Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP00073036,3150GA55.9% 77.6 / inf 441Y79Y (TAC→TAT) tpnIS431mec transposase
Reads supporting (aligned to +/- strand):  ref base G (97/97);  new base A (111/135);  total (209/232)
Fisher's exact test for biased strand distribution p-value = 3.37e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.19e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 445 total aligned reads displayed.

TTACCAAATTGTTTAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTT  >  CP000730/36175‑36454
                                                                                                                                             |                                                                                                                                           
 tACCAAATTGTTTAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATGt                                                                                                                                            <  1:230289/141‑1 (MQ=32)
 tACCAAATTGTTTAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATGt                                                                                                                                            <  1:123751/141‑1 (MQ=32)
    cAAATTGTTTAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGATACATTTT‑CCTTTTATTTTGATGTACg                                                                                                                                         >  2:85769/1‑141 (MQ=17)
       aTTGTTTAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGtct                                                                                                                                      <  1:165461/141‑1 (MQ=12)
       aTTGTTTAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGtct                                                                                                                                      >  2:262100/1‑141 (MQ=17)
         tGTTTAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCATCTGCATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATGTACGTCtca                                                                                                                                    >  2:316387/1‑141 (MQ=17)
            ttAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCtcatca                                                                                                                                 >  1:358684/1‑141 (MQ=12)
             tAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATGTACGTCTCATCaa                                                                                                                                <  1:24729/141‑1 (MQ=32)
              aaTGATACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAAt                                                                                                                               <  2:226554/141‑1 (MQ=12)
                     cGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATGTACGTCTCATCAATACGCCAt                                                                                                                        <  1:150940/141‑1 (MQ=32)
                       tttGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCAttt                                                                                                                      >  1:213813/1‑141 (MQ=12)
                        ttGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTg                                                                                                                     >  2:34945/1‑141 (MQ=17)
                         tGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGt                                                                                                                    >  1:158708/1‑141 (MQ=32)
                           aTAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACTATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGtaa                                                                                                                  <  2:390176/141‑1 (MQ=12)
                           aTAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATGTACGTCTCATCACTACGCCATTTGtaa                                                                                                                  >  2:127895/1‑141 (MQ=17)
                           aTAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGtaa                                                                                                                  <  1:17246/141‑1 (MQ=32)
                           aTAAACGCATATGCTGAATGATTATCTCGTTGCTCACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATCCGTCTCATCAATACGCCATTTGtaa                                                                                                                  <  2:344235/141‑1 (MQ=255)
                                cGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGc                                                                                                             <  2:220644/141‑1 (MQ=255)
                                 gCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCt                                                                                                            <  1:69371/141‑1 (MQ=255)
                                 gCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCt                                                                                                            >  1:383752/1‑141 (MQ=255)
                                 gCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCt                                                                                                            >  1:278225/1‑141 (MQ=35)
                                    tatGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCtttt                                                                                                         <  1:227248/141‑1 (MQ=255)
                                       gCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTa                                                                                                      <  1:182045/141‑1 (MQ=255)
                                       gCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTa                                                                                                      <  2:141154/141‑1 (MQ=255)
                                          gAATGATTATCTCGTTGCTTACGCAATCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGc                                                                                                   <  2:328722/141‑1 (MQ=255)
                                           aaTGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCt                                                                                                  <  2:240011/141‑1 (MQ=40)
                                            aTGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTTTGttt                                                                                                 >  2:411667/1‑141 (MQ=255)
                                            aTGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCtt                                                                                                 >  2:205339/1‑141 (MQ=255)
                                               aTTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCttttt                                                                                              >  1:320867/1‑141 (MQ=255)
                                                 tATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTttct                                                                                            <  1:268906/141‑1 (MQ=255)
                                                       gTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCaaa                                                                                      >  2:192509/1‑141 (MQ=255)
                                                       gTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCaaa                                                                                      >  2:273160/1‑141 (MQ=255)
                                                          gCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCTATATGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTTCAAAttt                                                                                   >  1:85034/1‑141 (MQ=14)
                                                          gCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAAttt                                                                                   <  1:410178/141‑1 (MQ=255)
                                                             tACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGAt                                                                                <  1:186516/141‑1 (MQ=255)
                                                             tACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGAt                                                                                <  2:324127/141‑1 (MQ=255)
                                                              aCGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATa                                                                               <  1:274063/141‑1 (MQ=255)
                                                              aCGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATGTACGGCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTGCCAAATTTGCTa                                                                               >  2:337833/1‑141 (MQ=255)
                                                               cGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATat                                                                              <  1:9212/141‑2 (MQ=255)
                                                               cGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATat                                                                              <  2:370988/141‑2 (MQ=255)
                                                               cGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATat                                                                              <  1:257600/141‑2 (MQ=255)
                                                               cGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATat                                                                              <  2:298789/141‑2 (MQ=40)
                                                                gCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATata                                                                             >  2:65166/1‑139 (MQ=38)
                                                                gCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATata                                                                             <  1:126719/141‑3 (MQ=39)
                                                                gCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATata                                                                             >  1:314442/1‑139 (MQ=39)
                                                                 cAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACaa                                                                            >  2:266647/1‑141 (MQ=255)
                                                                     cAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTTATATAAAAtt                                                                        >  2:309427/1‑141 (MQ=11)
                                                                       aaTATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTgg                                                                      >  2:163098/1‑141 (MQ=255)
                                                                       aaTATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTgg                                                                      <  2:42995/141‑1 (MQ=255)
