Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 2,680,166 T→C 9.6% intergenic (+218/+314) cbpD → / ← USA300HOU_2537 possible secretory antigen/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007302,680,1660TC 9.6% 452.0 / 30.0 156intergenic (+218/+314)cbpD/USA300HOU_2537possible secretory antigen/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (72/68);  new base C (7/8);  total (80/76)
Fisher's exact test for biased strand distribution p-value = 7.90e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01

Only 100 of 169 total aligned reads displayed.

TTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCAAAACCTTTATCCCCTTTTCACTCGGTTTAATTGCTTT  >  CP000730/2680026‑2680305
                                                                                                                                            |                                                                                                                                               
ttaCTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGatat                                                                                                                                                 <  1:1192155/141‑1 (MQ=255)
 taCTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGAtata                                                                                                                                                <  1:1439507/141‑1 (MQ=255)
           aaTTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTc                                                                                                                                      >  2:1586601/1‑141 (MQ=255)
           aaTTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTc                                                                                                                                      <  1:636426/141‑1 (MQ=255)
            aTTTCACATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCt                                                                                                                                     <  1:91363/141‑1 (MQ=255)
                   aTTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAAtctc                                                                                                                              >  1:68581/1‑141 (MQ=255)
                    ttGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑a                                                                                                                            <  2:204644/141‑1 (MQ=255)
                     tGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑aa                                                                                                                           <  2:599608/141‑1 (MQ=255)
                     tGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑aa                                                                                                                           <  2:253245/141‑1 (MQ=255)
                       ccGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑aata                                                                                                                         <  1:375561/141‑1 (MQ=255)
                        cGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑aataa                                                                                                                        <  1:1246575/141‑1 (MQ=255)
                           aaTTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAAttt                                                                                                                     <  2:274213/141‑1 (MQ=255)
                             ttGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAAttttt                                                                                                                   >  2:1617949/1‑141 (MQ=255)
                               gAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAATCTTGTTCTAACTCTC‑AATAATTTTTTg                                                                                                                 >  2:969800/1‑141 (MQ=255)
                               gAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTg                                                                                                                 >  2:235035/1‑141 (MQ=255)
                                  cGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑Tg                                                                                                            >  1:562984/1‑141 (MQ=255)
                                     atatTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑ttt                                                                                                        >  1:454756/1‑141 (MQ=255)
                                      tatTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑tttt                                                                                                       <  1:1092560/141‑1 (MQ=255)
                                      tatTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑tttt                                                                                                       <  1:487667/141‑1 (MQ=255)
                                         ttcttcttcAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCAt                                                                                                    >  2:715078/1‑141 (MQ=255)
                                         ttcttcttcAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCAt                                                                                                    >  2:1020529/1‑141 (MQ=255)
                                          tcttcttcAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATc                                                                                                   <  2:108409/141‑1 (MQ=255)
                                           cttcttcAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCg                                                                                                  <  1:497559/141‑1 (MQ=255)
                                                tcAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCAtt                                                                                             >  2:839971/1‑141 (MQ=255)
                                                 cAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTa                                                                                            >  1:1384552/1‑141 (MQ=255)
                                                   aCTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTaaa                                                                                          <  2:899505/141‑3 (MQ=255)
                                                   aCTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGt                                                                                          <  1:296429/141‑1 (MQ=255)
                                                       ttattTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTaaa                                                                                      >  2:168787/1‑141 (MQ=255)
                                                          tttCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTaaaaaa                                                                                   >  2:407730/1‑141 (MQ=255)
                                                           ttCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTACATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAGTCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTaaaaaaa                                                                                  >  2:11664/1‑141 (MQ=255)
                                                           ttCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTataaaaa                                                                                  >  1:866914/1‑141 (MQ=255)
                                                             cATCTTCAGCATCGTCTAAGTTTAAAATTTTATGCTTTTGTTTAAGCAATCCACCATAACTTAACATACGTTTTCAATACAAACCTTTTTCTAAATCACTTACAATTTCTTG‑A‑TGTTTTTCGTCGTCATCAGTTaaaaagt                                                                                  <  2:1505785/141‑3 (MQ=255)
                                                              aTCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAaataa                                                                               >  1:558201/1‑141 (MQ=255)
