New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1456948 =	80 (1.000)	17 (0.220) +GTTTT	6/258	10.6	19.2%	intergenic (‑62/‑182)	USA300HOU_1352/arlR	hypothetical protein/IS200 transposase
	?	CP000730	= 1918540	69 (0.860)					intergenic (‑219/+240)	pckA/USA300HOU_1780	transposase/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AATAGTAGTTGAAAATGATTATCAATACCATATAGAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAATAAATATTG  >  CP000730/1456810‑1457088                                                                                                                                           |                                                                                                                                              aataGTAGTTGAAAATGATTATCAATACCATATAGAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATaaa                                                                                                                                             <  2:276365/141‑1 (MQ=255)  ataGTAGTTGAAAATGATTATCAATACCATATAGAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATaaaa                                                                                                                                            >  2:475523/1‑141 (MQ=255)    agtagtTGAAAATGATTATCAATACCATATAGAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGGCAATATACGTTATAACAACGTTTTATAAAAGc                                                                                                                                          >  2:327386/1‑141 (MQ=255)    agtagtTGAAAATGATTATCAATACCATATAGAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATaaaatc                                                                                                                                          <  2:231720/141‑3 (MQ=255)      tagtTGAAAATGATTATCAATACCATATAGAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAg                                                                                                                                        <  2:627819/141‑1 (MQ=255)       agtTGAAAATGATTATCAATACCATATAGAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGt                                                                                                                                       <  1:277355/141‑1 (MQ=255)        gtTGAAAATGATTATCAATACCATATAGAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTa                                                                                                                                      >  1:245991/1‑141 (MQ=255)          tGAAAATGATTATCAATACCATATAGAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTaaa                                                                                                                                    <  1:325151/141‑1 (MQ=255)            aaaaTGATTATCAATACCATATAGAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAAcc                                                                                                                                  >  1:311205/1‑141 (MQ=255)                taatcgtCAATACCATATAGAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTa                                                                                                                              <  2:983848/135‑1 (MQ=255)                 gATTATCAATACCATATAGAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAAACCTTAc                                                                                                                             >  1:955309/1‑141 (MQ=255)                  aTTATCAATACCATATAGAACATCCCCCCCACAACGGAACGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATAAGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAACAGTAAACCCTTACg                                                                                                                            >  1:186950/1‑141 (MQ=255)                    tATCAATACCATATAGAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGac                                                                                                                          <  2:99681/141‑1 (MQ=255)                     aTCAATACCATATAGAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGaca                                                                                                                         >  2:292713/1‑141 (MQ=255)                     aTCAATACCATATAGAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGaca                                                                                                                         <  2:267746/141‑1 (MQ=255)                         aTACCATATAGAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTACAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑Cttt                                                                                                                    <  2:874303/141‑1 (MQ=255)                             cATATAGAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGt                                                                                                                <  2:151947/141‑1 (MQ=255)                             cATATAGAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGt                                                                                                                >  1:671240/1‑141 (MQ=255)                                 taGAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTAc                                                                                                            >  1:542234/1‑141 (MQ=255)                                  aGAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACt                                                                                                           >  1:563359/1‑141 (MQ=255)                                     aCATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTGATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCt                                                                                                        <  1:531405/141‑1 (MQ=255)                                      cATCCCCCCCACAACGTTTCTTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCtt                                                                                                       <  2:53269/141‑1 (MQ=255)                                      cATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCtt                                                                                                       <  1:520675/141‑1 (MQ=255)                                       aTCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCttt                                                                                                      >  2:432590/1‑141 (MQ=255)                                          ccccccACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGt                                                                                                   >  2:166122/1‑141 (MQ=255)                                           cccccACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGtt                                                                                                  >  1:535620/1‑141 (MQ=255)                                           atatctttctgTTTCGTTCTTGTTGGATTGGTCATTTTCAGATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTATACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGtt                                                                                                  <  2:406437/131‑1 (MQ=255)                                            ccccACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGttt                                                                                                 <  2:5134/141‑1 (MQ=255)                                                 caACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGt                                                                                            >  1:507706/1‑141 (MQ=255)                                                  aaCGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTa                                                                                           <  2:557858/141‑1 (MQ=255)                                                    cGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTaaa                                                                                         >  1:973716/1‑141 (MQ=255)                                                    cGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTaaa                                                                                         >  2:243639/1‑141 (MQ=255)                                                    cGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTaaa                                                                                         >  1:839914/1‑141 (MQ=255)                                                     gTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTaaaa                                                                                        >  1:443771/1‑141 (MQ=255)                                                     gTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTaaaa                                                                                        >  2:539371/1‑141 (MQ=255)                                                         cGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGaa                                                                                    >  1:670856/1‑141 (MQ=255)                                                               tgttgGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCAt                                                                              >  1:281775/1‑141 (MQ=255)                                                                   ggATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGc                                                                          <  2:297387/141‑1 (MQ=255)                                                                     aTTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTa                                                                        <  1:415479/141‑1 (MQ=255)                                                                     aTTGGTCATTCTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGcat                                                                        <  2:51969/141‑3 (MQ=255)                                                                       tGGTCATTTTCAAATATTCCCCTTTTATATTCCCGTAAAAGACAATATACGTTATAATAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATg                                                                      <  2:396732/141‑1 (MQ=255)                                                                         gTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTACAAAGAAAACCATACGCTATGCg                                                                    >  1:902590/1‑141 (MQ=255)                                                                          tCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGt                                                                   >  2:806024/1‑141 (MQ=255)                                                                          tCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTGACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGt                                                                   <  2:466713/141‑1 (MQ=255)                                                                             ttttCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATg                                                                >  1:768366/1‑141 (MQ=255)                                                                                   aaTATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAg                                                          <  1:279122/141‑1 (MQ=255)                                                                                     tatTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGaa                                                        >  2:373009/1‑141 (MQ=255)                                                                                        tCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAg                                                     <  1:475523/141‑1 (MQ=255)                                                                                           ccTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAAACCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAAACATACGATATGCGTATGGTTCAGAAAAGGtt                                                  >  2:346178/1‑141 (MQ=255)                                                                                              tttATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGCTTACTGCTTTTGTATTTTGTAAAACGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTa                                               <  1:658543/141‑1 (MQ=255)                                                                                                 atatGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCg                                                                    <  1:9596/117‑1 (MQ=255)                                                                                                 atatGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCg                                                                    >  2:9596/1‑117 (MQ=255)                                                                                                   atGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCAtt                                          >  2:463008/1‑141 (MQ=255)                                                                                                    tGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCGTACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTg                                         >  2:116900/1‑141 (MQ=255)                                                                                                        cGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTcac                                     <  1:619474/141‑1 (MQ=255)                                                                                                        cGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTcac                                     <  1:874551/141‑1 (MQ=255)                                                                                                        cGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTcac                                     <  1:542331/141‑1 (MQ=255)                                                                                                          tAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACaa                                   <  1:373009/141‑1 (MQ=255)                                                                                                          tAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACaa                                   >  1:296109/1‑141 (MQ=255)                                                                                                              aGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACaaaaaa                               >  1:595518/1‑141 (MQ=255)                                                                                                               gACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAAt                              >  2:360094/1‑141 (MQ=255)                                                                                                                aCAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTTTTTATATTTAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAAtc                             >  2:1011454/1‑140 (MQ=37)                                                                                                                 cAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACt                                                                                                           <  2:326098/62‑1 (MQ=255)                                                                                                                 cAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACt                                                                                                           >  1:326098/1‑62 (MQ=255)                                                                                                                 cAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGc                            >  1:364767/1‑141 (MQ=255)                                                                                                                      taCGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCAtctc                       <  1:292713/141‑1 (MQ=255)                                                                                                                           tataACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGt                  <  2:245991/141‑1 (MQ=255)                                                                                                                           tataACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGt                  >  2:445269/1‑141 (MQ=255)                                                                                                                            ataACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTg                 <  1:907982/141‑1 (MQ=255)                                                                                                                            agaacaccGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGACAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTg                 <  1:907978/139‑1 (MQ=255)                                                                                                                             taACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGc                <  1:392258/141‑1 (MQ=255)                                                                                                                             taACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGc                >  1:734142/1‑141 (MQ=255)                                                                                                                              aacaacGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCt               <  1:539371/141‑1 (MQ=255)                                                                                                                                 aacGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGa            <  1:413745/141‑1 (MQ=255)                                                                                                                                  acGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGaa           >  1:82471/1‑141 (MQ=255)                                                                                                                                  acGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGaa           >  1:281434/1‑141 (MQ=255)                                                                                                                                   cGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGaat          >  1:905878/1‑141 (MQ=255)                                                                                                                                    gTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGaata         >  2:331156/1‑141 (MQ=255)                                                                                                                                        tataAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGaataaata     >  2:952746/1‑141 (MQ=255)                                                                                                                                          taAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAATAAATAtt   >  1:933217/1‑141 (MQ=255)                                                                                                                                           aaaaGCAGTAAACCCTT‑CTCCAGCTGAAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAATAAATATTg  <  1:522359/141‑1 (MQ=17)                                                                                                                                           |                                                                                                                                              AATAGTAGTTGAAAATGATTATCAATACCATATAGAACATCCCCCCCACAACGTTTCGTTCTTGTTGGATTGGTCATTTTCAAATATTCCCCTTTTATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACA‑CTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAATAAATATTG  >  CP000730/1456810‑1457088

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.