BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP000730	36,413	C→T	49.4%	V47I (GTC→ATC)	tpn ←	IS431mec transposase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	36,413	0	C	T	49.4%	62.1 / inf	458	V47I (GTC→ATC)	tpn	IS431mec transposase
Reads supporting (aligned to +/- strand): ref base C (98/132); new base T (103/123); total (203/255)
Fisher's exact test for biased strand distribution p-value = 5.72e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 463 total aligned reads displayed.

ATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATAC  >  CP000730/36274‑36553

 tGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCg                                                                                                                                            <  1:871429/141‑1 (MQ=255)

  ggCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGTGGCATATTCTTTAAACCAACGGTAGACCGt                                                                                                                                           >  2:975940/1‑141 (MQ=255)

  ggCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGt                                                                                                                                           <  2:192314/141‑1 (MQ=255)

   gCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGtt                                                                                                                                          >  2:1030431/1‑141 (MQ=255)

    cACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTg                                                                                                                                         >  2:960376/1‑141 (MQ=40)

    cACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTg                                                                                                                                         <  2:286689/141‑1 (MQ=40)

    cACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTg                                                                                                                                         >  1:1000914/1‑141 (MQ=255)

    cACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTg                                                                                                                                         >  1:219365/1‑141 (MQ=255)

    cACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGCAGATCGttt                                                                                                                                         >  2:993678/1‑140 (MQ=11)

     aCGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGa                                                                                                                                        <  2:932465/141‑1 (MQ=19)

     aCGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGa                                                                                                                                        >  2:902169/1‑141 (MQ=25)

     aCGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGa                                                                                                                                        <  2:109232/141‑1 (MQ=21)

      cGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGaa                                                                                                                                       >  2:252071/1‑141 (MQ=255)

        atatAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAatg                                                                                                                                     <  1:460863/141‑1 (MQ=255)

         tataACTAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTTTTCTTTTTCTTTTAAATTTGATATAAAATTTGGGCATTTTTTTTAACCCAAAGGTAGATCGNTTAatga                                                                                                                                    >  2:815042/1‑141 (MQ=11)

         tataAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAatga                                                                                                                                    <  2:272192/141‑1 (MQ=255)

          ataAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAatgat                                                                                                                                   <  2:165109/141‑1 (MQ=21)

          ataAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAatgat                                                                                                                                   >  1:662876/1‑141 (MQ=21)

             aaTATCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGaa                                                                                                                                <  2:144069/141‑1 (MQ=255)

               tAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACg                                                                                                                              <  1:608377/141‑1 (MQ=255)

                 gCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGtt                                                                                                                            >  1:122378/1‑141 (MQ=255)

                   tCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTa                                                                                                                          <  2:1009441/141‑1 (MQ=21)

                   tCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTa                                                                                                                          <  2:551672/141‑1 (MQ=40)

                   tCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTa                                                                                                                          >  1:890149/1‑141 (MQ=255)

                   cacaatttCCATTTATGTTGATGTACGTCTCAGCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTCTCTGCCAAATTTGATATAAAATTGGGGCATATTCTTGACCCCAACGGTAGACCGTTGAATGATGAACATTTa                                                                                                                          <  2:921290/136‑1 (MQ=11)

                    ccATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTac                                                                                                                         <  2:700386/141‑1 (MQ=255)

                     cATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCGTATTCTTGAACCCAACGGTAGACCGTTGACTGATGAACGTTTaca                                                                                                                        >  1:901360/1‑141 (MQ=255)

                      aTTTTCCTTTTTTTTTTTTTTTTTTCTCATCAATACGCCAATTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTATTTTGTTGATTGTTGAACGTTTacac                                                                                                                       >  2:702350/1‑141 (MQ=11)

                      aTTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTacac                                                                                                                       <  2:636976/141‑1 (MQ=21)

                      aTTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTacac                                                                                                                       <  2:850442/141‑1 (MQ=40)

                      aTTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACggggtgta                                                                                                                       <  1:584534/141‑8 (MQ=11)

                      aTTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTacac                                                                                                                       <  1:165302/141‑1 (MQ=255)

                       ttttCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTAcacc                                                                                                                      <  2:426326/141‑1 (MQ=21)

                       ttttCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTAcacc                                                                                                                      <  2:15379/141‑1 (MQ=40)

                         ttCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGATTAcaccac                                                                                                                    <  1:952885/141‑1 (MQ=255)

                          tCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGtggtgtaaacg                                                                                                                   <  1:631865/141‑11 (MQ=255)

                          tCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACg                                                                                                                   >  1:778934/1‑141 (MQ=21)

                           ccTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTACTAAGC‑TTTTTTATGCTTTTTTTTCCAAATGTGGTAATTCATTGGGGACTATTCTTGAACCCAACGGTACACGGTGGAATGGTGAACGTTTACACCACGt                                                                                                                  <  2:372625/141‑1 (MQ=11)

                           ccTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGt                                                                                                                  >  1:300428/1‑141 (MQ=40)

                            cTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGtt                                                                                                                 >  1:800022/1‑141 (MQ=21)

                            cTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGtt                                                                                                                 >  2:228338/1‑141 (MQ=255)

                             ttttATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTc                                                                                                                <  2:721933/141‑1 (MQ=255)

                               ttATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTctc                                                                                                              <  1:572899/141‑3 (MQ=255)

                                 tttttGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCtt                                                                                                            <  2:208823/140‑1 (MQ=11)

                                 aTTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCtt                                                                                                            <  1:141859/141‑1 (MQ=18)

                                 aTTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCtt                                                                                                            <  1:991294/141‑1 (MQ=21)

                                 aTTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCtt                                                                                                            <  2:260890/141‑1 (MQ=21)

                                 aTTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCtt                                                                                                            <  2:1062838/141‑1 (MQ=11)