                                                               tCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAaataat                                                                              >  1:304521/1‑141 (MQ=255)
                                                                  ttAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATGCGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAGTTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTa                                                                           <  2:580602/141‑1 (MQ=255)
                                                                   tAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTaa                                                                          >  2:1167476/1‑141 (MQ=255)
                                                                    aGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAAc                                                                         <  2:1451932/141‑1 (MQ=255)
                                                                    aGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAAc                                                                         <  1:715078/141‑1 (MQ=255)
                                                                     gCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACt                                                                        >  2:213103/1‑141 (MQ=255)
                                                                      cATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTg                                                                       >  1:213931/1‑141 (MQ=255)
                                                                      cATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTg                                                                       <  1:355287/141‑1 (MQ=255)
                                                                          aTCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGAAAAAAAAAAAAAAAATAATTTAACTGAGtt                                                                   <  2:1383180/141‑1 (MQ=255)
                                                                           tCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGttt                                                                  >  1:607231/1‑141 (MQ=255)
                                                                            ctaagtttaAAATTTTATGTTTTTGTTTAAGCAATCCACCATAACTTAACATACGTTTTCGATACAAACCTTTTTCTa                                                                                                                                    >  1:1154241/8‑78 (MQ=255)
                                                                            ctaagtttaAAATTTTATGTTTTTGTTTAAGCAATCCACCATAACTTAACATACGTTTTCGATACAAACCTTTTTCTa                                                                                                                                    <  2:1154241/71‑1 (MQ=255)
                                                                               tatataAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTga                                                              <  2:726363/141‑1 (MQ=255)
                                                                               tatataAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTga                                                              >  2:449008/1‑141 (MQ=255)
                                                                                  ataAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGAc                                                           <  2:1246966/141‑1 (MQ=255)
                                                                                    aaaaTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTgagtctt                                                         >  2:626772/1‑137 (MQ=255)
                                                                                    aaaaTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCt                                                         >  1:250944/1‑141 (MQ=255)
                                                                                     aaaTTTTATGCTTTTGTTTAAGCAATCCACCATAACTTAACATACGTTTTCGATACAAACCtt                                                                                                                                          >  2:972062/1‑63 (MQ=255)
                                                                                     aaaTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTg                                                        >  1:916343/1‑141 (MQ=255)
                                                                                      aaTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGt                                                       <  2:952797/141‑1 (MQ=255)
                                                                                      aaTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGt                                                       <  1:488969/141‑1 (MQ=255)
                                                                                      aaTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGt                                                       <  1:1010416/141‑1 (MQ=255)
                                                                                      aaTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGt                                                       <  1:1456019/141‑1 (MQ=255)
                                                                                      aaTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGt                                                       <  1:636682/141‑1 (MQ=255)
                                                                                       aTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGtt                                                      >  1:1482200/1‑141 (MQ=255)
                                                                                       aTTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGtt                                                      <  1:1428489/141‑1 (MQ=255)
                                                                                            aTGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAAt                                                 >  1:1009418/1‑141 (MQ=255)
                                                                                             tGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAAtt                                                >  1:367204/1‑141 (MQ=255)
                                                                                              gCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATtg                                               <  2:1522368/141‑1 (MQ=255)
                                                                                                 attattTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATtgatg                                            >  2:1216465/1‑141 (MQ=255)
                                                                                                     tttAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTc                                        <  1:839971/141‑1 (MQ=255)
                                                                                                      ttAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCa                                       <  1:467603/141‑1 (MQ=255)
                                                                                                       tAAATAATTCGCTATAACTTAACATACGTTTTCGATAGAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATAGTAATGAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCaa                                      >  1:1194630/1‑141 (MQ=255)
                                                                                                        aaaTAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCaaa                                     <  2:563686/141‑1 (MQ=255)
                                                                                                         aataatTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCaaaa                                    >  2:687181/1‑141 (MQ=255)
                                                                                                         aataatTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCaaaa                                    >  2:907831/1‑141 (MQ=255)
                                                                                                         aataatTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCaaaa                                    >  1:1545211/1‑141 (MQ=255)
                                                                                                          ataatTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCAAAAc                                   >  1:1050926/1‑141 (MQ=255)
                                                                                                              ttCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCAAAACCttt                               >  2:342827/1‑141 (MQ=255)
                                                                                                               tCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCAAAACCTTTa                              >  1:967122/1‑141 (MQ=255)
                                                                                                               tCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCAAAACCTTTa                              >  1:814959/1‑141 (MQ=255)
                                                                                                                 gCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTT‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCAAAACCTTTATc                            >  2:1628181/1‑141 (MQ=255)
                                                                                                                   cataACTTAACATACGTTTTCGATACAAACCTTTTTCTAAAtcact                                                                                                                             >  2:973650/2‑43 (MQ=255)
                                                                                                                   cataACTTAACATACGTTTTCGATACAAACCTTTTTCTAAAtcact                                                                                                                             <  1:973650/45‑4 (MQ=255)
                                                                                                                   cataACTTAACATACGTTTTCGATACAAACCTTTTTCTAAAtcact                                                                                                                             <  1:973598/45‑4 (MQ=255)
                                                                                                                     taACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCAAAACCTTTATCCCCt                        >  1:1370492/1‑141 (MQ=255)
                                                                                                                     taACTTAACATACGTTTTCGATACAAACCTTTTTCTAAATCACTTACAATTTCTTGAT‑TT‑TTTTCGTCGTCATCAGTTaaaaagtcag                                                                               <  2:709141/88‑6 (MQ=255)
                                                                                                                     taACTTAACATACGTTTTCGATACAAACCTTTTTCTAAATCACTTACAATTTCTTG‑ATTT‑TTTTCGTCGTCATCAGTTaaaaagtcag                                                                               >  1:709141/1‑83 (MQ=255)
                                                                                                                       aCTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCAAAACCTTTATCCCCttt                      <  2:1578654/141‑1 (MQ=255)
                                                                                                                       aCTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCAAAACCTTTATCCCCttt                      <  1:243159/141‑1 (MQ=255)
                                                                                                                        cTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTA‑CCTAATTGTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCAAAACCTTTATCCCCtttt                     <  1:15094/141‑1 (MQ=255)
                                                                                                                           aaCATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCAAAACCTTTATCCCCTTTTCAc                  <  2:1351427/141‑1 (MQ=255)
                                                                                                                            aCATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCAAAACCTTTATCCCCTTTTCCCt                 >  2:1276469/1‑141 (MQ=255)
                                                                                                                            aCATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCAAAACCTTTATCCCCTTTTCACt                 >  1:1141944/1‑141 (MQ=255)
                                                                                                                            aCATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCAAAACCTTTATCCCCTTTTCACt                 <  2:683928/141‑1 (MQ=255)
                                                                                                                             cATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCAAAACCTTTATCCCCTTTTCACTc                >  1:677625/1‑141 (MQ=255)
                                                                                                                                 cGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTTAGACCTGTTTAAATTGATGACTCAAAACCTTTATCCCCTTTTCACTCGGtt            <  2:1075343/141‑1 (MQ=255)
                                                                                                                                 cGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCAAAACCTTTATCCCCTTTTCACTCGGtt            >  1:1642241/1‑141 (MQ=255)
                                                                                                                                 cGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCAAAAACTTTATCCCCTTTTCACTCGGtt            >  1:850694/1‑141 (MQ=255)
                                                                                                                                         atatAATCCTTGTTCTATATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATAACTCAAAACCATTATCCCCTTTTCGCTCGGTTTAATTGCt    <  2:947896/141‑1 (MQ=255)
                                                                                                                                         atatAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCAAAACCTTTATCCCCTTTTCACTCGGTTTAATTGCt    >  1:483368/1‑141 (MQ=255)
                                                                                                                                           ataAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAGAATAATTTAACGGAGGTGTTGAGAGCTGTTTAAATTGATGACTCAAAACCTTTATCCCCTTTTCACTCGGTTTAATTGCttt  >  1:157046/1‑141 (MQ=255)
                                                                                                                                           ataAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGTCCTGTTTAAATTGATGACTCAAAACCTTTATCCCCTTTTCACTCGGTTTAATTGCttt  <  1:198573/141‑1 (MQ=255)
                                                                                                                                           ataAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCAAAACCTTTATCCCCTTTTCACTCGGTTTAATTGCttt  <  1:168787/141‑1 (MQ=255)
                                                                                                                                           ataAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCAAAACCTTTATCCCCTTTTCACTCGGTTTAATTGCttt  <  2:1445811/141‑1 (MQ=255)
                                                                                                                                           ataAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGAAAAAAAAAAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCAAAACCTTTATCCCCTTTTCACTCGGTTTAATTGCttt  <  2:1531342/141‑1 (MQ=255)
                                                                                                                                           ataAACCGTGTTCTAAATCTC‑AATAAATTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAACATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCAAAACCTTTATCCCCTTTTCACTCGGTTTAATTGCttt  <  2:1150678/141‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                               
TTACTTCTACAAATTTCAAATTGCCGTAATTGAACGTATATTTCTTCTTCAACTATTATTTCATCTTTAGCATAATCTATATATAAAATTTTATGCTATTATTTAAATAATTCGCTATAACTTAACATACGTTTTCGATATAAACCTTGTTCTAAATCTC‑AATAATTTTTTG‑C‑TG‑TTTTCATCGTCATTAGTTAAAAAAATAATTTAACTGAGTTTTTGAGACCTGTTTAAATTGATGACTCAAAACCTTTATCCCCTTTTCACTCGGTTTAATTGCTTT  >  CP000730/2680026‑2680305

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