New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1205323	45 (0.960)	29 (0.870) +AGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAG	8/190	3.4	47.4%	intergenic (+459/‑365)	yfiE/lspA	possible lactoylglutathione lyase/A8 family signal peptidase II
	?	CP000730	2478252 =	45 (0.960)					intergenic (+139/+932)	USA300HOU_2340/htrB	hypothetical membrane protein/hemin ABC superfamily ATP binding cassette transporter, ABC protein
Rejected: Coverage evenness skew score above cutoff.

CCACAAACAAACTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCTAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGG  >  CP000730/2478115‑2478389                                                                                                                                          |                                                                                                                                           ccACAAACAAACTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCTAAAAAAAAca                                                                                                                                         >  1:17690/1‑141 (MQ=255)    caaacaaaCTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCTAAAAGAAAcagca                                                                                                                                      >  2:482310/1‑141 (MQ=255)           acTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCTAAAAAAAACAGCAGTAAGAt                                                                                                                               <  1:591760/141‑1 (MQ=255)              tattttatAGGTGGTTTCTATTATCCCCACAAACTATCTGGAAATATGCATTAATCCTTGATTAGACAAGTGGTATATTGAAAATAAATAAACCAAAAATAATGAAACATTAACCACCAAAAAAAACAGCAGCAAGATAAt                                                                                                                            >  2:79847/5‑141 (MQ=255)                      aGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCTAAAAAAAACAGCAGTAAGATAATTTTC‑AAtt                                                                                                                   >  1:503999/1‑141 (MQ=255)                           gttTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCTAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGaaa                                                                                                              >  1:146688/1‑141 (MQ=255)                            tttCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCTAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGaaaa                                                                                                             <  1:256466/141‑1 (MQ=255)                              tCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCTAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAata                                                                                                           >  2:584461/1‑141 (MQ=255)                               cTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCTAAAAAAAACAGCAGTAAGAT‑ATTTTCTAATT‑GAAAattat                                                                                                         <  1:446065/141‑4 (MQ=39)                                 aaTATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCTAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCt                                                                                                        >  1:105881/1‑141 (MQ=255)                                     ttGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCTAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTAct                                                                                                    <  1:133917/141‑1 (MQ=255)                                       gCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCTAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTActgc                                                                                                  >  2:556307/1‑141 (MQ=255)                                         gTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCTAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTActgctg                                                                                                >  1:24364/1‑141 (MQ=255)                                          tCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCTAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGt                                                                                               >  2:470596/1‑141 (MQ=255)                                                  tCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCTAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTAtt                                                                                       <  1:243192/141‑1 (MQ=255)                                                     ttAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCTAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTtat                                                                                    >  2:237845/1‑141 (MQ=255)                                                             tCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCTAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTAtatcatttctgtc                                                                            >  2:584526/1‑129 (MQ=255)                                                              cGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCATAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACtt                                                                           <  2:184257/141‑1 (MQ=255)                                                                ttAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCTAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCg                                                                         <  2:105881/141‑1 (MQ=255)                                                                 tAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCTAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGt                                                                        >  1:128484/1‑141 (MQ=255)                                                                  aaTCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCTAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTa                                                                       >  1:429271/1‑141 (MQ=255)                                                                  aaTCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCTAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTa                                                                       <  1:564408/141‑1 (MQ=255)                                                                       ttGATTAGATATTTGTTATAATGAAAATAAATAAATTAAAGAGTCTGGGACATTAATCCCTAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATAAAATACTTCGTATTGaa                                                                  >  2:295526/1‑141 (MQ=18)                                                                        tGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCTAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAAt                                                                 >  2:41192/1‑141 (MQ=255)                                                                        tGATTAGACAATTAATATATTGAAAATTAATAAAGTAAAGAGTCTGGGACATAAATTCATAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAAt                                                                 >  2:144523/1‑141 (MQ=18)                                                                           ttAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCTAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGc                                                              <  1:282480/141‑1 (MQ=255)                                                                           ttAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCTAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGc                                                              <  2:225739/141‑1 (MQ=255)                                                                             aGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCTAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCtt                                                            >  2:221516/1‑141 (MQ=255)                                                                                       tataTTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCTAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGccc                                                  >  1:163828/1‑141 (MQ=255)                                                                                          atTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCTAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATc                                               >  1:187159/1‑141 (MQ=255)                                                                                                   aaataaaCTAAAGAGTCTGGGACATTAATCCCTAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACAtt                                      >  1:243636/1‑141 (MQ=255)                                                                                                   aaataaaCTAAAGAGTCTGGGACATTAATCCCTAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACAtt                                      >  1:479596/1‑141 (MQ=255)                                                                                                     ataaaCTAAAGAGTCTGGGACATTAATCCCTAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTc                                                                          >  2:483444/1‑103 (MQ=255)                                                                                                     ataaaCTAAAGAGTCTGGGACATTAATCCCTAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTc                                                                          <  1:483444/103‑1 (MQ=255)                                                                                                       aaaCTAAAGAGTCTGGGACATTAATCCCTAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTg                                  >  1:291360/1‑141 (MQ=255)                                                                                                            aaaGAGTCTGGGACATTAATCCCTAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTaaaa                             <  1:351257/141‑1 (MQ=255)                                                                                                                    tGGGACATTAATCCCTAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATaa                     >  2:168999/1‑141 (MQ=255)                                                                                                                    tGGGACATTAATCCCTAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATaa                     >  2:470081/1‑141 (MQ=255)                                                                                                                      ggACATTAATCCCTAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCtatttat                   <  2:187159/141‑5 (MQ=255)                                                                                                                      ggACATTAATCCCTAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAAt                   >  2:319069/1‑141 (MQ=255)                                                                                                                       gACATTAATCCCTAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATa                  <  2:9109/141‑1 (MQ=255)                                                                                                                        aCATTAATCCCTAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCtatttatag                 <  1:45731/141‑7 (MQ=255)                                                                                                                              aTCCCTAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAAtttt           >  1:85294/1‑141 (MQ=255)                                                                                                                              aTCCCTAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAAtgtt           >  2:516414/1‑141 (MQ=255)                                                                                                                                       aaaaaCAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACgg  <  1:470596/141‑1 (MQ=39)                                                                                                                                          |                                                                                                                                           CCACAAACAAACTATTATTATAGGTTGTTTCTAATATTGCGTCAAACTATCTTTAAATATTCGTTAATCCTTGATTAGACAATTGTTATATTGAAAATAAATAAACTAAAGAGTCTGGGACATTAATCCCTAAAAAAAACAGCAGTAAGATAATTTTC‑AATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGG  >  CP000730/2478115‑2478389

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.