| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP000730 | 879,923 | A→G | 5.3% | intergenic (+101/‑240) | USA300HOU_0822 → / → nuc | hypothetical protein/micrococcal nuclease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 879,923 | 0 | A | G | 5.3% | 218.7 / 2.8 | 75 | intergenic (+101/‑240) | USA300HOU_0822/nuc | hypothetical protein/micrococcal nuclease |
| Reads supporting (aligned to +/- strand): ref base A (34/37); new base G (2/2); total (36/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.83e-01 | |||||||||||
TAAACAAATTGATAAGGTTTATAATGGATTACAACGCTAATCCAAAGTAAATTATAAGTTATACATCTCGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTACAAATAAGGCTAAATATATAAGTTCTGGCACCTAAAATATAGAAAATACATAAAAGTAAGTATAGTTATTTTAT > CP000730/879783‑880063 | tAAACAAATTGATAAGGTTTATAATGGATTACAACGCTAATCCAAAGTAAATTATAAGTTATACATCTCGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGaca < 2:960391/141‑1 (MQ=255)tAAACAAATTGATAAGGTTTATAATGGATTACAACGCTAATCCAAAGTAAATTATAAGTTATACATCTCGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGaca < 2:419504/141‑1 (MQ=255) aaTTGATAAGGTTTATAATGGATTACAACGCTAATCCAAAGTAAATTATAAGTTATACATCTCGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACtaat‑a < 1:1061875/141‑1 (MQ=255) aaTTGATAAGGTTTATAATGGATTACAACGCTAATCCAAAGTAAATTATAAGTTATACATCTCGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACtaat‑a < 2:592401/141‑1 (MQ=255) aTTGATAAGGTTTATAATGGATTACAACGCTAATCCAAAGTAAATTATAAGTTATACATCTCGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACNCtaat‑aa > 2:815726/1‑141 (MQ=255) tGATAAGGTTTATAATGGATTACAACGCTAATCCAAAGTAAATTATAAGTTATACATCTCGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAAc < 2:851153/141‑1 (MQ=255) aaGGTTTATAATGGATTACAACGCTAATCCAAAGTAAATTATAAGTTATACATCTCGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACctct < 2:359617/141‑1 (MQ=255) aGGTTTATAATGGATTACAACGCTAATCCAAAGTAAATTATAAGTTATACATCTCGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCtt > 1:788763/1‑141 (MQ=255) ttATAATGGATTACAACGCTAATCCAAAGTAAATTATAAGTTATACATCTCGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGtc < 2:1067439/141‑1 (MQ=255) tataATGGATTACAACGCTAATCCAAAGTAAATTATAAGTTATACATCTCGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGtct > 2:68698/1‑141 (MQ=255) ataATGGATTACAACGCTAATCCAAAGTAAATTATAAGTTATACATCTCGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGtctc > 2:771504/1‑141 (MQ=255) ataATGGATTACAACGCTAATCCAAAGTAAATTATAAGTTATACATCTCGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGtctc > 2:523602/1‑141 (MQ=255) aTGGATTACAACGCTAATCCAAAGTAAATTATAAGTTATACATCTCGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGat < 1:203306/141‑1 (MQ=255) ttACAACGCTAATCCAAAGTAAATTATAAGTTATACATCTCGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGAt < 1:379134/141‑1 (MQ=255) agcgttgtAATCCAAAGTAAATTATAAGTTATACATCTCGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAg > 1:1078800/8‑141 (MQ=255) aCAACGCTAATCCAAAGTAAATTATAAGTTATACATCTCGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAg > 2:571174/1‑141 (MQ=255) aCAACGCTAATCCAAAGTAAATCATAAGTTATACATCTCGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAg > 1:764523/1‑141 (MQ=255) cAACGCTAATCCAAAGTAAATTATAAGTTATACATCTCGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGt > 2:795141/1‑141 (MQ=255) cAACGCTAATCCAAAGTAAATTATAAGTTATACATCTCGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGt > 2:757751/1‑141 (MQ=255) aCGCTAATCCAAAGTAAATTATAAGTTATACATCTCGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATATAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCt > 2:1030935/1‑141 (MQ=255) aCGCTAATCCAAAGTAAATTATAAGTTATACATCTCGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCt > 1:72356/1‑141 (MQ=255) gtAATCCAAAGTAAATTATAAGTTATACATCTCGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCa < 2:708751/140‑1 (MQ=255) tAATCCAAAGTAAATTATAAGTTATACATCTCGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCaa < 1:790307/141‑1 (MQ=255) aTCCAAAGTAAATTATAAGTTATACATCTCGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACg < 2:1049642/141‑1 (MQ=255) tCCAAAGTAAATTATAAGTTATACATCTCGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGa > 2:187167/1‑141 (MQ=255) ccAAAGTAAATTATAAGTTATACATCTCGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGAt > 2:107931/1‑141 (MQ=255) aaaTTATAAGTTATACATCTCGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCAtgtt < 2:215934/141‑1 (MQ=255) aTTATAAGTTATACATCTCGTTTTTAAATGACAATTTATCCCCGTAAATATAATAAATAATCTTTTCAAATTCCGCATAGATATAGAGACGCTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCAtgttgt > 1:63047/1‑141 (MQ=255) aGTTATACATCTCGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCtt < 2:568208/141‑1 (MQ=255) gTTATACATCTCGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCttt < 1:5235/141‑1 (MQ=255) gTTATACATCTCGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCttt < 1:216574/141‑1 (MQ=255) ataCATCTCGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTa < 1:659620/141‑1 (MQ=255) ataCATCTCGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTa > 2:531725/1‑141 (MQ=255) ataCATCTCGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTa > 2:339466/1‑141 (MQ=255) ataCATCTCGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTa > 2:115721/1‑141 (MQ=255) cATCTCGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAAtt > 2:458411/1‑141 (MQ=255) aTCTCGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAAttt < 1:21032/141‑1 (MQ=255) ctcGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTa < 1:147264/141‑1 (MQ=255) ctcGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTa > 1:449458/1‑141 (MQ=255) tcGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTAc > 1:302434/1‑141 (MQ=255) cGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTACa < 2:689229/141‑1 (MQ=255) tttttAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCGCATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTACaaa > 2:139525/1‑141 (MQ=255) tttttAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTGTAATTTTACaaa < 2:933229/141‑1 (MQ=255) ttttAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTACAAAt < 1:159758/141‑1 (MQ=255) ttttAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTACAAAt < 1:535881/141‑1 (MQ=255) ttAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTACAAATaa > 2:929520/1‑141 (MQ=255) tAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAATAAAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTACAAATaa > 1:251408/1‑141 (MQ=255) aaTGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACGCTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTACAAATAAGGc > 1:664605/1‑141 (MQ=255) aaTGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTACAAATAAGGc > 1:968779/1‑141 (MQ=255) tGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTACAAATAAGGCTa < 2:101339/141‑1 (MQ=255) tGACAATTTATCCCCGTAAATATAATAAATAATCTTTTCAAATTCCGCATAGATATAGAGACGCTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTACAAATAAGGCTa < 1:84467/141‑1 (MQ=255) aaTTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTACAAATAAGGCTAAata < 2:893351/141‑1 (MQ=255) aTTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTACAAATAAGGCTAAatat < 2:952732/141‑1 (MQ=255) ttATCCCCGTGAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTACAAATAAGGCTAAatatat < 1:15331/141‑1 (MQ=255) ttATACCCGGAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AACCCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTACAAATAAGGCTAAatatat < 2:303955/141‑1 (MQ=255) aTCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTACAAATAAGGCTAAATATATaa < 1:458447/141‑1 (MQ=255) aTCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTACAAATAAGGCTAAATATATaa < 1:519929/141‑1 (MQ=255) aaaTATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTACAAATAAGGCTAAATATATAAGTACTGGc > 1:427322/1‑141 (MQ=255) atatTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAAACTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTACAAATAAGGCTAAATATATAAGTTCTGGCAc > 2:893452/1‑141 (MQ=255) attatAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTACAAATAAGGCTAAATATATAAGTTCTGGCACCt > 1:558329/1‑141 (MQ=255) attatAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTACAAATAAGGCTAAATATATAAGTTCTGGCACCt > 1:769946/1‑141 (MQ=255) ttatAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTACAAATAAGGCTAAATATATAAGTTCTGGCACCTa > 1:77726/1‑141 (MQ=255) aaataaTCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTACAAATAAGGCTAAATATATAAGTTCTGGCACCTAAAat < 2:777066/141‑1 (MQ=255) cTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTTATTTTACAAATAAGGCTAAATATATAAGTTCTGGCACCTAAAATATAGaaa < 1:77325/141‑1 (MQ=255) cTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAATCTGCAACGCTTCATGCTGAAGGCTTTTTAATTCTACAGCTAAGCCTAGCTATATCAGCTGTGGAACCTAAAATATAGaaa > 1:491225/1‑141 (MQ=255) ttttCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTACAAATAAGGCTAAATATATAAGTTCTGGAACCTAAAATATAGaaaa < 2:767647/141‑1 (MQ=255) cAAATTCCACATAGATATAGAGACGCTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTACAAATAAGGCTAAATATATAAGTTCTGGCACCTAAAATATAGAAAATACa < 2:664605/141‑1 (MQ=255) cAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTACAAATAACGCTAAATATATAAGTTCTGGCACCTAAAATATAGAAAATACa < 1:932098/141‑1 (MQ=255) aaaTTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAAGTTTACAAATAAGGCTAAATATATAAGTTCTGGCACCTAAAATATAGAAAATACAt < 1:646440/141‑1 (MQ=255) aTTCCACATAGATATAGAGACACTAAT‑AGACCTCTTTGTCTTTATAGTATAGGCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTACAAATAAGGCTAAATATATAAGTTCTGGCACCTAAAATATAGAAAATACATaa < 1:218012/141‑1 (MQ=255) ccACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTACAAATAAGGCTAAATATATAAGTTCTGGCACCTAAAATATAGAAAATACATAAaag > 2:531299/1‑141 (MQ=255) aTAGATATAGAGACACTAAT‑AAACCTCTTTGTCACGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTACAAATAAGGCTAAATATATAAGTTCTGGCACCTAAAATATAGAAAATACATAAaagtaag > 1:564439/1‑141 (MQ=255) atatAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTACAAATAAGGCTAAATATATAAGTTCTGGCACCTAAAATATAGAAAATACATAAAAGTAAGtata < 1:942448/141‑1 (MQ=255) atatAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTACAAATAAGGCTAAATATATAAGTTCTGGCACCTAAAATATAGAAAATACATAAAAGTAAGtata > 2:954582/1‑141 (MQ=255) atatAGAGACACTAAT‑AAACCTCGTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTACAAATAAGGCTAAATATATAAGTTCTGGCACCTAAAATATAGAAAATACATAAAAGTAAGtata < 1:215446/141‑1 (MQ=255) ataGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTACAAATAAGGCTAAATATATAAGTTCTGGCACCTAAAATATAGAAAATACATAAAAGTAAGTATAGt < 1:590043/141‑1 (MQ=255) taGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTACAAATAAGGCTAAATATATAAGTTCTGGCACCTAAAATATAGAAAATACATAAAAGTAAGTATAGtt > 1:408519/1‑141 (MQ=255) gttacacTAAT‑AAACCTCTTTGTCTTGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTACAAATAAGGCTAAATATATATGTTCTGGCACCTAAAATATAGAAAATACATAAAAGTAAGTATAGttat < 2:756474/138‑1 (MQ=255) gaCACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTACAAATAAGGCTAAATATATAAGTTCTGGCACCTAAAATATAGAAAATACATAAAAGTAAGTATAGttattt > 1:269133/1‑141 (MQ=255) acTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTACAAATAAGGCTAAATATATAAGTTCTGGCACCTAAAATATAGAAAATACATAAAAGTAAGTATAGttattttat > 2:323490/1‑141 (MQ=255) | TAAACAAATTGATAAGGTTTATAATGGATTACAACGCTAATCCAAAGTAAATTATAAGTTATACATCTCGTTTTTAAATGACAATTTATCCCCGTAAATATTATAAATAATCTTTTCAAATTCCACATAGATATAGAGACACTAAT‑AAACCTCTTTGTCTCGATATGATAGTCTGCAACGATTCATGTTGTAGGCTTTTTAATTTTACAAATAAGGCTAAATATATAAGTTCTGGCACCTAAAATATAGAAAATACATAAAAGTAAGTATAGTTATTTTAT > CP000730/879783‑880063 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |