New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2431654	42 (1.220)	7 (0.230) +CTATGGAGTCGATGGGGT	5/230	3.8	18.4%	intergenic (+1/+646)	USA300HOU_2294/USA300HOU_2296	transcriptional regulator/hypothetical membrane protein
	?	CP000730	2432295 =	30 (0.870)					intergenic (+642/+5)	USA300HOU_2294/USA300HOU_2296	transcriptional regulator/hypothetical membrane protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AACTGCCGAACTCGAAATTGAAAATATTATAGATATTTCGTATTCATTCGGTAAGACGATTCAAACCAGAGACATATCCATTGATAACTATCATCAATTTTTAAACCCCATCGATTCCTAAAAAACAGCAGTAAGATGATTTTCAATTAGAAAAT‑ATCTTGCTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTTGGTCTTCGACTGGCACTGCTC  >  CP000730/2431533‑2431784                                                                                                                          |                                                                                                                                    aaCTGCCGAACTCGAAATTGAAAATATTATAGATATTTCGTATTCATTCGGTAAGACGATTCAAACCAGAGACATATCCATTGATAACTATCATCAATTTTTAAACCCCATCGATTCCTAAAAAACAGCAGTAAGATGAtt                                                                                                                  >  2:83842/1‑141 (MQ=255) aaCTGCCGAACTCGAAATTGAAAATATTATAGATATTTCGTATTCATTCGGTAAGACGATTCAAACCAGAGACATATCCATTGATAACTATCATCAATTTTTAAACCCCATCGATTCCTAAAAAACAGCAGTAAGATGAtt                                                                                                                  >  2:332152/1‑141 (MQ=255) aaCTGCCGAACTCGAAATTGAAAATATTATAGATATTTCGTATTCATTCGGTAAGACGATTCAAACCAGAGACATATCCATTGATAACTATCATCAATTTTTAAACCCCATCGATTCCTAAAAAACAGCAGTAAGATGAtt                                                                                                                  <  1:250528/141‑1 (MQ=255)     gCCGAACTCGAAATTGAAAATATTATAGATATTTCGTATTCATTCGGTAAGACGATTCAAACCAGAGACATATCCATTGATAACTATCATCAATTTTTAAACCCCATCGATTCCTAAAAAACAGCAGTAAGATGATTTTCa                                                                                                              <  1:244774/141‑1 (MQ=255)      ccGAACTCGAAATTGAAAATATTATAGATATTTCGTATTCATTCGGTAAGACGATTCAAACCAGAGACATATCCATTGATAACTATCATCAATTTTTAAACCCCATCGATTCCTAAAAAACAGCAGTAAGATGATTTTCaa                                                                                                             <  1:380774/141‑1 (MQ=255)             cGAAATTGAAAATATTATAGATATTTCGTATTCATTCGGTAAGACGATTCAAACCAGAGACATATCCATTGATAACTATCATCAATTTTTAAACCCCATCGATTCCTAAAAAACAGCAGTAAGATGATTTTCAATTAGaaa                                                                                                      <  2:387232/141‑1 (MQ=255)                aaTTGAAAATATTATAGATATTTCGTATTCATTCGGTAAGACGATTTAAACCAGAGACATATCCATTGATAACTATCATCAATTTTTAAACCCCATCGATTCCTAAAAAACAGCAGTAAGATGATTTTCAATTAGAAAat‑a                                                                                                  >  1:364113/1‑141 (MQ=255)                     aaaaTATTATAGATATTTCGTATTCATTCGGTAAGACGATTCAAACCAGAGACATATCCATTGATAACTATCATCAATTTTTAAACCCCATCGATTCCTAAAAAACAGCAGTAAGATGATTTTCAATTAGAAAAT‑ATCTtg                                                                                             <  1:263475/141‑1 (MQ=255)                     aaaaTATTATAGATATTTCGTATTCATTCGGTAAGACGATTCAAACCAGAGACATATCCATTGATAACTATCATCAATTTTTAAACCCCATCGATTCCTAAAAAACAGCAGTAAGATGATTTTCAATTAGAAAAT‑ATCTtg                                                                                             >  2:407852/1‑141 (MQ=255)                      aaaTATTATAGATATTTCGTATTCATTCGGTAAGACGATTCAAACCAGAGACATATCCATTGATAACTATCATCAATTTTTAAACCCCATCGATTCCTAAAAAACAGCAGTAAGATGATTTTCAATTAGAAAAT‑ATCTtgc                                                                                            <  2:253309/141‑1 (MQ=255)                       aaTATTATAGATATTTCGTATTCATTCGGTAAGACGATTCAAACCAGAGACATATCCATTGATAACTATCATCAATTTTTAAACCCCATCGATTCCTAAAAAACAGCAGTAAGATGATTTTCAATTAGAAAAT‑ATCTtgct                                                                                           >  1:297080/1‑141 (MQ=255)                       aaTATTATAGATATTTCGTATTCATTCGGTAAGACGATTCAAACCAGAGACATATCCATTGATAACTATCATCAATTTTTAAACCCCATCGATTCCTAAAAAACAGCAGCAAGGT‑ATTTTCTAATTGAAAATCATCTtact                                                                                           <  2:136957/141‑1 (MQ=38)                           