1 (MQ=255)
                                                                                                               tCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATAACTAt                            >  2:1564984/1‑141 (MQ=255)
                                                                                                               tCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATAACTAt                            <  1:922230/141‑1 (MQ=255)
                                                                                                                cATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATAACTAtt                           <  2:510531/141‑1 (MQ=255)
                                                                                                                cATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATAACTAtt                           >  1:1434543/1‑141 (MQ=255)
                                                                                                                  tttAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATAACTATTCt                         <  2:941448/141‑1 (MQ=255)
                                                                                                                  tttAAA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATAACTATTCt                         <  2:605161/141‑1 (MQ=255)
                                                                                                                     aGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATAACTATTCTTTa                      <  1:739749/141‑1 (MQ=255)
                                                                                                                     aGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATAACTATTCTTTa                      >  1:515726/1‑141 (MQ=255)
                                                                                                                      gA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATAACTATTCTTTaa                     <  2:769168/141‑1 (MQ=255)
                                                                                                                          a‑aaaTATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATAACTATTCTTTAAAAg                  >  1:906259/1‑141 (MQ=255)
                                                                                                                             aatatagtgtgatatACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATAACTATTCTTTAAAAGtt                >  2:843314‑M2/16‑141 (MQ=255)
                                                                                                                             aatatagtgtgatatACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATAACTATTCTTTAAAAGtt                >  2:363504‑M2/16‑141 (MQ=255)
                                                                                                                              atatAGAGTGGTCTACTGCTTTATAAAATCCCTACATAATGCGAAAGCCTTTTTAAAAATAAAATTAAATATCGGCGTAATAAATCCCTTTATACATAGGAGTTGTATACCTGAAACCAACTAAGTATAATATAAAAGTTa               >  2:571079/1‑141 (MQ=255)
                                                                                                                               tatagtgtgatatACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATAACTATTCTTTAAAAGTTaa              >  1:449604‑M2/14‑141 (MQ=255)
                                                                                                                                atagtgtgatatACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATAACTATTCTTTAAAAGTTaaa             <  1:228675‑M2/129‑1 (MQ=255)
                                                                                                                                  agtgtgatatACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATAACTATTCTTTAAAAGTTaaaaa           >  1:1062223‑M2/11‑141 (MQ=255)
                                                                                                                                   gtgtgatatACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATAACTATTCTTTAAAAGTTAAaaac          <  2:1264356‑M2/132‑1 (MQ=255)
                                                                                                                                    tgtgatatACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATAACTATTCATTAAAAATTAAaaaca         <  2:1101997‑M2/133‑1 (MQ=255)
                                                                                                                                       gatatACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATAACTATTCTTTAAAAGTTAAaaacaaac      <  2:1560338‑M2/136‑1 (MQ=255)
                                                                                                                                          atACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATAACTATTCTTTAAAAGTTAAAAACAaacaac   >  2:167405‑M2/3‑141 (MQ=255)
                                                                                                                                            |                                                                                                                                           
ATATTCACATTTTGAAATTGCTTTCATATATGCAAAACACATTACACTGGATATAGCATTCAGAGGCGAACATAAATTTCAGAATATTGTAAAAATATCACACTATATTTATCATTTAGA‑CA‑AAATATAGTGTGATATACTAATTTATAACATCTATACATAATGTGAAAGAATTTTTAAAAATACAATTAAATATCGGTGTAATAAATCCCTTTATACATAGGAGTTGTATACATGAAACTAAATAACTATTCTTTAAAAGTTAAAAACAAACAACT  >  CP000730/2661694‑2661971

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.