New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1097237 =	43 (0.920)	8 (0.190)	8/246	4.6	15.6%	intergenic (+11/‑122)	cydB/ktrC	cytochrome d ubiquinol oxidase subunit II/possible Trk family potassium (K+) transporter, NAD+ binding protein
	?	CP000730	1097291 =	47 (1.090)					intergenic (+65/‑68)	cydB/ktrC	cytochrome d ubiquinol oxidase subunit II/possible Trk family potassium (K+) transporter, NAD+ binding protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGGCTGGACATTAGTGATTGTCTTTATTTTAGGTTTACTTTTATTACTTCCATCGTTAATATTATTATTAAGATTATTTGTTTTCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAGGGCGAGTATGGGTAAAGAATATGTA  >  CP000730/1097109‑1097376                                                                                                                                 |                                                                                                                                             gggCTTGACATTAGTGATTGTCTTTATTTTAGGTTTACTTTTATTACTTCCATCGTTAATATTATTATTAAGATTATTTGTTTTCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTc                                                                                                                                  <  2:541651/141‑1 (MQ=255) gggCTGGACATTAGTGATTGTCTTTATTTTAGGTTTACTTTTATTACTTCCATCGTTAATATTATTATTAAGATTATTTGTTTTCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTc                                                                                                                                  >  1:6649/1‑141 (MQ=255) gggCTGGACATTAGTGATTGTCTTTATTTTAGGTTTACTTTTATTACTTCCATCGTTAATATTATTATTAAGATTATTTGTTTTCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTc                                                                                                                                  <  2:445721/141‑1 (MQ=255) gagCTGGGCAGTAGTGATTGTCTTTATTTTAGGTTGACTTTTATTACTTCCATCGTTAATATTATGATTAAGATTATTTGTTTTCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTc                                                                                                                                  <  2:266546/139‑1 (MQ=255)   gCTGGACATTAGTGATTGTCTTTATTTTAGGTTTACTTTTATTACTTCCATCGTTAATATTATTATTAAGATTATTTGTTTTCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCAt                                                                                                                                >  2:535570/1‑141 (MQ=255)     tGGACATTAGTGATTGTCTTTATTTTAGGTTTACTTTTATTACTTCCATCGTTAATATTATTATTAAGATTATTTGTTTTCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCAttt                                                                                                                              <  2:6649/141‑1 (MQ=255)                     tCTTTATTTTAGGTTTACTTTTATTACTTCCATCGTTAATATTATTATTAAGATTATTTGTTTTCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCAt                                                                                                              <  2:326359/141‑1 (MQ=255)                                ggTTTACTTTTATTACTTCCATCGTTAATATTATTATTAAGATTATTTGTTTTCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑ttt                                                                                                  >  1:45481/1‑141 (MQ=255)                                     aCTTTTATTACTTCCATCGTTAATATTATTATTAAGATTATTTGTTTTCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGttt                                                                                             >  2:238451/1‑140 (MQ=255)                                        tttATTACTTCCATCGTTAATATTATTATTAAGATTATTTGTTTTCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTgggg                                                                                          <  1:391098/141‑1 (MQ=255)                                         ttattaCTTCCATCGTTAATATTATTATTAAGATTATTTGTTTTCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGt                                                                                         >  1:535666/1‑141 (MQ=255)                                                ttCCATCGTTAATATTATTATTAAGATTATTTGTTTTCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCAtt                                                                                  >  1:3712/1‑141 (MQ=255)                                                 tCCATCGTTAATATTATTATTAAGATTATTTGTTTTCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCAttt                                                                                 <  1:394215/141‑1 (MQ=255)                                                         tAATATTATTATTAAGATTATTTGTTTTCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATaataat                                                                         >  1:108557/1‑141 (MQ=255)                                                         tAATATTATTATTAAGATTATTTGTTTTCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATaataat                                                                         >  1:425547/1‑141 (MQ=255)                                                            tattattatTAAGATTATTTGTTTTCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAAtttt                                                                      >  1:451168/1‑141 (MQ=255)                                                             attattattAAGATTATTTGTTTTCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTa                                                                     >  1:306787/1‑141 (MQ=255)                                                                attattaAGATTATTTGTTTTCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAAt                                                                  >  1:453940/1‑141 (MQ=255)                                                                attattaAGATTATTTGTTTTCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAAt                                                                  >  1:158214/1‑141 (MQ=255)                                                                 ttattaAGATTATTTGTTTTCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAAtt                                                                 <  1:268413/141‑1 (MQ=255)                                                                        gATTATTTGTTTTCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATAttt                                                          <  2:593597/141‑1 (MQ=255)                                                                            attTGTTTTCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCaa                                                      >  2:497110/1‑141 (MQ=255)                                                                                 ttttCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAAt                                                 >  1:58399/1‑141 (MQ=255)                                                                                 ttttCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAAt                                                 >  1:58394/1‑141 (MQ=255)                                                                                 ttttCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAAt                                                 >  2:498656/1‑141 (MQ=255)                                                                                    tCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATtga                                              <  1:582988/141‑1 (MQ=255)                                                                                     cGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATtgat                                             <  2:592512/141‑1 (MQ=255)                                                                                     cGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATtgat                                             <  2:592510/141‑1 (MQ=255)                                                                                      gACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATtgatg                                            >  1:284636/1‑141 (MQ=255)                                                                                       aCAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATtgatga                                           >  2:217001/1‑141 (MQ=255)                                                                                          aaGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGaaaa                                        >  1:57275/1‑141 (MQ=255)                                                                                              atatGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCAt                                    <  1:272763/141‑1 (MQ=255)                                                                                                    tGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGCAAATCATTTAATg                              >  2:502515/1‑141 (MQ=255)                                                                                                    tGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATg                              >  1:588065/1‑141 (MQ=255)                                                                                                    tGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTAATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGACAATCATTTAATg                              >  2:326820/1‑141 (MQ=255)                                                                                                         gaaagaaaTCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAATTTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAgg                          >  2:562083/1‑141 (MQ=255)                                                                                                         gaaagaaaTCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAggg                         <  1:168732/141‑1 (MQ=255)                                                                                                         gaaagaaaTCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAggg                         <  1:372464/141‑1 (MQ=255)                                                                                                          aaagaaaTCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAGGGc                        <  1:264372/141‑1 (MQ=255)                                                                                                           aagaaaTCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAGGGCg                       <  2:425547/141‑1 (MQ=255)                                                                                                                       gTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAGGGCGAGTATGGGTaaa           <  2:453940/141‑1 (MQ=255)                                                                                                                                gtACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTAc                                                                                       <  1:210577/55‑1 (MQ=255)                                                                                                                                gtACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTAc                                                                                       >  2:210577/2‑56 (MQ=255)                                                                                                                                aTACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAGGGCGAGTATGGGTAAAGAATATGTa  >  2:353546/1‑141 (MQ=255)                                                                                                                                aTACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAGGGCGAGTATGGGTAAAGAATATGTa  >  1:344357/1‑141 (MQ=255)                                                                                                                                 |                                                                                                                                             GGGCTGGACATTAGTGATTGTCTTTATTTTAGGTTTACTTTTATTACTTCCATCGTTAATATTATTATTAAGATTATTTGTTTTCGACAAAGAATATGTTGAAGGAAAGAAATCATAAGTTGAGACGATACCCCAACTTTCATTTACTTGCATTACTGCATTTAGATAA‑TTTAGTTGGGGTACTCATTTATAATAATTTTAAATTTATATTTTCAATGAATTGATGAAAATCATTTAATGGAGGGCGAGTATGGGTAAAGAATATGTA  >  CP000730/1097109‑1097376

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.