ttatAGATATTTCGTATTCATTCGGTAAGACGATTCAAACCAGAGACATATCCATTGATAACTATCATCAATTTTTAAACCCCATCGATTCCTAAAAAACAGCAGTAAGATGATTTTCAATTAGAAAAT‑ATCTTGctgctg                                                                                       >  2:131338/1‑141 (MQ=255)                                  tatTTCGTATTCATTCGGTAAGACGATTCAAACCAGAGACATATCCATTGATAACTATCATCAATTTTTAAACCCCATCGATTCCTAAAAAACAGCAGTAAGATGATTTTCAATTAGAAAAT‑ATCTTGCTGCTGTTCTCTa                                                                                <  2:192623/141‑1 (MQ=255)                                       cGTATTCATTCGGTAAGACGATTCAAACCAGAGACATATCCATTGATAACTATCATCAATTTTTAAACCCCATCGATTCCTAAAAAACAGCAGTAAGATGATTTTCAATTAGAAAAT‑ATCTTGCTGCTGTTCTCTATTtat                                                                           >  2:411867/1‑141 (MQ=255)                                            tcattcGGTAAGACGATTCAAACCAGAGACATATCCATTGATAACTATCATCAATTTTTAAACCCCATCGATTCCTAAAAAACAGCAGTAAGATGATTTTCAATTAGAAAAT‑ATCTTGCTGCTGTTCTCTATTTATACAAt                                                                      >  1:168025/1‑141 (MQ=255)                                                    tAAGACGATTCAAACCAGAGACATATCCATTGATAACTATCATCAATTTTTAAACCCCATCGATTCCTAAAAAACAGCAGTAAGATGATTTTCAATTAGAAAAT‑ATCTTGCTGCTGTTCTCTATTTATACAATACTTCGTa                                                              >  1:176593/1‑141 (MQ=255)                                                      aGACGATTCAAACCAGAGACATATCCATTGATAACTATCATCAATTTTTAAACCCCATCGATTCCTAAAAAACAGCAGTAAGATGATTTTCAATTAGAAAAT‑ATCTTGCTGCTGTTCTCTATTTATACCATACTTCGTAtt                                                            >  2:260304/1‑141 (MQ=255)                                                       gACGATTCAAACCAGAGACATATCCATTGATAACTATCATCAATTTTTAAACCCCATCGATTCCTAAAAAACAGCAGTAAGATGATTTTCAATTAGAAAAT‑ATCTTGCTGCTGTTCTCTATTTATACAATACTTCGTATTg                                                           >  1:132112/1‑141 (MQ=255)                                                        aCGATTCAAACCAGAGACATATCCATTGATAACTATCATCAATTTTTAAACCCCATCGATTCCTAAAAAACAGCAGTAAGATGATTTTCAATTAGAAAAT‑ATCTTGCTGCTGTTCTCTATTTATACAATAcgaagtattgt                                                          <  1:374856/141‑11 (MQ=255)                                                           ttgcAAGCCAGAGACATATCCATTGATAACTATCATCAATTTTTAAACCCCAGGGATTCCTAAAAAACAGCAGTAAGATGATTTTCAATTAAAAAAT‑ATCTTGCTGCTGTTCTCTATTTATACAAGACTTCGTATTGTATg                                                       <  2:45318/138‑1 (MQ=21)                                                             tCAAACCAAATACATATCCATTGATAACTATCATCAATTTTTAAACCCCATAGATAACTAAAAAACAGCAGTAAGATGATTTTCAATTAGAAAAT‑ATCTTGCTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGc                                                     <  2:420792/141‑1 (MQ=21)                                                                   cAGAGACATATCCATTGATAACTATCATCAATTTTTAAACCCCATCGATTCCTAAAAAACAGCAGTAAgatg                                                                                                                     >  1:142100/1‑72 (MQ=255)                                                                   cAGAGACATATCCATTGATAACTATCATCAATTTTTAAACCCCATCGATTCCTAAAAAACAGCAGTAAgatg                                                                                                                     <  2:142100/72‑1 (MQ=255)                                                                       gaCATATCCATTGATAACTATCATCAATTTTTAAACCCCATCGATTCCTAAAAAACAGCAGTAAGATGATTTTCAATTAGAAAAT‑ATCTTGCTGTTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTcc                                           <  1:357544/141‑1 (MQ=255)                                                                       gaCATATCCATTGATAACTATCATCAATTTTTAAACCCCATCGATTCCTAAAAAACAGCAGTAAGATGATTTTCAATTAGAAAAT‑ATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTcc                                           >  2:63336/1‑141 (MQ=255)                                                                        aCATATCCATTGATAACTATCATCAATTTTTAAACCCCATCGATTCCTAAAAAACAGCAGTAAGATGATTTTCAATTAGAAAAT‑ATCTTGCTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCt                                          >  1:129254/1‑141 (MQ=255)                                                                        aCATATCCATTGATAACTATCATCAATTTTTAAACCCCATCGATTCCTAAAAAACAGCAGTAAGATGATTTTCAATTAGAAAAT‑ATCTTGCTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCt                                          >  1:66070/1‑141 (MQ=255)                                                                          atatCCATTGATAACTATCATCAATTTTTAAACCCCATCGATTCCTAAAAAACAGCAGTAAGATGATTTTCAATTAGAAAAT‑ATCTTGCTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAg                                        >  2:25667/1‑141 (MQ=255)                                                                           tatCCATTGATAACTATCATCAATTTTTAAACCCCATCGATTCCTAAAAAACAGCAGTAAGATGATTTTCAATTAGAAAAT‑ATCTTGCTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAgg                                       >  1:73617/1‑141 (MQ=255)                                                                                   gATAACTATCATCAATTTTTAAACCCCATCGATTCCTAAAAACCAGCAGTAAGATGATTTTCAATTACAAAAT‑AGCTTACGACGTTTCTCTTCTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGtc                               >  1:194659/1‑141 (MQ=18)                                                                                   gATAACTATCATCAATTTTTAAACCCCATCGATTCCTAAAAAACAGCAGTAAGATGATTTTCAATTAGAAAAT‑ATCTTGCTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGtc                               <  1:170572/141‑1 (MQ=255)                                                                                   gATAACTATCATCAATTTTTAAACCCCATCGATTCCTAAAAAACAGCAGTAAGATGATTTTCAATTAGAAAAT‑ATCCTGCTGCCGGTCTTTATGGATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGtc                               >  1:194656/1‑141 (MQ=18)                                                                                     tAACTATCATCAATTTTTAAACCCCATCGATTCCTAAAAAACAGCAGTAAGATGATTTTCAATTAGAAAAT‑ATCTTGCTACTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGtctc                             <  1:407852/141‑1 (MQ=255)                                                                                             atcaATTTTTAAACCCCATCGATTCCTAAAAAACAGCAGTAAGATGATTTTCAATTAGAAAAT‑ATCTTGCTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTTgg                     >  1:21830/1‑141 (MQ=255)                                                                                               caATTTTTAAACCCCATCGATTCCTAAAAAACAGCAGTAAGATGATTTTCAATTAGAAAAT‑ATCTTGCTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTTGGTc                   <  1:225246/141‑1 (MQ=255)                                                                                               caATTTTTAAACCCCATCGATTCCTAAAAAACAGCAGTAAGATGATTTTCAATTAGAAAAT‑ATCTTGCTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTTGGTc                   <  1:225452/141‑1 (MQ=255)                                                                                                  tttttAAACCCCATCGATTCCTAAAAAACAGCAGTAAGATGATATTCAATTAGAAAAT‑ATCTTGCTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTTGGTCTTc                <  2:409015/141‑1 (MQ=255)                                                                                                         aCCCCATCGATTCCTAAAAAACAGCAGTAAGATGATTTTCAATTAGAAAAT‑ATCTTGCTGCTGTTATCTATGTATACGACACGTCGTAGTGAATGGCTTTGCTTTCCTAGGGTGCCGTCTCAGCCTTGGTCTTCGACTGGc         >  1:372414/1‑141 (MQ=14)                                                                                                                cGATTCCTAAAAAACAGCAGTAAGATGATTTTCAATTAGAAAAT‑ATCTTGCTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTTGGTCTTCGACTGGCACTGCTc  <  2:304353/141‑1 (MQ=39)                                                                                                                      cTAAAAAACAGCAGTAAGATGATTTTCAATTAGAAAAT‑ATCTTGCTGCTGTTCTCTATTtat                                                                           <  2:428960/62‑1 (MQ=255)                                                                                                                      cTAAAAAACAGCAGTAAGATGATTTTCAATTAGAAAAT‑ATCTTGCTGCTGTTCTCTATTtat                                                                           >  1:428960/1‑62 (MQ=255)                                                                                                                          |                                                                                                                                    AACTGCCGAACTCGAAATTGAAAATATTATAGATATTTCGTATTCATTCGGTAAGACGATTCAAACCAGAGACATATCCATTGATAACTATCATCAATTTTTAAACCCCATCGATTCCTAAAAAACAGCAGTAAGATGATTTTCAATTAGAAAAT‑ATCTTGCTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTTGGTCTTCGACTGGCACTGCTC  >  CP000730/2431533‑2431784

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.