                                                                         tatCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTgggg                                                                    <  1:146231/141‑1 (MQ=38)
                                                                            cTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCat                                                                 <  2:217436/141‑1 (MQ=255)
                                                                            cTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCat                                                                 <  2:407295/141‑1 (MQ=255)
                                                                            cTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCat                                                                 <  2:383752/141‑1 (MQ=255)
                                                                             tAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCata                                                                >  2:360381/1‑141 (MQ=255)
                                                                              aaTGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCatat                                                               >  1:363408/1‑141 (MQ=255)
                                                                                  tatgtCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCtt                                                           <  1:64185/141‑1 (MQ=255)
                                                                                   atgtCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACACAATTGGGGCATATTCTTg                                                          >  2:76905/1‑141 (MQ=255)
                                                                                    tgtCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGa                                                         >  1:377574/1‑141 (MQ=25)
                                                                                      tCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAAc                                                       <  1:26296/141‑1 (MQ=255)
                                                                                        ccTCTGTATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAAccc                                                     >  2:375479/1‑141 (MQ=255)
                                                                                          tctGTATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCaa                                                   <  1:80426/141‑1 (MQ=255)
                                                                                           ctGCATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAAc                                                  >  1:104583/1‑141 (MQ=21)
                                                                                            tGCATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACg                                                 <  1:5359/141‑1 (MQ=21)
                                                                                            tGCATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACg                                                 <  1:111262/141‑1 (MQ=21)
                                                                                             gCATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACgg                                                >  1:288513/1‑141 (MQ=40)
                                                                                               aTCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTATTAAGCGGTTTTGTGCTTTTTCTTCCAAATTTTATATAAAATGGGGGCATATTCTTGAACCCAACGGTa                                              >  1:351100/1‑141 (MQ=11)
                                                                                               aTCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTa                                              <  1:339004/141‑1 (MQ=19)
                                                                                               aTCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTa                                              >  2:178259/1‑141 (MQ=19)
                                                                                                tCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGCTATAAAATTGGGGCATATTCTTGAACCCAACGGTAg                                             <  2:103806/141‑1 (MQ=21)
                                                                                                tCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAg                                             <  1:34706/141‑1 (MQ=19)
                                                                                                  aaTGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGAc                                           >  1:239304/1‑141 (MQ=21)
                                                                                                  aaTGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGAc                                           >  1:133328/1‑141 (MQ=21)
                                                                                                  aaTGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGAc                                           >  1:195919/1‑141 (MQ=40)
                                                                                                  aaTGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGAc                                           >  2:237501/1‑141 (MQ=40)
                                                                                                    tGGCACGATATAAATAGCTCCATTTT‑TCTTTTATTTTGATATACGTCTCATCAATACGCTATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCg                                         <  1:370306/141‑1 (MQ=11)
                                                                                                    tGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCg                                         <  2:122796/141‑1 (MQ=21)
                                                                                                    tGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCg                                         <  2:282053/141‑1 (MQ=40)
                                                                                                    tGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGatcg                                         >  1:413164/1‑138 (MQ=255)
                                                                                                       cACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTg                                      >  1:250459/1‑141 (MQ=21)
                                                                                                        aCGATATAAATAGCTCCATTTTACTTTTTATTTTGATATACGTCTAATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCACCGGTAGatagatg                                      >  2:5153/1‑135 (MQ=11)
                                                                                                        aCGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGa                                     >  1:136844/1‑141 (MQ=255)
                                                                                                         cGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGaa                                    >  1:400536/1‑141 (MQ=255)
                                                                                                          gATATAAATAGCTCCATTTT‑CCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGATTTTTCTTTCAAATTTTATACAAAATTGGGTCATATTCTTTAACCCAACGGTAGACAGTTGAat                                   >  2:152196/1‑141 (MQ=14)
                                                                                                             ataAATAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAatgat                                >  2:257962/1‑141 (MQ=255)
                                                                                                                aaTAGCTCCATTTT‑CCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGaa                             >  1:4955/1‑141 (MQ=40)
                                                                                                                aaTAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGaa                             >  1:100765/1‑141 (MQ=255)
                                                                                                                aaTAGCTCCATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGaa                             <  1:305228/141‑1 (MQ=255)
                                                                                                                 aTAGCTCCATTTT‑CCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAAc                            <  2:58700/141‑1 (MQ=21)
                                                                                                                      tCCATTTT‑CCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTa                       >  2:398398/1‑141 (MQ=21)
                                                                                                                        cATTTT‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTaca                     >  1:335435/1‑141 (MQ=255)
                                                                                                                         aTTTT‑CCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTacac                    >  1:388405/1‑141 (MQ=21)
                                                                                                                          tttt‑CCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTAcacc                   >  2:278454/1‑141 (MQ=21)
                                                                                                                          tttt‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTAcacc                   <  2:111243/141‑1 (MQ=255)
                                                                                                                           ttt‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTAcacca                  <  2:183536/141‑1 (MQ=255)
                                                                                                                            tt‑CCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTAcaccac                 <  2:135424/141‑1 (MQ=21)
                                                                                                                             t‑CCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACg                >  2:355549/1‑141 (MQ=255)
                                                                                                                               ccTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGt               <  1:222731/141‑1 (MQ=255)
                                                                                                                                       tttGATGGACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTaa       <  2:260847/141‑1 (MQ=21)
                                                                                                                                         tGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAata     >  1:178622/1‑141 (MQ=11)
                                                                                                                                          gATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGTTCTCTTAatat    <  2:29172/141‑1 (MQ=11)
                                                                                                                                             |                                                                                                                                           
TTACCAAATTGTTTAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTT‑CCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAATATTT  >  CP000730/36175‑36454

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