                                 aTTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCtt                                                                                                            <  1:413552/141‑1 (MQ=11)

                                  ttttGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCtt                                                                                                            <  1:847226/140‑1 (MQ=255)

                                   tttGATGTACGTTTCATAAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTaa                                                                                                          <  2:407835/141‑1 (MQ=255)

                                    ttGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTGTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAat                                                                                                         >  2:935648/1‑141 (MQ=17)

                                      gatatACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTTTTTTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAatat                                                                                                       >  2:32180/5‑141 (MQ=11)

                                      gatatACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAatat                                                                                                       >  1:478573/5‑141 (MQ=11)

                                      gatatACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAAATGGACTATATTGTTGATCCTAACGTTAGTGCGTTGAATGATGAACGTTTACACCACGTTCTCTTAatat                                                                                                       >  1:757458/5‑141 (MQ=11)

                                      gATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAatat                                                                                                       <  1:249267/141‑1 (MQ=39)

                                      gATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAatat                                                                                                       >  2:649999/1‑141 (MQ=40)

                                      gATATACGTCTCATCAATTCGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAatat                                                                                                       <  2:761468/141‑1 (MQ=11)

                                          tACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCa                                                                                                   <  2:1072878/141‑1 (MQ=21)

                                          tACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCa                                                                                                   >  2:389752/1‑141 (MQ=21)

                                          tACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCa                                                                                                   <  1:791841/141‑1 (MQ=40)

                                           aCGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCa                                                                                                   >  2:616913/1‑141 (MQ=12)

                                           aCGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAg                                                                                                  <  1:509980/141‑1 (MQ=255)

                                           aCGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAg                                                                                                  <  2:830027/141‑1 (MQ=21)

                                            cGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGa                                                                                                 >  2:331403/1‑141 (MQ=255)

                                            cGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGa                                                                                                 >  1:197506/1‑141 (MQ=21)

                                               ctcATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCCAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGatat                                                                                              >  1:830352/1‑141 (MQ=255)

                                                 catcaATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGatatat                                                                                            <  2:880823/141‑1 (MQ=255)

                                                  atcaATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATc                                                                                           <  1:447351/141‑1 (MQ=255)

                                                    caATACGCCATTTGTAATAAGC‑TTTTTTATTCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCAc                                                                                         >  2:299882/1‑141 (MQ=21)

                                                    caATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCAc                                                                                         >  2:673728/1‑141 (MQ=255)

                                                    caATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCAc                                                                                         >  2:745966/1‑141 (MQ=255)

                                                      aTACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGa                                                                                       <  1:280229/141‑1 (MQ=255)

                                                      aTACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGa                                                                                       >  1:1015798/1‑141 (MQ=255)

                                                      aTACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGa                                                                                       <  1:379558/141‑1 (MQ=255)

                                                      aTACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGa                                                                                       >  1:648725/1‑141 (MQ=21)

                                                      aTACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGa                                                                                       <  2:529530/141‑1 (MQ=40)

                                                       tACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGAt                                                                                      <  2:450587/141‑1 (MQ=255)

                                                       tACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGAt                                                                                      <  1:228338/141‑1 (MQ=255)

                                                        aCGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATa                                                                                     >  1:1037120/1‑141 (MQ=255)

                                                           ccATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACt                                                                                  >  1:917208/1‑141 (MQ=25)

                                                             aTTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCa                                                                                <  1:692700/141‑1 (MQ=18)

                                                               ttGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAAt                                                                              <  2:475545/141‑1 (MQ=11)

                                                                tGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATg                                                                             <  1:971854/141‑1 (MQ=40)

                                                                 gTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGATATATCACGATAGCTCAATgc                                                                            <  1:182128/141‑2 (MQ=11)

                                                                  taataaGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATgca                                                                           <  1:263443/141‑3 (MQ=17)

                                                                  taataaGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGta                                                                           <  1:522013/141‑1 (MQ=255)

                                                                   aataaGC‑TTTTTTTTGTTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCATATATATCACGATAGCTTAAttcat                                                                          >  2:580311/1‑137 (MQ=11)

                                                                   aataaGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAATATTTCAGCTATCGCACGATAGCTCAATgcat                                                                          >  1:555241/1‑138 (MQ=11)

                                                                   aataaGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGtat                                                                          >  2:59227/1‑141 (MQ=255)

                                                                       aGC‑TTTTTTTTTTTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCt                                                                      >  2:175159/1‑141 (MQ=255)

                                                                                  tGCTTTTTTTTTTAAATTTGATACAAAATTGGGGTATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCATGTTCCTTTATTTTTTTATTTTTATCACGATAACTCAATGTATATCTTAGAtagtat                                                            >  2:1049318/1‑140 (MQ=11)

                                                                                     tttttCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCa                                                         <  2:132856/141‑1 (MQ=35)

                                                                                      ttttCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCaa                                                        <  1:367720/141‑1 (MQ=35)

                                                                                              cAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACa                                                <  2:791070/141‑1 (MQ=35)

                                                                                                  tttGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGa                                            >  2:573434/1‑141 (MQ=35)

                                                                                                    tGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATa                                          >  2:355640/1‑141 (MQ=35)

                                                                                                                   gCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAAt                           <  1:740376/141‑1 (MQ=32)

                                                                                                                              aaCCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCt                >  1:1049718/1‑141 (MQ=32)

                                                                                                                                            ccGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATAc  <  1:1075552/141‑1 (MQ=32)

ATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGC‑TTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTTCAGATATATCACGATAACTCAATGTATATCTTAGATAGTAGCCAACGGCTACAGTGATAACATCCTTGTTAAATTGTTTATATCTGAAATAGTTCATAC  >  CP000730/36274‑36553

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`