New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1637435	31 (0.840)	3 (0.080)	3/250	NT	8.6%	coding (1119/1680 nt)	recN	DNA repair protein RecN
	?	CP000730	= 1637444	34 (0.950)					coding (1110/1680 nt)	recN	DNA repair protein RecN

GGACTGATTAAAAATTCTACAAATTCGATTCCATCAATATTCGGTTCTTCTAATTTTTTAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCGATGTACTTTGTTCATAGTTTTCAATTTTATTGATTTCATTATTAAGCTTTTCTTGA  >  CP000730/1637298‑1637573                                                                                                                                          |                                                                                                                                            ggACTGATTAAAAATTCTACAAATTCGATTCCATCAATATTCGGTTCTTCTAATTTTTTAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑t                                                                                                                                         >  2:57895/1‑141 (MQ=255)     tGATTAAAAATTCTACAAATTCTATTCCATCAATATTCGGTTCTTCTAATTTTTTAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATac                                                                                                                                     <  2:236314/141‑1 (MQ=255)     tGATTAAAAATTCTACAAATTCGATTCCATCAATATTCGGTTCTTCTAATTTTTTAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGtcgtata                                                                                                                                      <  2:237427‑M1/141‑8 (MQ=255)       aTTAAAAATTCTACGAATTCGATTCCATCAATATTCGGTTCTTCTAATTTTTTAAATGAAATCCCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATacga                                                                                                                                   >  1:257887/1‑141 (MQ=255)          aaaaaTTCTACAAATTCGATTCCATCAATATTCGGTTCTTCTAATTTTTTAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGAcgc                                                                                                                                <  1:326187‑M2/141‑4 (MQ=255)          aaaaaTTCTACAAATTCGATTCCATCAATATTCGGTTCTTCTAATTTTTTAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGAcgc                                                                                                                                <  2:7394‑M2/141‑4 (MQ=255)                tCTACAAATTCGATTCCATCAATATTCGGTTCTTCTAATTTTTTAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCttt                                                                                                                          >  1:205340/1‑141 (MQ=255)                   aCAAATTCGATTCCATCAATATTCGGTTCTTCTAATTTTTTAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGAt                                                                                                                       <  2:398414/141‑1 (MQ=255)                   aCAAATTCGATTCCATCAATATTCGGTTCTTCTAATTTTTTAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGAt                                                                                                                       <  2:34919/141‑1 (MQ=255)                       aTTCGATTCCATCAATATTCGGTTCTTCTAATTTTTTAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACg                                                                                                                   >  2:430820/1‑141 (MQ=255)                       aTTCGATTCCATCAATATTCGGTTCTTCTAATTTTTTAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACg                                                                                                                   >  2:142163/1‑141 (MQ=255)                        ttCGATTCCATCAATATTCGGTTCTTCTAATTTTTTAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGc                                                                                                                  <  2:93673/141‑1 (MQ=255)                            aTTCCATCAATATTCGGTTCTTCTAATTTTTTAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGt                                                                                                              >  1:391116/1‑141 (MQ=255)                              tCCATCAATATTCGGTTCTTCTAATTTTTTAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTcc                                                                                                            >  1:240217/1‑141 (MQ=255)                                  tCAATATTCGGTTCTTCTAATTTTTTAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAAcc                                                                                                        <  2:240217/141‑1 (MQ=255)                                         tCGGTTCTTCTAATTTTTTAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TCTACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATaa                                                                                                 >  1:388185/1‑141 (MQ=255)                                          cGGTTCTTCTAATTTTTTAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAAc                                                                                                >  1:7126/1‑141 (MQ=255)                                           ggTTCTTCTAATTTTTTAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGTCGTATA‑GTcgctagggagttaagagaccacat                                                                                                           <  2:375331‑M2/129‑25 (MQ=255)                                           ggTTCTTCTAATTTTTTAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGTCGTATA‑GTcgctagggagttaagagaccacat                                                                                                           >  1:375331‑M2/1‑105 (MQ=255)                                              tcttctAATTTTTTAAATGAAATCTCAAGATTAGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGa                                                                                            >  2:40639/1‑141 (MQ=255)                                                           tAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCat                                                                               >  2:162265/1‑141 (MQ=255)                                                           tAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCat                                                                               <  1:225073/141‑1 (MQ=255)                                                             aaTGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCattt                                                                             >  2:113668/1‑141 (MQ=255)                                                             aaTGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCattt                                                                             >  2:456774/1‑141 (MQ=255)                                                                       tgaGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTtctc                                                                   >  2:8632/3‑141 (MQ=255)                                                                         aGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGACTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCGCGt                                                                 >  1:322728/1‑141 (MQ=255)                                                                             ttGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACt                                                             <  2:203752/141‑1 (MQ=255)                                                                                 gTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCGa                                                         <  1:107317/141‑1 (MQ=255)                                                                                   cTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCGATg                                                       <  2:206639/141‑1 (MQ=255)                                                                                                   ttGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCGATGTACTTTGTTCATAGtt                                       <  2:391116/141‑1 (MQ=255)                                                                                                                  aaTGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCGATGTACTTTGTTCATAGTTTTCAATTTTATTGAt                        >  2:66425/1‑141 (MQ=255)                                                                                                                   aTGTGGTCTCTTAACTCCCTAGCGactatacgacgctagggagttaagagaccacattgtatcggaaattcaaaacttacaaatgaaagacgcaaatcttgagatttcatttaaaaaattagaagaacc                                    >  1:375331‑M1/1‑24 (MQ=255)                                                                                                                   aTGTGGTCTCTTAACTCCCTAGCGactatacgacgctagggagttaagagaccacattgtatcggaaattcaaaacttacaaatgaaagacgcaaatcttgagatttcatttaaaaaattagaagaacc                                    <  2:375331‑M1/129‑106 (MQ=255)                                                                                                                   aTGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCGATGTACTTTGTTCATAGTTTTCAATTTTATTGAtt                       <  1:364753/141‑1 (MQ=255)                                                                                                                            ctTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCGATGTACTTTGTTCATAGTTTTCAATTTTATTGATTTCAttatta              <  2:455787/141‑1 (MQ=255)                                                                                                                               aaCTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCGATTTACTTTGTTCATAGTTTTCAATTTTATTGATTTCATTATTAAGc           >  1:413326/1‑141 (MQ=255)                                                                                                                               aaCTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCGATGTACTTTGTTTATAGTTTTTATTTTTATTGATTTCAttattattt           >  2:415034/1‑138 (MQ=255)                                                                                                                                  tCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCGATGTACTTTGTTCATAGTTTTCAATTTTATTGATTTCATTATTAAGCttt        <  1:114305/141‑1 (MQ=255)                                                                                                                                    ccTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCGATGTACTTTGTTCATAGTTTTCAATTTTATTGATTTCATTATTAAGCTTTTc      >  1:301570/1‑141 (MQ=255)                                                                                                                                      tAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCGATGTACTTTGTTCATAGTTTTCAATTTTATTGATTTCATTATTAAGCTTTTCtt    >  1:348625/1‑141 (MQ=255)                                                                                                                                      tAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCGATGTACTTTGTTCATAGTTTTCAATTTTATTGATTTCATTATTAAGCTTTTCtt    >  1:220282/1‑141 (MQ=255)                                                                                                                                      tAGCGAC‑AATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCGATGTACTTTGTTCATAGTTTTCAATTTTATTGATTTCATTATTAAGCTTTTCtt    <  2:337381/141‑1 (MQ=255)                                                                                                                                       aGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCGATGTACTTTGTTCATAGTTTTCAATTTTATTGATTTCATTATTAAGCTTTTCTTg   >  2:218141/1‑141 (MQ=255)                                                                                                                                        gCGtcgtatagtcgctagggagttaagagaccacattgtatcggaaattcaaaacttacaaatgaaagacgcaaatcttgagatttcatttaaaaaattagaagaaccgaatattgatggaatcgaatttgtagaattttt   <  1:326187‑M1/141‑139 (MQ=255)                                                                                                                                        gCGtcgtatagtcgctagggagttaagagaccacattgtatcggaaattcaaaacttacaaatgaaagacgcaaatcttgagatttcatttaaaaaattagaagaaccgaatattgatggaatcgaatttgtagaattttt   <  2:7394‑M1/141‑139 (MQ=255)                                                                                                                                        gCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCTATGTACTTTGTTCATATTTTTCAATTTTATTTATTTCATGATTAAGCTTTTCTTGa  >  2:102717/1‑141 (MQ=255)                                                                                                                                          |                                                                                                                                            GGACTGATTAAAAATTCTACAAATTCGATTCCATCAATATTCGGTTCTTCTAATTTTTTAAATGAAATCTCAAGATTTGCGTCTTTCATTTGTAAGTTTTGAATTTCCGATACAATGTGGTCTCTTAACTCCCTAGCGAC‑TATACGACGCTGCTTTGATAACGCTTGTCCAACCTCTATAACTTGATTATACAATGCATTTATTTCTTCTCGTAACTGCGATGTACTTTGTTCATAGTTTTCAATTTTATTGATTTCATTATTAAGCTTTTCTTGA  >  CP000730/1637298‑1637573

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.